Wall clock time and date at job start Tue Mar 31 2020 05:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46644 * 2 1 4 4 C 1.52995 * 109.47444 * 239.99823 * 2 1 3 5 5 O 1.45200 * 109.47151 * 119.99489 * 2 1 3 6 6 C 1.34241 * 116.99599 * 60.00477 * 5 2 1 7 7 O 1.20822 * 120.00117 * 359.97438 * 6 5 2 8 8 C 1.50699 * 119.99761 * 179.97438 * 6 5 2 9 9 H 1.09000 * 110.81970 * 61.88080 * 8 6 5 10 10 C 1.54897 * 110.75532 * 298.54394 * 8 6 5 11 11 C 1.54264 * 104.19493 * 203.74485 * 10 8 6 12 12 H 1.09001 * 110.03248 * 142.89814 * 11 10 8 13 13 O 1.42903 * 110.03084 * 264.32366 * 11 10 8 14 14 C 1.53873 * 106.60152 * 23.60884 * 11 10 8 15 15 H 1.09003 * 110.07636 * 240.69607 * 14 11 10 16 16 N 1.46497 * 110.03099 * 119.28325 * 14 11 10 17 17 S 1.65602 * 120.00084 * 97.83868 * 16 14 11 18 18 O 1.42094 * 104.27866 * 181.07314 * 17 16 14 19 19 O 1.42103 * 104.27506 * 308.92587 * 17 16 14 20 20 C 1.81398 * 104.45099 * 64.99698 * 17 16 14 21 21 C 1.52994 * 109.47285 * 180.02562 * 20 17 16 22 22 C 1.50699 * 109.47207 * 179.97438 * 21 20 17 23 23 H 1.07996 * 120.00076 * 0.02562 * 22 21 20 24 24 C 1.37884 * 119.99849 * 179.97438 * 22 21 20 25 25 N 1.31510 * 120.00084 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99587 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47485 * 90.00360 * 26 24 22 28 28 H 1.48507 * 109.46784 * 209.99926 * 26 24 22 29 29 H 1.48497 * 109.47232 * 329.99657 * 26 24 22 30 30 C 1.54268 * 106.59675 * 0.02562 * 14 11 10 31 31 H 1.08994 * 109.47567 * 299.99536 * 1 2 3 32 32 H 1.09002 * 109.47315 * 60.00276 * 1 2 3 33 33 H 1.09006 * 109.47107 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47061 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47258 * 299.99434 * 3 2 1 36 36 H 1.08999 * 109.47565 * 60.00332 * 3 2 1 37 37 H 1.09006 * 109.47314 * 300.00297 * 4 2 1 38 38 H 1.09002 * 109.46944 * 59.99675 * 4 2 1 39 39 H 1.08991 * 109.47420 * 179.97438 * 4 2 1 40 40 H 1.08998 * 110.48266 * 322.42555 * 10 8 6 41 41 H 1.09000 * 110.48216 * 85.06410 * 10 8 6 42 42 H 0.96692 * 114.00434 * 298.54836 * 13 11 10 43 43 H 0.97005 * 119.99898 * 277.83318 * 16 14 11 44 44 H 1.09000 * 109.47217 * 300.00385 * 20 17 16 45 45 H 1.08995 * 109.47036 * 59.99841 * 20 17 16 46 46 H 1.09000 * 109.47171 * 300.00246 * 21 20 17 47 47 H 1.09002 * 109.47252 * 60.00253 * 21 20 17 48 48 H 0.96995 * 120.00010 * 180.02562 * 25 24 22 49 49 H 1.08998 * 110.48695 * 217.70913 * 30 14 11 50 50 H 1.08999 * 110.48827 * 95.06472 * 30 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9560 -2.5025 0.5083 8 6 2.1183 -2.7437 2.5437 9 1 1.7388 -2.2959 3.4621 10 6 3.6643 -2.8344 2.5753 11 6 3.9522 -4.0895 3.4247 12 1 4.8143 -4.6223 3.0232 13 8 4.1957 -3.7163 4.7825 14 6 2.6975 -4.9761 3.3385 15 1 2.2739 -5.1224 4.3322 16 7 3.0377 -6.2704 2.7427 17 16 3.3232 -7.5802 3.7151 18 8 3.6407 -8.6272 2.8084 19 8 4.2775 -7.1142 4.6592 20 6 1.7310 -7.8992 4.5237 21 6 1.8666 -9.1013 5.4605 22 6 0.5441 -9.3659 6.1327 23 1 -0.3080 -8.7397 5.9135 24 6 0.4217 -10.4083 7.0270 25 7 1.4592 -11.1711 7.2937 26 14 -1.2178 -10.7367 7.8598 27 1 -2.0127 -11.6800 7.0332 28 1 -0.9819 -11.3309 9.2002 29 1 -1.9621 -9.4603 8.0082 30 6 1.6911 -4.2291 2.4392 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7490 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7209 -1.2494 40 1 4.0598 -2.9571 1.5670 41 1 4.0888 -1.9485 3.0475 42 1 4.9622 -3.1388 4.9003 43 1 3.0956 -6.3603 1.7786 44 1 1.4335 -7.0225 5.0990 45 1 0.9754 -8.1110 3.7674 46 1 2.1643 -9.9782 4.8856 47 1 2.6222 -8.8890 6.2169 48 1 1.3731 -11.9046 7.9225 49 1 0.6754 -4.3606 2.8122 50 1 1.7682 -4.5772 1.4092 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583651733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:31 Heat of formation + Delta-G solvation = -226.359908 kcal Electronic energy + Delta-G solvation = -31782.212530 eV Core-core repulsion = 27322.185961 eV Total energy + Delta-G solvation = -4460.026569 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.33819 -39.35332 -37.30889 -36.52055 -35.46070 -35.37346 -34.55107 -33.87096 -33.43995 -31.14364 -28.31035 -27.88358 -27.82281 -27.81273 -25.58491 -23.76932 -21.69714 -21.33670 -20.66892 -19.86388 -18.93933 -17.90709 -17.51318 -17.06132 -16.92850 -16.75197 -16.33229 -15.89628 -15.50972 -15.27869 -15.09678 -14.61301 -14.53911 -14.31947 -14.08097 -13.97136 -13.36578 -13.16990 -13.07337 -12.92624 -12.63578 -12.52234 -12.40257 -12.34333 -12.32625 -11.88626 -11.77671 -11.72549 -11.65904 -11.55449 -11.46505 -11.37011 -11.32583 -11.07626 -11.02047 -10.92967 -10.77376 -10.42802 -10.39221 -10.35391 -9.98029 -9.80876 -9.53044 -9.03944 -8.48160 -6.10294 -4.15594 0.79764 1.89296 2.27868 3.08247 3.27842 3.33983 3.36823 3.82459 4.03620 4.21669 4.25734 4.28917 4.32093 4.38463 4.40267 4.47741 4.73898 4.76530 4.91496 4.97150 5.01212 5.04593 5.08831 5.10481 5.24879 5.25933 5.27107 5.31571 5.40314 5.42023 5.43164 5.51908 5.56947 5.63848 5.69023 5.76496 5.82546 5.84708 5.85912 6.10197 6.19907 6.51383 7.03566 7.32648 7.38964 7.50270 7.57175 7.82784 8.19875 8.87704 9.48926 11.00747 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.002180 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.627344 B =12842.846266 C =13709.787089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.115 3.885 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.349 6.349 6 C 0.473 3.527 7 O -0.499 6.499 8 C -0.088 4.088 9 H 0.122 0.878 10 C -0.142 4.142 11 C 0.089 3.911 12 H 0.074 0.926 13 O -0.551 6.551 14 C 0.156 3.844 15 H 0.108 0.892 16 N -1.119 6.119 17 S 2.588 3.412 18 O -0.968 6.968 19 O -0.956 6.956 20 C -0.590 4.590 21 C 0.028 3.972 22 C -0.519 4.519 23 H 0.061 0.939 24 C 0.057 3.943 25 N -0.890 5.890 26 Si 0.900 3.100 27 H -0.279 1.279 28 H -0.285 1.285 29 H -0.273 1.273 30 C -0.111 4.111 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.378 0.622 43 H 0.413 0.587 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.033 0.967 47 H 0.034 0.966 48 H 0.265 0.735 49 H 0.090 0.910 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.532 26.426 -15.201 30.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.079 3.921 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.267 6.267 6 C 0.316 3.684 7 O -0.387 6.387 8 C -0.107 4.107 9 H 0.140 0.860 10 C -0.180 4.180 11 C 0.028 3.972 12 H 0.092 0.908 13 O -0.356 6.356 14 C 0.048 3.952 15 H 0.126 0.874 16 N -0.875 5.875 17 S 2.686 3.314 18 O -0.958 6.958 19 O -0.946 6.946 20 C -0.723 4.723 21 C -0.011 4.011 22 C -0.559 4.559 23 H 0.080 0.920 24 C -0.146 4.146 25 N -0.528 5.528 26 Si 0.727 3.273 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.198 1.198 30 C -0.150 4.150 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.226 0.774 43 H 0.247 0.753 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.074 0.926 49 H 0.109 0.891 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.715 25.349 -15.012 29.586 hybrid contribution -1.118 0.366 -0.143 1.185 sum 1.597 25.715 -15.156 29.892 Atomic orbital electron populations 1.22496 0.93955 1.04847 1.02784 1.22198 0.94463 0.92312 0.83084 1.21851 1.02237 0.92600 1.03094 1.22491 1.01677 1.03215 0.96650 1.86566 1.69715 1.25350 1.45024 1.23467 0.77134 0.80505 0.87251 1.90591 1.35028 1.69927 1.43147 1.22033 0.97968 0.95360 0.95373 0.86010 1.23106 0.93172 0.99880 1.01851 1.22908 0.98367 0.93354 0.82616 0.90798 1.86587 1.52663 1.71271 1.25109 1.21173 0.92960 0.83133 0.97966 0.87431 1.56014 1.88517 1.22812 1.20122 1.05758 0.78545 0.72611 0.74512 1.93556 1.83957 1.55106 1.63192 1.93582 1.57891 1.79647 1.63450 1.30446 1.19111 1.10557 1.12206 1.18957 0.99857 0.89112 0.93145 1.21001 0.95443 1.14544 1.24887 0.92043 1.25073 0.97009 0.95869 0.96599 1.69952 1.29661 1.18402 1.34814 0.86466 0.83444 0.78519 0.78827 1.20502 1.21026 1.19766 1.22647 0.99747 0.90887 1.01746 0.91944 0.91050 0.89716 0.91456 0.90364 0.91426 0.89735 0.91051 0.91997 0.90258 0.89401 0.77421 0.75324 0.86293 0.86068 0.94882 0.94751 0.92554 0.89126 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 8.37 37.16 0.31 -1.04 16 2 C 0.12 0.85 1.13 -90.62 -0.10 0.75 16 3 C -0.14 -0.73 8.85 37.16 0.33 -0.40 16 4 C -0.18 -1.33 8.37 37.16 0.31 -1.02 16 5 O -0.35 -3.07 9.87 -39.29 -0.39 -3.46 16 6 C 0.47 4.46 6.57 36.01 0.24 4.70 16 7 O -0.50 -5.64 11.29 -18.75 -0.21 -5.85 16 8 C -0.09 -0.72 3.40 -89.76 -0.31 -1.03 16 9 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 10 C -0.14 -1.06 5.98 -25.07 -0.15 -1.21 16 11 C 0.09 0.91 4.06 -25.62 -0.10 0.80 16 12 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 13 O -0.55 -6.13 13.22 -35.23 -0.47 -6.60 16 14 C 0.16 1.75 3.15 -66.81 -0.21 1.54 16 15 H 0.11 1.29 7.04 -51.93 -0.37 0.92 16 16 N -1.12 -13.91 5.28 -3.94 -0.02 -13.93 16 17 S 2.59 45.67 5.38 -107.50 -0.58 45.09 16 18 O -0.97 -19.92 18.08 -57.54 -1.04 -20.96 16 19 O -0.96 -19.65 17.82 -57.54 -1.03 -20.68 16 20 C -0.59 -11.25 5.91 37.15 0.22 -11.03 16 21 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 22 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 23 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 24 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 25 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 26 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 29 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 30 C -0.11 -1.02 5.56 -25.06 -0.14 -1.16 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.80 5.89 -51.93 -0.31 0.49 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.78 5.89 -51.93 -0.31 0.48 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 41 H 0.09 0.53 8.05 -51.93 -0.42 0.11 16 42 H 0.38 2.51 9.08 45.56 0.41 2.92 16 43 H 0.41 4.21 8.60 -34.47 -0.30 3.91 16 44 H 0.12 2.03 7.48 -51.92 -0.39 1.64 16 45 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 46 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.09 0.86 7.22 -51.93 -0.37 0.48 16 LS Contribution 414.92 15.07 6.25 6.25 Total: -1.00 -37.36 414.92 -9.40 -46.76 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.48 Total: 4.64 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -0.15 Total: -21.72 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.72 Total: -39.80 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -3.13 Total: -57.55 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 45.67 SS G_CDS: -0.58 Total: 45.09 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -37.36 -9.40 -46.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583651733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.602 kcal (2) G-P(sol) polarization free energy of solvation -37.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds