Wall clock time and date at job start Tue Mar 31 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47449 * 2 1 4 4 C 1.52992 * 109.47170 * 239.99450 * 2 1 3 5 5 O 1.45207 * 109.46724 * 119.99943 * 2 1 3 6 6 C 1.34223 * 117.00201 * 59.99693 * 5 2 1 7 7 O 1.20825 * 120.00163 * 0.02562 * 6 5 2 8 8 C 1.50698 * 120.00256 * 180.02562 * 6 5 2 9 9 H 1.08991 * 110.54193 * 57.38654 * 8 6 5 10 10 C 1.54899 * 110.48555 * 294.77383 * 8 6 5 11 11 C 1.54881 * 102.75000 * 203.37692 * 10 8 6 12 12 H 1.08994 * 110.48874 * 156.62117 * 11 10 8 13 13 O 1.42900 * 110.49087 * 279.26925 * 11 10 8 14 14 C 1.54269 * 104.19656 * 37.94420 * 11 10 8 15 15 H 1.09004 * 110.07263 * 95.69403 * 14 11 10 16 16 N 1.46497 * 110.03458 * 217.10380 * 14 11 10 17 17 S 1.65597 * 120.00079 * 262.16803 * 16 14 11 18 18 O 1.42104 * 104.27664 * 308.92486 * 17 16 14 19 19 O 1.42108 * 104.27669 * 181.07358 * 17 16 14 20 20 C 1.81391 * 104.45133 * 64.99941 * 17 16 14 21 21 C 1.53006 * 109.47235 * 180.02562 * 20 17 16 22 22 C 1.50698 * 109.47184 * 180.02562 * 21 20 17 23 23 H 1.08005 * 119.99819 * 359.97438 * 22 21 20 24 24 C 1.37875 * 120.00046 * 180.02562 * 22 21 20 25 25 N 1.31511 * 120.00192 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99979 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47454 * 59.99696 * 26 24 22 28 28 H 1.48506 * 109.47297 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47261 * 299.99689 * 26 24 22 30 30 C 1.53870 * 106.59763 * 336.38671 * 14 11 10 31 31 H 1.09001 * 109.46955 * 300.00573 * 1 2 3 32 32 H 1.08998 * 109.46898 * 59.99991 * 1 2 3 33 33 H 1.08993 * 109.47862 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47008 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47078 * 299.99898 * 3 2 1 36 36 H 1.09005 * 109.46876 * 60.00105 * 3 2 1 37 37 H 1.08997 * 109.47446 * 300.00365 * 4 2 1 38 38 H 1.09003 * 109.47119 * 60.00764 * 4 2 1 39 39 H 1.09007 * 109.47390 * 180.02562 * 4 2 1 40 40 H 1.08992 * 110.75451 * 321.69605 * 10 8 6 41 41 H 1.09004 * 110.75394 * 84.88065 * 10 8 6 42 42 H 0.96700 * 113.99512 * 294.77540 * 13 11 10 43 43 H 0.97005 * 119.99870 * 82.16667 * 16 14 11 44 44 H 1.09001 * 109.47423 * 60.00430 * 20 17 16 45 45 H 1.09001 * 109.47260 * 300.00293 * 20 17 16 46 46 H 1.09001 * 109.47002 * 299.99604 * 21 20 17 47 47 H 1.08993 * 109.46955 * 60.00042 * 21 20 17 48 48 H 0.96996 * 120.00505 * 179.97438 * 25 24 22 49 49 H 1.09003 * 110.03082 * 119.28371 * 30 14 11 50 50 H 1.08997 * 110.03974 * 240.71328 * 30 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6845 1.1856 6 6 1.6532 -1.9684 1.3380 7 8 0.9565 -2.5027 0.5080 8 6 2.1171 -2.7433 2.5443 9 1 1.8011 -2.2476 3.4621 10 6 3.6567 -2.9116 2.5214 11 6 3.8767 -4.1657 3.4032 12 1 4.8252 -4.6432 3.1576 13 8 3.8349 -3.8168 4.7884 14 6 2.6968 -5.0924 3.0442 15 1 3.0027 -5.8094 2.2822 16 7 2.2318 -5.7992 4.2401 17 16 2.7440 -7.3453 4.5397 18 8 2.4891 -8.0401 3.3267 19 8 2.0817 -7.7066 5.7440 20 6 4.5292 -7.1848 4.8184 21 6 5.1261 -8.5634 5.1085 22 6 6.6091 -8.4299 5.3407 23 1 7.0789 -7.4590 5.2863 24 6 7.3662 -9.5474 5.6215 25 7 6.7942 -10.7298 5.6872 26 14 9.2046 -9.3821 5.9085 27 1 9.4461 -8.4848 7.0669 28 1 9.7840 -10.7201 6.1903 29 1 9.8453 -8.8099 4.6972 30 6 1.5781 -4.1881 2.4981 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0275 0.0005 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6766 -1.7490 -1.2491 38 1 1.6768 -0.2075 -2.1392 39 1 3.1300 -0.7217 -1.2489 40 1 4.0111 -3.0865 1.5057 41 1 4.1470 -2.0400 2.9552 42 1 4.5544 -3.2349 5.0692 43 1 1.6239 -5.3616 4.8565 44 1 4.7065 -6.5256 5.6682 45 1 4.9995 -6.7654 3.9290 46 1 4.6558 -8.9830 5.9979 47 1 4.9488 -9.2222 4.2585 48 1 7.3268 -11.5161 5.8844 49 1 1.3416 -4.4656 1.4709 50 1 0.6891 -4.2750 3.1228 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583651734.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:35 Heat of formation + Delta-G solvation = -224.499909 kcal Electronic energy + Delta-G solvation = -31983.426793 eV Core-core repulsion = 27523.480880 eV Total energy + Delta-G solvation = -4459.945913 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34024 -39.36536 -37.30350 -36.50354 -35.40175 -35.16302 -34.52128 -33.85998 -33.40297 -31.13160 -28.45946 -27.85724 -27.82165 -27.78541 -25.56515 -23.71477 -21.69714 -21.23701 -20.57400 -19.75108 -19.06057 -18.02885 -17.33778 -16.95943 -16.90462 -16.76796 -16.38060 -15.96263 -15.33451 -15.21664 -15.07982 -14.65443 -14.55441 -14.34459 -14.09540 -13.88159 -13.34782 -13.31890 -12.99205 -12.73472 -12.61566 -12.53865 -12.39763 -12.33589 -12.31735 -11.90009 -11.71955 -11.69791 -11.65993 -11.52384 -11.47270 -11.35990 -11.19586 -11.09733 -11.05237 -10.93815 -10.76284 -10.43753 -10.40128 -10.33135 -9.96937 -9.76964 -9.43253 -8.97224 -8.48791 -6.10847 -4.16311 0.88070 1.91138 2.30754 3.15493 3.26862 3.31981 3.33422 3.88390 4.01990 4.21611 4.26389 4.30240 4.32996 4.37328 4.41796 4.48781 4.72286 4.86528 4.90064 4.98382 5.04700 5.05738 5.11650 5.13637 5.24091 5.26942 5.30523 5.35124 5.39972 5.41489 5.43425 5.55273 5.58016 5.63401 5.73428 5.83286 5.84104 5.87169 5.92499 6.15852 6.22701 6.54618 7.19960 7.33357 7.39998 7.51685 7.53306 7.81651 8.19696 8.86713 9.47994 11.00162 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.002216 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.067549 B =12634.136805 C =13639.361471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.349 6.349 6 C 0.471 3.529 7 O -0.500 6.500 8 C -0.083 4.083 9 H 0.117 0.883 10 C -0.141 4.141 11 C 0.077 3.923 12 H 0.077 0.923 13 O -0.546 6.546 14 C 0.156 3.844 15 H 0.111 0.889 16 N -1.104 6.104 17 S 2.592 3.408 18 O -0.971 6.971 19 O -0.968 6.968 20 C -0.584 4.584 21 C 0.027 3.973 22 C -0.518 4.518 23 H 0.060 0.940 24 C 0.057 3.943 25 N -0.890 5.890 26 Si 0.900 3.100 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.276 1.276 30 C -0.116 4.116 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.379 0.621 43 H 0.416 0.584 44 H 0.124 0.876 45 H 0.113 0.887 46 H 0.033 0.967 47 H 0.032 0.968 48 H 0.265 0.735 49 H 0.096 0.904 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 25.835 -10.620 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.079 3.921 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.267 6.267 6 C 0.314 3.686 7 O -0.388 6.388 8 C -0.102 4.102 9 H 0.135 0.865 10 C -0.180 4.180 11 C 0.015 3.985 12 H 0.095 0.905 13 O -0.350 6.350 14 C 0.047 3.953 15 H 0.128 0.872 16 N -0.860 5.860 17 S 2.689 3.311 18 O -0.960 6.960 19 O -0.958 6.958 20 C -0.718 4.718 21 C -0.012 4.012 22 C -0.558 4.558 23 H 0.078 0.922 24 C -0.146 4.146 25 N -0.528 5.528 26 Si 0.727 3.273 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.202 1.202 30 C -0.155 4.155 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.226 0.774 43 H 0.249 0.751 44 H 0.143 0.857 45 H 0.132 0.868 46 H 0.051 0.949 47 H 0.050 0.950 48 H 0.075 0.925 49 H 0.115 0.885 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.347 24.263 -11.010 28.583 hybrid contribution 1.777 1.166 0.316 2.148 sum -8.571 25.429 -10.694 28.887 Atomic orbital electron populations 1.22491 0.94018 1.04806 1.02733 1.22198 0.94411 0.92318 0.83137 1.21852 1.02278 0.92601 1.03050 1.22495 1.01757 1.03225 0.96595 1.86562 1.69732 1.25365 1.45015 1.23563 0.77095 0.80497 0.87430 1.90580 1.35157 1.69795 1.43218 1.21873 0.97760 0.95640 0.94978 0.86517 1.23180 0.93100 0.99773 1.01898 1.23205 0.99079 0.93983 0.82208 0.90488 1.86533 1.54097 1.71024 1.23388 1.21498 0.92484 0.93897 0.87415 0.87155 1.55599 1.62125 1.35340 1.32919 1.05542 0.78890 0.72558 0.74081 1.93543 1.84730 1.71038 1.46730 1.93550 1.73375 1.81092 1.47821 1.30436 1.20648 1.10444 1.10267 1.18960 0.97591 0.86328 0.98275 1.20948 0.91684 0.93831 1.49328 0.92174 1.25072 0.99021 0.95278 0.95184 1.69941 1.36243 0.98496 1.48149 0.86541 0.84713 0.77326 0.78720 1.20120 1.21115 1.20153 1.22462 0.98317 0.90650 1.04109 0.92022 0.91048 0.89737 0.91418 0.90368 0.91480 0.89697 0.91059 0.91924 0.89798 0.89431 0.77378 0.75051 0.85728 0.86813 0.94906 0.94961 0.92499 0.88510 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 8.37 37.16 0.31 -1.05 16 2 C 0.12 0.87 1.13 -90.62 -0.10 0.76 16 3 C -0.14 -0.75 8.85 37.16 0.33 -0.42 16 4 C -0.18 -1.37 8.37 37.15 0.31 -1.06 16 5 O -0.35 -3.11 9.89 -39.24 -0.39 -3.50 16 6 C 0.47 4.49 6.56 36.00 0.24 4.73 16 7 O -0.50 -5.75 10.92 -18.75 -0.20 -5.95 16 8 C -0.08 -0.68 3.34 -90.11 -0.30 -0.98 16 9 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 10 C -0.14 -1.00 6.03 -24.74 -0.15 -1.15 16 11 C 0.08 0.68 4.10 -25.07 -0.10 0.58 16 12 H 0.08 0.67 7.64 -51.93 -0.40 0.27 16 13 O -0.55 -4.87 12.58 -35.23 -0.44 -5.31 16 14 C 0.16 1.71 3.42 -66.81 -0.23 1.48 16 15 H 0.11 1.25 7.52 -51.93 -0.39 0.86 16 16 N -1.10 -14.34 4.57 -3.94 -0.02 -14.36 16 17 S 2.59 46.58 5.44 -107.50 -0.58 45.99 16 18 O -0.97 -20.14 17.42 -57.54 -1.00 -21.14 16 19 O -0.97 -20.52 18.08 -57.54 -1.04 -21.56 16 20 C -0.58 -11.01 6.00 37.16 0.22 -10.79 16 21 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 22 C -0.52 -14.15 9.11 -34.44 -0.31 -14.47 16 23 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 24 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 25 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 26 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 C -0.12 -1.12 5.95 -25.61 -0.15 -1.27 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.80 5.89 -51.93 -0.31 0.49 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.81 5.89 -51.93 -0.31 0.50 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.38 2.02 9.12 45.56 0.42 2.44 16 43 H 0.42 4.78 8.63 -34.47 -0.30 4.49 16 44 H 0.12 2.16 8.14 -51.92 -0.42 1.74 16 45 H 0.11 1.87 7.58 -51.92 -0.39 1.48 16 46 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 49 H 0.10 1.01 6.85 -51.93 -0.36 0.65 16 50 H 0.09 0.80 7.75 -51.93 -0.40 0.40 16 LS Contribution 413.37 15.07 6.23 6.23 Total: -1.00 -36.67 413.37 -9.38 -46.05 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.46 Total: 4.82 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -0.18 Total: -21.58 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.72 Total: -40.06 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -3.08 Total: -57.47 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 46.58 SS G_CDS: -0.58 Total: 45.99 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.67 -9.38 -46.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583651734.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.449 kcal (2) G-P(sol) polarization free energy of solvation -36.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds