Wall clock time and date at job start Tue Mar 31 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35950 * 117.00281 * 2 1 4 4 C 1.38719 * 119.91976 * 0.02562 * 3 2 1 5 5 C 1.37928 * 120.14571 * 179.97438 * 4 3 2 6 6 C 1.39623 * 120.00037 * 0.02562 * 5 4 3 7 7 C 1.47722 * 120.07685 * 179.97438 * 6 5 4 8 8 N 1.31086 * 126.30730 * 180.02562 * 7 6 5 9 9 N 1.28654 * 109.41744 * 180.02562 * 8 7 6 10 10 C 1.31257 * 109.45304 * 0.02562 * 9 8 7 11 11 S 1.76196 * 126.28487 * 179.97438 * 10 9 8 12 12 C 1.80996 * 99.99955 * 0.02562 * 11 10 9 13 13 C 1.52999 * 109.47372 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.46931 * 300.00039 * 13 12 11 15 15 C 1.53000 * 109.47384 * 59.99479 * 13 12 11 16 16 C 1.50701 * 109.47349 * 180.02562 * 13 12 11 17 17 H 1.07992 * 120.00012 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99925 * 179.97438 * 16 13 12 19 19 N 1.31518 * 120.00222 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00068 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47226 * 59.99684 * 20 18 16 22 22 H 1.48503 * 109.47423 * 180.02562 * 20 18 16 23 23 H 1.48511 * 109.46886 * 299.99934 * 20 18 16 24 24 O 1.34699 * 107.42911 * 359.73740 * 10 9 8 25 25 C 1.39638 * 119.85338 * 0.02562 * 6 5 4 26 26 C 1.38260 * 119.84395 * 0.25424 * 25 6 5 27 27 O 1.35995 * 119.99571 * 179.72668 * 26 25 6 28 28 C 1.42900 * 117.00398 * 359.97438 * 27 26 25 29 29 H 1.09006 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47042 * 299.99039 * 1 2 3 31 31 H 1.08994 * 109.47295 * 59.99416 * 1 2 3 32 32 H 1.07996 * 119.92675 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.99524 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47295 * 299.99946 * 12 11 10 35 35 H 1.08999 * 109.47473 * 59.99741 * 12 11 10 36 36 H 1.08996 * 109.46996 * 59.99660 * 14 13 12 37 37 H 1.09001 * 109.47220 * 180.02562 * 14 13 12 38 38 H 1.09007 * 109.46998 * 299.99634 * 14 13 12 39 39 H 1.09000 * 109.46628 * 60.00583 * 15 13 12 40 40 H 1.09001 * 109.47039 * 180.02562 * 15 13 12 41 41 H 1.08996 * 109.47233 * 300.00763 * 15 13 12 42 42 H 0.96996 * 120.00089 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.07461 * 179.97438 * 25 6 5 44 44 H 1.09003 * 109.47302 * 300.00250 * 28 27 26 45 45 H 1.09004 * 109.46766 * 60.00452 * 28 27 26 46 46 H 1.08998 * 109.47734 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2892 2.3737 0.0005 5 6 1.9105 3.6050 0.0011 6 6 3.3046 3.6836 0.0005 7 6 3.9718 5.0015 0.0005 8 7 5.2649 5.2168 -0.0004 9 7 5.4875 6.4839 0.0005 10 6 4.3442 7.1286 0.0026 11 16 4.1334 8.8779 0.0051 12 6 5.8655 9.4031 0.0031 13 6 5.9351 10.9315 0.0056 14 6 5.2357 11.4759 -1.2417 15 6 5.2398 11.4717 1.2568 16 6 7.3773 11.3688 0.0033 17 1 8.1654 10.6305 0.0007 18 6 7.6905 12.7115 0.0044 19 7 6.7307 13.6107 0.0069 20 14 9.4781 13.2536 0.0022 21 1 10.1531 12.7287 -1.2119 22 1 9.5456 14.7371 0.0045 23 1 10.1568 12.7258 1.2132 24 8 3.3615 6.2073 -0.0029 25 6 4.0667 2.5135 -0.0011 26 6 3.4373 1.2824 -0.0075 27 8 4.1765 0.1410 -0.0147 28 6 5.5979 0.2884 -0.0158 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.2108 2.3143 0.0014 33 1 1.3187 4.5085 0.0019 34 1 6.3637 9.0157 0.8918 35 1 6.3610 9.0179 -0.8881 36 1 4.1926 11.1596 -1.2405 37 1 5.2856 12.5647 -1.2402 38 1 5.7310 11.0910 -2.1332 39 1 5.7381 11.0840 2.1453 40 1 5.2890 12.5607 1.2582 41 1 4.1967 11.1554 1.2580 42 1 6.9511 14.5553 0.0073 43 1 5.1452 2.5700 -0.0019 44 1 5.9051 0.8419 -0.9032 45 1 5.9074 0.8321 0.8768 46 1 6.0654 -0.6962 -0.0223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521394963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:19 Heat of formation + Delta-G solvation = -7.357213 kcal Electronic energy + Delta-G solvation = -29064.780357 eV Core-core repulsion = 24856.133466 eV Total energy + Delta-G solvation = -4208.646890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.86606 -40.95615 -38.87045 -37.43418 -36.22680 -35.96879 -32.45196 -31.64404 -30.85008 -29.79699 -27.78322 -27.60436 -26.43933 -25.81315 -25.22371 -24.39575 -23.80804 -22.30249 -21.83602 -19.35488 -19.11239 -18.20798 -17.64534 -17.28757 -17.06467 -16.47790 -16.11631 -16.09744 -15.62570 -15.52080 -15.15756 -14.89164 -14.80369 -14.13294 -13.57178 -13.51745 -13.19720 -13.10307 -12.89880 -12.61306 -12.39208 -12.35368 -11.85887 -11.84805 -11.78072 -11.62227 -11.57593 -11.52123 -11.39321 -11.20123 -10.92995 -10.80259 -10.45753 -10.36062 -10.28311 -10.10106 -9.68992 -9.60951 -9.17021 -8.81211 -8.46750 -8.28480 -7.38933 -6.08349 -4.19633 0.25954 0.87228 0.90148 1.49610 2.45158 2.48810 2.71003 2.81535 2.90051 3.27187 3.31758 3.31826 3.35593 4.04391 4.34265 4.35285 4.48863 4.59440 4.73517 4.74102 4.79529 4.90598 4.90801 5.06706 5.09128 5.13535 5.18285 5.23497 5.27018 5.34410 5.64573 5.75895 5.84212 5.93681 6.00066 6.07730 6.37985 6.58796 6.67591 6.77340 6.87713 6.91477 7.10012 7.23591 7.45988 7.63587 7.91421 8.03554 8.27523 8.27798 8.79322 9.46230 10.92955 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.022608 B = 0.001769 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.185336 B =15828.231329 C =16864.749772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.303 6.303 3 C 0.120 3.880 4 C -0.174 4.174 5 C -0.079 4.079 6 C -0.009 4.009 7 C 0.188 3.812 8 N -0.264 5.264 9 N -0.293 5.293 10 C 0.145 3.855 11 S 0.054 5.946 12 C -0.083 4.083 13 C 0.081 3.919 14 C -0.138 4.138 15 C -0.138 4.138 16 C -0.506 4.506 17 H 0.059 0.941 18 C 0.068 3.932 19 N -0.884 5.884 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 O -0.207 6.207 25 C -0.126 4.126 26 C 0.101 3.899 27 O -0.303 6.303 28 C 0.022 3.978 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.145 0.855 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.016 0.984 37 H 0.090 0.910 38 H 0.031 0.969 39 H 0.031 0.969 40 H 0.090 0.910 41 H 0.016 0.984 42 H 0.262 0.738 43 H 0.153 0.847 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.743 -23.828 -0.013 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.073 3.927 4 C -0.192 4.192 5 C -0.100 4.100 6 C -0.012 4.012 7 C -0.025 4.025 8 N -0.112 5.112 9 N -0.145 5.145 10 C -0.169 4.169 11 S 0.287 5.713 12 C -0.231 4.231 13 C 0.079 3.921 14 C -0.196 4.196 15 C -0.196 4.196 16 C -0.546 4.546 17 H 0.078 0.922 18 C -0.134 4.134 19 N -0.522 5.522 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 O -0.089 6.089 25 C -0.147 4.147 26 C 0.055 3.945 27 O -0.217 6.217 28 C -0.073 4.073 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.035 0.965 37 H 0.109 0.891 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.109 0.891 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.171 0.829 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.450 -23.541 -0.016 26.630 hybrid contribution 0.847 0.109 -0.004 0.854 sum -11.603 -23.431 -0.020 26.147 Atomic orbital electron populations 1.23145 0.78166 1.04314 1.01551 1.86186 1.21356 1.25645 1.88357 1.18437 0.89127 0.85394 0.99772 1.20962 1.00396 0.90690 1.07188 1.20981 0.92568 0.98208 0.98201 1.16767 0.92237 0.85273 1.06907 1.25169 0.88106 0.85855 1.03345 1.74388 1.12295 1.08850 1.15644 1.74981 1.21693 0.97472 1.20343 1.30897 0.83819 1.00939 1.01294 1.86299 1.17266 0.78914 1.88840 1.24434 0.88863 1.03740 1.06034 1.18114 0.96879 0.83500 0.93636 1.21959 0.95233 1.05055 0.97339 1.21954 0.95250 1.05036 0.97334 1.20913 0.90108 0.91881 1.51653 0.92245 1.24878 0.97418 0.96481 0.94617 1.69786 1.31328 1.01108 1.49979 0.86580 0.84856 0.77382 0.78745 1.20209 1.21235 1.20212 1.84998 1.37831 1.14814 1.71228 1.21027 1.01265 0.89179 1.03197 1.17934 0.88243 0.85857 1.02470 1.86181 1.19151 1.27388 1.88972 1.23168 0.78025 1.04206 1.01924 0.87960 0.92377 0.92384 0.83723 0.84338 0.89332 0.89333 0.96546 0.89121 0.94952 0.94944 0.89138 0.96542 0.92739 0.82948 0.92238 0.92234 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.83 10.27 -34.27 -0.35 -3.18 16 3 C 0.12 1.19 6.70 -39.01 -0.26 0.93 16 4 C -0.17 -1.46 9.02 -39.52 -0.36 -1.81 16 5 C -0.08 -0.79 9.72 -39.18 -0.38 -1.17 16 6 C -0.01 -0.12 5.87 -104.98 -0.62 -0.73 16 7 C 0.19 2.93 7.98 -14.00 -0.11 2.82 16 8 N -0.26 -4.68 11.89 32.08 0.38 -4.30 16 9 N -0.29 -5.65 11.62 30.32 0.35 -5.30 16 10 C 0.15 2.62 8.53 52.52 0.45 3.07 16 11 S 0.05 0.96 19.36 -107.50 -2.08 -1.12 16 12 C -0.08 -1.67 4.16 37.16 0.15 -1.51 16 13 C 0.08 1.85 0.52 -155.66 -0.08 1.77 16 14 C -0.14 -3.08 8.01 37.16 0.30 -2.78 16 15 C -0.14 -3.08 8.01 37.16 0.30 -2.78 16 16 C -0.51 -12.86 8.01 -34.44 -0.28 -13.13 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 19 N -0.88 -23.07 9.35 55.43 0.52 -22.55 16 20 Si 0.90 20.34 29.54 -169.99 -5.02 15.31 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 O -0.21 -3.41 10.69 2.22 0.02 -3.39 16 25 C -0.13 -1.42 8.68 -39.05 -0.34 -1.76 16 26 C 0.10 1.10 6.69 -39.18 -0.26 0.83 16 27 O -0.30 -3.20 10.27 -34.41 -0.35 -3.55 16 28 C 0.02 0.16 9.81 101.05 0.99 1.15 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 32 H 0.15 0.77 6.27 -52.49 -0.33 0.44 16 33 H 0.14 1.23 7.92 -52.48 -0.42 0.81 16 34 H 0.09 1.82 8.14 -51.92 -0.42 1.39 16 35 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 36 H 0.02 0.32 6.91 -51.93 -0.36 -0.04 16 37 H 0.09 2.23 6.07 -51.93 -0.31 1.92 16 38 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 41 H 0.02 0.32 6.91 -51.93 -0.36 -0.04 16 42 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 43 H 0.15 1.64 6.09 -52.49 -0.32 1.32 16 44 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 45 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -29.39 392.76 -6.29 -35.68 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.08 Total: -1.15 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 0.40 Total: -12.36 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 1.25 Total: -32.15 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.68 Total: -10.13 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.08 Total: -1.12 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.39 -6.29 -35.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521394963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.320 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds