Wall clock time and date at job start Tue Mar 31 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46814 * 2 1 4 4 C 1.52999 * 109.46692 * 239.99983 * 2 1 3 5 5 O 1.45193 * 109.47339 * 120.00081 * 2 1 3 6 6 C 1.34229 * 117.00365 * 59.99751 * 5 2 1 7 7 O 1.20833 * 119.99678 * 0.02562 * 6 5 2 8 8 C 1.50695 * 120.00418 * 180.02562 * 6 5 2 9 9 H 1.09000 * 110.81921 * 61.88508 * 8 6 5 10 10 C 1.54891 * 110.75328 * 298.54845 * 8 6 5 11 11 C 1.54276 * 104.19321 * 203.74201 * 10 8 6 12 12 H 1.08995 * 110.07187 * 264.29947 * 11 10 8 13 13 O 1.42897 * 110.03088 * 142.89284 * 11 10 8 14 14 C 1.53871 * 106.59790 * 23.61214 * 11 10 8 15 15 H 1.09000 * 110.03252 * 119.33491 * 14 11 10 16 16 N 1.46506 * 110.03165 * 240.71575 * 14 11 10 17 17 S 1.65597 * 119.99791 * 262.91141 * 16 14 11 18 18 O 1.42101 * 104.27612 * 181.07220 * 17 16 14 19 19 O 1.42101 * 104.27805 * 308.92463 * 17 16 14 20 20 C 1.81397 * 104.45432 * 64.99519 * 17 16 14 21 21 C 1.52999 * 109.47238 * 179.97438 * 20 17 16 22 22 C 1.50707 * 109.46757 * 180.02562 * 21 20 17 23 23 H 1.07996 * 120.00022 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99585 * 179.97438 * 22 21 20 25 25 N 1.31511 * 120.00186 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99852 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46895 * 90.00307 * 26 24 22 28 28 H 1.48499 * 109.47205 * 210.00204 * 26 24 22 29 29 H 1.48502 * 109.47112 * 330.00596 * 26 24 22 30 30 C 1.54261 * 106.64236 * 0.02562 * 14 11 10 31 31 H 1.09000 * 109.46652 * 300.00141 * 1 2 3 32 32 H 1.08994 * 109.47134 * 60.00151 * 1 2 3 33 33 H 1.09000 * 109.46734 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46818 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47407 * 300.00181 * 3 2 1 36 36 H 1.08997 * 109.47291 * 60.00054 * 3 2 1 37 37 H 1.08991 * 109.47616 * 299.99840 * 4 2 1 38 38 H 1.09000 * 109.47033 * 60.00122 * 4 2 1 39 39 H 1.09004 * 109.46635 * 179.97438 * 4 2 1 40 40 H 1.09000 * 110.48534 * 85.06719 * 10 8 6 41 41 H 1.09003 * 110.59956 * 322.47351 * 10 8 6 42 42 H 0.96708 * 113.99593 * 62.83680 * 13 11 10 43 43 H 0.96995 * 120.00050 * 82.63225 * 16 14 11 44 44 H 1.09000 * 109.46873 * 300.00475 * 20 17 16 45 45 H 1.09004 * 109.46684 * 59.99917 * 20 17 16 46 46 H 1.09002 * 109.47112 * 300.00009 * 21 20 17 47 47 H 1.08998 * 109.46926 * 60.00162 * 21 20 17 48 48 H 0.96999 * 120.00163 * 180.02562 * 25 24 22 49 49 H 1.09004 * 110.48773 * 95.04708 * 30 14 11 50 50 H 1.09003 * 110.49283 * 217.69091 * 30 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6535 -1.9684 1.3379 7 8 0.9567 -2.5028 0.5078 8 6 2.1175 -2.7434 2.5441 9 1 1.7372 -2.2954 3.4622 10 6 3.6634 -2.8339 2.5769 11 6 3.9509 -4.0889 3.4269 12 1 4.1362 -3.8048 4.4627 13 8 5.0813 -4.7875 2.9016 14 6 2.6963 -4.9756 3.3398 15 1 2.9499 -5.9391 2.8977 16 7 2.1263 -5.1711 4.6752 17 16 2.4827 -6.5406 5.5352 18 8 1.7481 -6.3970 6.7431 19 8 2.2076 -7.6029 4.6324 20 6 4.2643 -6.4231 5.8558 21 6 4.7205 -7.6458 6.6544 22 6 6.2005 -7.5478 6.9212 23 1 6.7596 -6.6982 6.5579 24 6 6.8405 -8.5423 7.6300 25 7 6.1596 -9.5766 8.0728 26 14 8.6751 -8.4212 7.9601 27 1 8.9013 -7.7055 9.2415 28 1 9.2537 -9.7861 8.0466 29 1 9.3289 -7.6756 6.8547 30 6 1.6898 -4.2297 2.4397 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7209 -1.2495 40 1 4.0875 -1.9479 3.0493 41 1 4.0619 -2.9559 1.5697 42 1 5.9044 -4.2805 2.9286 43 1 1.5434 -4.4964 5.0572 44 1 4.8022 -6.3859 4.9085 45 1 4.4717 -5.5183 6.4271 46 1 4.1826 -7.6825 7.6017 47 1 4.5130 -8.5507 6.0834 48 1 6.6098 -10.2760 8.5718 49 1 1.7679 -4.5782 1.4098 50 1 0.6739 -4.3620 2.8120 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583651735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:39 Heat of formation + Delta-G solvation = -228.144889 kcal Electronic energy + Delta-G solvation = -31944.693332 eV Core-core repulsion = 27484.589361 eV Total energy + Delta-G solvation = -4460.103971 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.34777 -39.38334 -37.32164 -36.55728 -35.59491 -35.39851 -34.54114 -33.85546 -33.35770 -31.12908 -28.28867 -27.96622 -27.83166 -27.81214 -25.57162 -23.78088 -21.71201 -21.27208 -20.59628 -19.81551 -19.21110 -18.00673 -17.35726 -17.30422 -16.90511 -16.57565 -16.40196 -16.07414 -15.37875 -15.23033 -14.92098 -14.63266 -14.55826 -14.41815 -14.22474 -14.01384 -13.36353 -13.30769 -12.95696 -12.84889 -12.65201 -12.50718 -12.48556 -12.36279 -12.33354 -11.87465 -11.72635 -11.72143 -11.67417 -11.56029 -11.47174 -11.40960 -11.22501 -11.16653 -11.06533 -10.92683 -10.77886 -10.48243 -10.39585 -10.32601 -10.04182 -9.81509 -9.52691 -9.04146 -8.48013 -6.09993 -4.15037 0.79596 1.88043 2.27483 3.05210 3.26959 3.33252 3.35831 3.83310 4.00746 4.07344 4.26611 4.29173 4.31913 4.39979 4.46036 4.50336 4.62931 4.74161 4.88065 4.94559 5.04397 5.05382 5.10349 5.16141 5.25215 5.25828 5.26588 5.28794 5.31995 5.40048 5.42052 5.53392 5.56953 5.72963 5.76352 5.78631 5.82423 5.82577 5.85695 6.08149 6.18960 6.55015 7.02796 7.33674 7.39984 7.48863 7.50899 7.83029 8.20504 8.88079 9.49177 11.01107 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.002204 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.821405 B =12699.790522 C =13766.777435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.349 6.349 6 C 0.474 3.526 7 O -0.499 6.499 8 C -0.091 4.091 9 H 0.118 0.882 10 C -0.142 4.142 11 C 0.078 3.922 12 H 0.078 0.922 13 O -0.555 6.555 14 C 0.149 3.851 15 H 0.116 0.884 16 N -1.119 6.119 17 S 2.588 3.412 18 O -0.968 6.968 19 O -0.964 6.964 20 C -0.588 4.588 21 C 0.029 3.971 22 C -0.516 4.516 23 H 0.061 0.939 24 C 0.056 3.944 25 N -0.891 5.891 26 Si 0.900 3.100 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.273 1.273 30 C -0.105 4.105 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.383 0.617 43 H 0.412 0.588 44 H 0.128 0.872 45 H 0.118 0.882 46 H 0.032 0.968 47 H 0.033 0.967 48 H 0.264 0.736 49 H 0.096 0.904 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.926 23.239 -16.496 29.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.080 3.920 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.267 6.267 6 C 0.317 3.683 7 O -0.386 6.386 8 C -0.110 4.110 9 H 0.136 0.864 10 C -0.180 4.180 11 C 0.017 3.983 12 H 0.096 0.904 13 O -0.360 6.360 14 C 0.041 3.959 15 H 0.134 0.866 16 N -0.875 5.875 17 S 2.686 3.314 18 O -0.958 6.958 19 O -0.954 6.954 20 C -0.722 4.722 21 C -0.010 4.010 22 C -0.556 4.556 23 H 0.079 0.921 24 C -0.146 4.146 25 N -0.529 5.529 26 Si 0.727 3.273 27 H -0.206 1.206 28 H -0.211 1.211 29 H -0.198 1.198 30 C -0.144 4.144 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.232 0.768 43 H 0.245 0.755 44 H 0.147 0.853 45 H 0.136 0.864 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.074 0.926 49 H 0.115 0.885 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.133 21.656 -16.629 28.791 hybrid contribution 1.678 1.306 0.328 2.151 sum -7.455 22.962 -16.301 29.129 Atomic orbital electron populations 1.22495 0.93993 1.04801 1.02768 1.22202 0.94422 0.92319 0.83101 1.21852 1.02288 0.92575 1.03077 1.22492 1.01757 1.03201 0.96603 1.86561 1.69720 1.25339 1.45054 1.23415 0.77128 0.80488 0.87263 1.90593 1.35050 1.69893 1.43071 1.22078 0.97904 0.95761 0.95288 0.86418 1.23088 0.93008 0.99484 1.02403 1.23123 0.87409 0.90769 0.97013 0.90442 1.86573 1.18954 1.44993 1.85524 1.21216 0.90774 1.01091 0.82816 0.86612 1.55984 1.62946 1.41588 1.26973 1.05731 0.79120 0.73092 0.73429 1.93554 1.70498 1.85286 1.46483 1.93549 1.84335 1.53241 1.64240 1.30474 1.20503 1.10338 1.10902 1.18953 0.98655 0.88939 0.94482 1.20979 0.92297 1.06885 1.35396 0.92063 1.25074 0.98703 0.95234 0.95590 1.69953 1.36203 1.09924 1.36804 0.86474 0.84744 0.77442 0.78618 1.20566 1.21060 1.19782 1.22597 0.99632 0.90609 1.01599 0.91987 0.91033 0.89746 0.91414 0.90360 0.91447 0.89723 0.91055 0.91932 0.89673 0.89667 0.76846 0.75459 0.85344 0.86395 0.94995 0.94844 0.92578 0.88532 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 8.37 37.16 0.31 -1.01 16 2 C 0.12 0.85 1.13 -90.61 -0.10 0.75 16 3 C -0.14 -0.74 8.85 37.16 0.33 -0.41 16 4 C -0.18 -1.35 8.37 37.16 0.31 -1.04 16 5 O -0.35 -3.05 9.87 -39.26 -0.39 -3.44 16 6 C 0.47 4.43 6.57 36.00 0.24 4.67 16 7 O -0.50 -5.65 11.29 -18.76 -0.21 -5.86 16 8 C -0.09 -0.71 3.40 -89.71 -0.31 -1.02 16 9 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 10 C -0.14 -1.04 5.97 -25.07 -0.15 -1.19 16 11 C 0.08 0.73 3.81 -25.61 -0.10 0.64 16 12 H 0.08 0.68 7.92 -51.93 -0.41 0.26 16 13 O -0.55 -5.91 12.64 -35.23 -0.45 -6.35 16 14 C 0.15 1.67 3.28 -66.81 -0.22 1.45 16 15 H 0.12 1.52 7.33 -51.93 -0.38 1.14 16 16 N -1.12 -13.49 5.22 -3.94 -0.02 -13.51 16 17 S 2.59 45.56 5.44 -107.50 -0.58 44.97 16 18 O -0.97 -19.72 18.08 -57.54 -1.04 -20.76 16 19 O -0.96 -20.15 17.41 -57.54 -1.00 -21.15 16 20 C -0.59 -11.08 5.92 37.16 0.22 -10.86 16 21 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 22 C -0.52 -14.13 9.11 -34.44 -0.31 -14.45 16 23 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 24 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 25 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 26 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 30 C -0.11 -0.99 5.51 -25.00 -0.14 -1.13 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.78 5.89 -51.93 -0.31 0.47 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.79 5.89 -51.93 -0.31 0.49 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.65 7.98 -51.93 -0.41 0.24 16 42 H 0.38 2.57 9.11 45.56 0.42 2.99 16 43 H 0.41 3.86 8.82 -34.47 -0.30 3.56 16 44 H 0.13 2.26 7.39 -51.92 -0.38 1.88 16 45 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 46 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.10 0.97 7.53 -51.93 -0.39 0.58 16 50 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 LS Contribution 414.49 15.07 6.25 6.25 Total: -1.00 -37.01 414.49 -9.40 -46.41 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.51 Total: 4.62 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -0.15 Total: -21.51 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.72 Total: -39.27 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: -3.09 Total: -57.56 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 45.56 SS G_CDS: -0.58 Total: 44.97 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -37.01 -9.40 -46.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583651735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.737 kcal (2) G-P(sol) polarization free energy of solvation -37.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds