Wall clock time and date at job start Tue Mar 31 2020 06:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31469 * 1 3 3 Si 1.86804 * 119.99784 * 2 1 4 4 H 1.48500 * 109.47271 * 270.00238 * 3 2 1 5 5 H 1.48502 * 109.47226 * 30.00280 * 3 2 1 6 6 H 1.48503 * 109.47286 * 150.00249 * 3 2 1 7 7 C 1.38776 * 120.00513 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00427 * 182.25057 * 7 2 1 9 9 N 1.37089 * 119.99726 * 2.24610 * 7 2 1 10 10 C 1.36274 * 124.87749 * 334.32178 * 9 7 2 11 11 C 1.36261 * 109.70149 * 179.97438 * 10 9 7 12 12 C 1.46965 * 126.70030 * 180.02562 * 11 10 9 13 13 N 1.30049 * 120.00026 * 23.56478 * 12 11 10 14 14 N 1.40097 * 120.00129 * 10.59183 * 13 12 11 15 15 C 1.34775 * 120.00333 * 184.22029 * 14 13 12 16 16 S 1.71195 * 120.00291 * 180.02562 * 15 14 13 17 17 N 1.34784 * 119.99668 * 359.97438 * 15 14 13 18 18 C 1.39856 * 119.99795 * 185.52209 * 17 15 14 19 19 C 1.38885 * 120.07429 * 220.63254 * 18 17 15 20 20 C 1.38114 * 119.93120 * 179.74488 * 19 18 17 21 21 C 1.38288 * 120.06563 * 0.51287 * 20 19 18 22 22 C 1.38284 * 120.14832 * 359.76600 * 21 20 19 23 23 C 1.38114 * 120.07006 * 359.97438 * 22 21 20 24 24 C 1.47567 * 106.59861 * 0.25847 * 11 10 9 25 25 C 1.39199 * 133.90588 * 179.71894 * 24 11 10 26 26 C 1.37902 * 119.67769 * 180.02562 * 25 24 11 27 27 C 1.38671 * 120.29938 * 359.97438 * 26 25 24 28 28 C 1.37936 * 120.60010 * 359.58434 * 27 26 25 29 29 C 1.38325 * 124.87786 * 154.31533 * 9 7 2 30 30 H 0.97002 * 120.00685 * 0.02562 * 1 2 3 31 31 H 1.07999 * 125.15123 * 0.02562 * 10 9 7 32 32 H 1.07995 * 119.99971 * 203.57209 * 12 11 10 33 33 H 0.96998 * 120.00085 * 4.21821 * 14 13 12 34 34 H 0.96999 * 119.99808 * 5.25721 * 17 15 14 35 35 H 1.08004 * 120.03373 * 0.02562 * 19 18 17 36 36 H 1.07992 * 119.96446 * 180.25447 * 20 19 18 37 37 H 1.08001 * 119.92382 * 179.73940 * 21 20 19 38 38 H 1.07996 * 119.96609 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.03089 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.15799 * 0.02562 * 25 24 11 41 41 H 1.08006 * 119.84969 * 180.02562 * 26 25 24 42 42 H 1.07991 * 119.70152 * 180.02562 * 27 26 25 43 43 H 1.08005 * 120.02597 * 179.88053 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 2.4961 2.0466 -1.4001 5 1 1.4461 2.6527 0.7001 6 1 3.5463 1.4403 0.7000 7 6 2.0087 -1.2018 -0.0005 8 1 3.0880 -1.2021 0.0362 9 7 1.3241 -2.3886 -0.0476 10 6 0.0462 -2.5689 0.3902 11 6 -0.3271 -3.8649 0.1963 12 6 -1.6260 -4.4645 0.5330 13 7 -2.6829 -3.7132 0.6321 14 7 -2.6368 -2.3795 0.2057 15 6 -3.7044 -1.5770 0.3862 16 16 -3.6483 0.0526 -0.1354 17 7 -4.8166 -2.0577 0.9766 18 6 -5.9635 -1.2618 1.0603 19 6 -6.7270 -1.2611 2.2205 20 6 -7.8562 -0.4699 2.3019 21 6 -8.2327 0.3129 1.2259 22 6 -7.4780 0.3101 0.0672 23 6 -6.3447 -0.4748 -0.0187 24 6 0.8293 -4.5502 -0.4125 25 6 1.0664 -5.8562 -0.8318 26 6 2.2897 -6.1872 -1.3757 27 6 3.2806 -5.2259 -1.5060 28 6 3.0553 -3.9262 -1.1028 29 6 1.8311 -3.5749 -0.5464 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5766 -1.8008 0.8243 32 1 -1.7028 -5.5290 0.6981 33 1 -1.8365 -2.0337 -0.2194 34 1 -4.8228 -2.9571 1.3399 35 1 -6.4355 -1.8751 3.0598 36 1 -8.4479 -0.4658 3.2053 37 1 -9.1184 0.9275 1.2905 38 1 -7.7749 0.9222 -0.7715 39 1 -5.7560 -0.4768 -0.9241 40 1 0.2961 -6.6065 -0.7317 41 1 2.4765 -7.1996 -1.7024 42 1 4.2348 -5.4957 -1.9336 43 1 3.8343 -3.1854 -1.2068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409379768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:43 Heat of formation + Delta-G solvation = 156.583283 kcal Electronic energy + Delta-G solvation = -28709.892794 eV Core-core repulsion = 24847.956567 eV Total energy + Delta-G solvation = -3861.936226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.105 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63119 -39.81982 -38.07736 -36.53739 -35.81036 -33.54231 -32.46027 -30.97036 -30.81649 -29.09905 -28.94841 -28.07598 -25.61572 -24.31963 -22.66281 -22.48401 -22.00543 -21.24830 -20.91827 -19.44209 -18.81437 -17.95937 -17.04538 -16.81059 -15.91125 -15.74938 -15.46102 -15.05182 -14.97290 -14.62806 -14.38288 -14.02318 -13.89891 -13.74621 -13.33742 -13.30005 -13.27257 -13.10090 -12.70344 -12.05150 -11.79597 -11.71792 -11.57349 -11.50470 -11.35221 -11.06609 -11.00160 -10.83499 -10.78230 -10.60731 -10.41831 -9.96055 -9.64298 -9.29257 -8.87189 -8.82756 -8.11021 -7.52792 -7.38681 -7.07286 -6.83267 -6.68996 -4.66367 1.04893 1.54087 1.60425 1.84626 2.22287 2.28099 2.60308 2.93896 2.96988 3.03884 3.13880 3.29876 3.64026 3.81976 3.95746 4.37643 4.46164 4.72027 4.98074 5.05607 5.23945 5.25782 5.40888 5.48874 5.54451 5.55554 5.61247 5.75874 5.84371 5.91858 6.06539 6.11996 6.31670 6.38544 6.44560 6.49640 6.57516 6.63610 6.65433 6.71634 6.78714 6.90643 6.97547 7.08753 7.14485 7.19458 7.24655 7.53593 7.56035 7.68079 8.16162 8.38048 8.55446 8.94874 10.05853 Molecular weight = 364.11amu Principal moments of inertia in cm(-1) A = 0.010640 B = 0.003078 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.067131 B = 9094.282394 C =11300.025105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.044 3.956 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.348 4.348 8 H 0.113 0.887 9 N -0.256 5.256 10 C 0.094 3.906 11 C -0.318 4.318 12 C 0.231 3.769 13 N -0.365 5.365 14 N -0.516 5.516 15 C 0.583 3.417 16 S -0.621 6.621 17 N -0.629 5.629 18 C 0.140 3.860 19 C -0.131 4.131 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.075 4.075 24 C -0.068 4.068 25 C -0.096 4.096 26 C -0.148 4.148 27 C -0.140 4.140 28 C -0.094 4.094 29 C 0.044 3.956 30 H 0.303 0.697 31 H 0.189 0.811 32 H 0.174 0.826 33 H 0.436 0.564 34 H 0.415 0.585 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.145 0.855 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.591 -6.129 2.159 9.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.169 4.169 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.476 4.476 8 H 0.130 0.870 9 N 0.085 4.915 10 C -0.052 4.052 11 C -0.330 4.330 12 C 0.027 3.973 13 N -0.175 5.175 14 N -0.242 5.242 15 C 0.224 3.776 16 S -0.490 6.490 17 N -0.255 5.255 18 C 0.046 3.954 19 C -0.152 4.152 20 C -0.137 4.137 21 C -0.144 4.144 22 C -0.134 4.134 23 C -0.097 4.097 24 C -0.074 4.074 25 C -0.115 4.115 26 C -0.167 4.167 27 C -0.160 4.160 28 C -0.113 4.113 29 C -0.063 4.063 30 H 0.115 0.885 31 H 0.206 0.794 32 H 0.191 0.809 33 H 0.291 0.709 34 H 0.255 0.745 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.162 0.838 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.474 -4.632 2.105 9.884 hybrid contribution 1.692 -0.240 0.102 1.712 sum -6.782 -4.872 2.207 8.637 Atomic orbital electron populations 1.69536 1.05850 1.31753 1.38137 1.25631 0.96119 1.00837 0.94352 0.85583 0.78982 0.79050 0.79299 1.19321 1.19655 1.18928 1.20000 0.93216 0.81071 1.53282 0.86976 1.40190 1.09814 1.06248 1.35226 1.22800 0.88370 0.95070 0.99006 1.19234 0.95285 0.94596 1.23879 1.24310 0.86859 0.98155 0.87941 1.74885 1.27025 0.91719 1.23831 1.47060 1.16110 1.07545 1.53484 1.22181 0.80740 0.92545 0.82110 1.93359 1.90590 0.96239 1.68801 1.42132 1.08828 1.17720 1.56869 1.17485 0.86671 0.96568 0.94689 1.20857 0.97113 1.01650 0.95587 1.20794 0.96875 0.97274 0.98802 1.21114 0.99959 0.99520 0.93811 1.20950 0.94621 0.99592 0.98256 1.21469 0.94425 0.94875 0.98932 1.18781 0.92914 0.93001 1.02688 1.20230 0.96842 0.94109 1.00328 1.20672 0.94016 0.98633 1.03374 1.20546 0.99041 0.92536 1.03895 1.20033 0.94636 0.96271 1.00403 1.18501 0.96120 0.87281 1.04393 0.88468 0.79421 0.80886 0.70934 0.74508 0.86111 0.86046 0.86343 0.85880 0.83782 0.87130 0.87160 0.86948 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.11 10.60 55.49 0.59 -19.52 16 2 C 0.04 1.03 5.45 -17.51 -0.10 0.93 16 3 Si 0.95 18.47 29.55 -169.99 -5.02 13.45 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.35 -8.25 9.88 -15.00 -0.15 -8.40 16 8 H 0.11 2.51 7.83 -52.49 -0.41 2.10 16 9 N -0.26 -6.04 2.90 -59.48 -0.17 -6.21 16 10 C 0.09 2.16 7.83 -16.29 -0.13 2.03 16 11 C -0.32 -6.40 5.93 -103.27 -0.61 -7.01 16 12 C 0.23 3.78 11.57 -14.77 -0.17 3.61 16 13 N -0.37 -6.24 10.46 32.08 0.34 -5.90 16 14 N -0.52 -10.14 5.34 29.96 0.16 -9.98 16 15 C 0.58 11.27 7.74 -86.91 -0.67 10.59 16 16 S -0.62 -13.64 26.53 -107.50 -2.85 -16.49 16 17 N -0.63 -9.98 5.28 -11.41 -0.06 -10.04 16 18 C 0.14 2.11 5.94 -83.72 -0.50 1.61 16 19 C -0.13 -1.66 9.97 -39.39 -0.39 -2.05 16 20 C -0.12 -1.32 10.04 -39.61 -0.40 -1.72 16 21 C -0.13 -1.41 10.04 -39.55 -0.40 -1.81 16 22 C -0.11 -1.47 10.04 -39.61 -0.40 -1.87 16 23 C -0.07 -1.15 7.85 -39.39 -0.31 -1.46 16 24 C -0.07 -1.36 6.36 -104.90 -0.67 -2.03 16 25 C -0.10 -1.61 10.09 -39.35 -0.40 -2.01 16 26 C -0.15 -2.30 10.03 -39.54 -0.40 -2.69 16 27 C -0.14 -2.28 10.02 -39.53 -0.40 -2.67 16 28 C -0.09 -1.78 9.93 -39.41 -0.39 -2.17 16 29 C 0.04 0.96 6.73 -83.82 -0.56 0.39 16 30 H 0.30 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.19 4.54 4.42 -52.49 -0.23 4.30 16 32 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 33 H 0.44 9.62 4.97 -182.60 -0.91 8.71 16 34 H 0.42 5.83 7.88 -40.82 -0.32 5.50 16 35 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 39 H 0.14 2.48 6.16 -47.29 -0.29 2.19 16 40 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.11 2.01 8.06 -52.48 -0.42 1.58 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -27.41 379.52 -13.44 -40.85 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: -5.10 Total: 24.84 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -7.03 Total: -16.71 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.85 Total: -51.66 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Atomic # 16 Polarization: -13.64 SS G_CDS: -2.85 Total: -16.49 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.41 -13.44 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409379768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.436 kcal (2) G-P(sol) polarization free energy of solvation -27.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds