Wall clock time and date at job start Tue Mar 31 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35948 * 117.00286 * 2 1 4 4 C 1.38087 * 119.99918 * 0.26745 * 3 2 1 5 5 C 1.39975 * 119.83572 * 180.26531 * 4 3 2 6 6 C 1.46964 * 120.07720 * 179.74204 * 5 4 3 7 7 C 1.35030 * 120.00215 * 316.14592 * 6 5 4 8 8 C 1.46254 * 119.99596 * 349.10188 * 7 6 5 9 9 O 1.21723 * 120.00262 * 352.83737 * 8 7 6 10 10 N 1.34779 * 119.99911 * 172.84576 * 8 7 6 11 11 C 1.46499 * 120.00090 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47152 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47317 * 304.99704 * 12 11 10 14 14 C 1.53002 * 109.47472 * 64.99412 * 12 11 10 15 15 O 1.42904 * 109.47395 * 183.83274 * 14 12 11 16 16 C 1.52999 * 109.47372 * 184.99808 * 12 11 10 17 17 C 1.53010 * 109.47043 * 303.23625 * 16 12 11 18 18 C 1.52997 * 109.47233 * 63.22989 * 16 12 11 19 19 C 1.40027 * 119.84423 * 359.47596 * 5 4 3 20 20 C 1.37642 * 119.99861 * 0.26677 * 19 5 4 21 21 C 1.39054 * 120.16499 * 359.97438 * 20 19 5 22 22 O 1.35612 * 119.92066 * 180.02562 * 21 20 19 23 23 C 1.34760 * 117.00301 * 6.37927 * 22 21 20 24 24 H 1.07998 * 119.99885 * 5.09611 * 23 22 21 25 25 C 1.38708 * 120.00008 * 185.10348 * 23 22 21 26 26 N 1.31524 * 120.00153 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00077 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47357 * 59.99178 * 27 25 23 29 29 H 1.48498 * 109.47623 * 179.97438 * 27 25 23 30 30 H 1.48509 * 109.46683 * 299.99365 * 27 25 23 31 31 H 1.08993 * 109.47316 * 59.99260 * 1 2 3 32 32 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46849 * 299.99209 * 1 2 3 34 34 H 1.08003 * 120.07814 * 0.02562 * 4 3 2 35 35 H 1.08001 * 120.00242 * 136.14210 * 6 5 4 36 36 H 1.07994 * 120.00251 * 169.09832 * 7 6 5 37 37 H 0.96996 * 120.00051 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47450 * 59.99344 * 11 10 8 39 39 H 1.09008 * 109.46571 * 299.99452 * 11 10 8 40 40 H 1.08998 * 109.47023 * 303.83370 * 14 12 11 41 41 H 1.09000 * 109.46807 * 63.83774 * 14 12 11 42 42 H 0.96698 * 114.00230 * 179.97438 * 15 14 12 43 43 H 1.08996 * 109.47415 * 183.23549 * 16 12 11 44 44 H 1.09000 * 109.46975 * 59.99208 * 17 16 12 45 45 H 1.08994 * 109.47206 * 180.02562 * 17 16 12 46 46 H 1.09001 * 109.46309 * 299.99954 * 17 16 12 47 47 H 1.09008 * 109.46645 * 63.93047 * 18 16 12 48 48 H 1.09001 * 109.47252 * 183.92311 * 18 16 12 49 49 H 1.08992 * 109.47427 * 303.93207 * 18 16 12 50 50 H 1.07999 * 120.00026 * 180.25013 * 19 5 4 51 51 H 1.08007 * 119.91654 * 180.02562 * 20 19 5 52 52 H 0.96994 * 119.99816 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3694 0.0056 5 6 1.9333 3.6147 -0.0001 6 6 1.1381 4.8507 0.0001 7 6 0.0604 4.9602 -0.8060 8 6 -0.1804 3.9593 -1.8448 9 8 0.6545 3.1027 -2.0700 10 7 -1.3269 3.9855 -2.5530 11 6 -1.5684 2.9826 -3.5932 12 6 -2.9323 3.2356 -4.2387 13 1 -3.7016 3.2551 -3.4668 14 6 -2.9092 4.5796 -4.9696 15 8 -4.2081 4.8576 -5.4967 16 6 -3.2395 2.1175 -5.2368 17 6 -2.1177 2.0376 -6.2744 18 6 -3.3422 0.7842 -4.4934 19 6 3.3321 3.6802 -0.0002 20 6 4.0752 2.5216 -0.0004 21 6 3.4405 1.2844 0.0001 22 8 4.1776 0.1461 0.0005 23 6 5.5118 0.2811 0.1337 24 1 5.9404 1.2554 0.3163 25 6 6.3346 -0.8314 0.0361 26 7 5.8126 -2.0180 -0.1859 27 14 8.1840 -0.6442 0.2201 28 1 8.4941 -0.0849 1.5603 29 1 8.8328 -1.9721 0.0761 30 1 8.6954 0.2735 -0.8296 31 1 -0.3633 0.5139 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 0.2157 2.3144 0.0104 35 1 1.4157 5.6713 0.6450 36 1 -0.6237 5.7868 -0.6836 37 1 -1.9924 4.6679 -2.3734 38 1 -1.5563 1.9876 -3.1485 39 1 -0.7886 3.0511 -4.3519 40 1 -2.6237 5.3674 -4.2726 41 1 -2.1876 4.5371 -5.7855 42 1 -4.2677 5.6965 -5.9738 43 1 -4.1841 2.3276 -5.7385 44 1 -1.1731 1.8276 -5.7727 45 1 -2.3368 1.2413 -6.9857 46 1 -2.0445 2.9875 -6.8040 47 1 -4.1856 0.8171 -3.8035 48 1 -3.4918 -0.0218 -5.2118 49 1 -2.4229 0.6076 -3.9352 50 1 3.8278 4.6397 -0.0005 51 1 5.1540 2.5737 -0.0001 52 1 6.3880 -2.7959 -0.2537 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493660659.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:13 Heat of formation + Delta-G solvation = -102.912804 kcal Electronic energy + Delta-G solvation = -33424.570115 eV Core-core repulsion = 28970.285757 eV Total energy + Delta-G solvation = -4454.284357 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.192 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.06166 -39.34638 -38.47230 -37.40390 -36.30346 -35.90825 -34.10654 -32.93301 -32.10083 -30.11906 -29.34609 -28.39331 -27.52296 -26.65914 -25.95007 -25.29706 -23.44017 -22.56279 -21.42505 -21.01592 -19.86043 -18.83563 -17.98841 -17.86126 -17.44393 -16.76395 -16.28288 -15.86007 -15.74664 -15.32219 -15.08857 -14.96025 -14.63340 -14.37964 -14.33685 -13.97801 -13.77702 -13.61177 -13.33872 -13.31894 -13.09018 -13.03829 -12.82015 -12.68115 -12.36788 -12.11186 -12.06225 -11.65826 -11.61659 -11.53632 -11.24430 -11.17000 -11.00263 -10.89270 -10.75528 -10.65910 -10.57979 -10.45692 -10.27756 -10.23724 -9.50173 -9.42544 -9.19604 -8.93849 -8.67043 -7.45960 -6.71373 -6.41186 -3.93948 1.20054 2.41882 2.64714 3.15803 3.18155 3.19870 3.30638 3.61714 3.78971 3.99323 4.17435 4.37819 4.49995 4.64441 4.65522 4.94121 5.02669 5.06849 5.10819 5.12522 5.16633 5.19414 5.25504 5.30803 5.46192 5.49428 5.53587 5.62837 5.65593 5.70072 5.70796 5.72186 5.79323 5.82562 5.86161 5.93433 5.95120 6.11771 6.19204 6.27010 6.33546 6.47956 6.52052 6.58604 6.74546 7.06324 7.21835 7.22357 7.29901 7.43203 7.63740 7.73938 8.00485 8.32858 8.52814 9.02835 9.76406 10.75956 Molecular weight = 363.19amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.002361 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.111550 B =11855.572841 C =12804.245121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.304 6.304 3 C 0.044 3.956 4 C -0.078 4.078 5 C -0.158 4.158 6 C 0.026 3.974 7 C -0.266 4.266 8 C 0.535 3.465 9 O -0.508 6.508 10 N -0.739 5.739 11 C 0.123 3.877 12 C -0.093 4.093 13 H 0.083 0.917 14 C 0.077 3.923 15 O -0.572 6.572 16 C -0.083 4.083 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.065 4.065 20 C -0.230 4.230 21 C 0.152 3.848 22 O -0.157 6.157 23 C -0.389 4.389 24 H 0.093 0.907 25 C 0.039 3.961 26 N -0.854 5.854 27 Si 0.942 3.058 28 H -0.269 1.269 29 H -0.278 1.278 30 H -0.269 1.269 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.394 0.606 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.378 0.622 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.061 0.939 50 H 0.108 0.892 51 H 0.133 0.867 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.578 14.622 -6.852 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.219 6.219 3 C 0.000 4.000 4 C -0.098 4.098 5 C -0.159 4.159 6 C 0.007 3.993 7 C -0.287 4.287 8 C 0.325 3.675 9 O -0.384 6.384 10 N -0.393 5.393 11 C -0.001 4.001 12 C -0.112 4.112 13 H 0.101 0.899 14 C -0.001 4.001 15 O -0.377 6.377 16 C -0.102 4.102 17 C -0.213 4.213 18 C -0.212 4.212 19 C -0.084 4.084 20 C -0.250 4.250 21 C 0.097 3.903 22 O -0.059 6.059 23 C -0.465 4.465 24 H 0.110 0.890 25 C -0.166 4.166 26 N -0.487 5.487 27 Si 0.766 3.234 28 H -0.194 1.194 29 H -0.203 1.203 30 H -0.194 1.194 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.127 0.873 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.227 0.773 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.225 0.775 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.126 0.874 51 H 0.150 0.850 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.958 12.680 -6.798 23.010 hybrid contribution 0.387 1.349 -0.236 1.424 sum -17.571 14.029 -7.034 23.559 Atomic orbital electron populations 1.22811 0.80774 1.02468 1.00004 1.86202 1.19081 1.26540 1.90036 1.17948 0.89284 0.84429 1.08378 1.20491 0.97478 0.90650 1.01163 1.18034 0.92725 0.91434 1.13696 1.22323 0.90617 0.94674 0.91734 1.22609 1.02745 1.02434 1.00909 1.18510 0.81317 0.85202 0.82502 1.91024 1.43570 1.36720 1.67051 1.46068 1.20784 1.33558 1.38931 1.21421 0.95527 0.92813 0.90295 1.21401 0.97415 0.94289 0.98076 0.89909 1.22301 0.84544 0.96314 0.96942 1.86464 1.31477 1.44123 1.75671 1.20994 0.99745 0.93957 0.95489 1.22001 0.98856 1.01660 0.98791 1.21962 1.02186 0.96605 1.00446 1.20677 0.92192 0.97057 0.98458 1.20712 1.00322 0.90870 1.13050 1.18833 0.88272 0.87589 0.95621 1.84009 1.19496 1.25624 1.76818 1.21372 0.78892 0.96101 1.50139 0.88976 1.25334 1.00413 0.94321 0.96534 1.70046 1.36203 0.98602 1.43873 0.85776 0.80442 0.77981 0.79200 1.19431 1.20271 1.19447 0.93709 0.89362 0.94076 0.87270 0.85912 0.86193 0.77264 0.90631 0.91134 0.93666 0.93001 0.77502 0.90138 0.91990 0.92522 0.92675 0.92690 0.92441 0.92010 0.87385 0.84988 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.81 101.05 0.99 1.60 16 2 O -0.30 -7.24 10.28 -34.19 -0.35 -7.59 16 3 C 0.04 1.06 6.70 -39.12 -0.26 0.80 16 4 C -0.08 -1.59 5.58 -38.99 -0.22 -1.80 16 5 C -0.16 -2.92 4.53 -105.04 -0.48 -3.40 16 6 C 0.03 0.36 9.80 -37.19 -0.36 0.00 16 7 C -0.27 -3.26 9.91 -37.50 -0.37 -3.63 16 8 C 0.53 7.66 6.77 -13.04 -0.09 7.57 16 9 O -0.51 -9.74 12.18 5.17 0.06 -9.67 16 10 N -0.74 -7.74 5.24 -61.75 -0.32 -8.07 16 11 C 0.12 1.28 4.30 -4.05 -0.02 1.27 16 12 C -0.09 -0.76 1.93 -90.62 -0.18 -0.94 16 13 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 14 C 0.08 0.55 6.17 37.16 0.23 0.78 16 15 O -0.57 -4.12 13.09 -35.23 -0.46 -4.58 16 16 C -0.08 -0.69 2.64 -90.62 -0.24 -0.93 16 17 C -0.16 -1.32 8.48 37.16 0.32 -1.01 16 18 C -0.15 -1.32 9.01 37.16 0.33 -0.99 16 19 C -0.07 -1.27 9.78 -39.13 -0.38 -1.65 16 20 C -0.23 -5.28 9.10 -39.50 -0.36 -5.64 16 21 C 0.15 4.00 6.67 -38.76 -0.26 3.74 16 22 O -0.16 -4.77 9.52 -13.94 -0.13 -4.90 16 23 C -0.39 -11.22 9.43 30.91 0.29 -10.93 16 24 H 0.09 2.43 5.28 -52.49 -0.28 2.15 16 25 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 26 N -0.85 -25.76 13.67 55.48 0.76 -25.00 16 27 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 28 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 29 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 30 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 31 H 0.04 0.74 7.67 -51.93 -0.40 0.34 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 34 H 0.11 2.01 5.25 -52.48 -0.28 1.73 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.39 2.99 7.63 -40.82 -0.31 2.68 16 38 H 0.08 0.90 6.20 -51.93 -0.32 0.58 16 39 H 0.07 0.83 6.67 -51.92 -0.35 0.48 16 40 H 0.05 0.29 7.10 -51.93 -0.37 -0.08 16 41 H 0.05 0.37 6.33 -51.93 -0.33 0.04 16 42 H 0.38 1.16 9.12 45.56 0.42 1.57 16 43 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 44 H 0.06 0.59 6.48 -51.93 -0.34 0.26 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.05 0.44 6.43 -51.93 -0.33 0.10 16 47 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.59 6.23 -51.93 -0.32 0.27 16 50 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 51 H 0.13 2.96 5.70 -52.48 -0.30 2.66 16 52 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 415.61 15.07 6.26 6.26 Total: -1.00 -36.55 415.61 -7.17 -43.72 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.82 Total: 8.16 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -1.15 Total: -14.17 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.43 Total: -33.07 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.88 Total: -26.75 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.55 -7.17 -43.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493660659.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.188 kcal (2) G-P(sol) polarization free energy of solvation -36.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds