Wall clock time and date at job start Tue Mar 31 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30178 * 126.80125 * 2 1 4 4 O 1.20918 * 111.60882 * 180.02562 * 3 2 1 5 5 C 1.34051 * 111.56061 * 359.76240 * 4 3 2 6 6 C 1.50699 * 126.77386 * 180.28557 * 5 4 3 7 7 C 1.35444 * 106.44521 * 0.38335 * 5 4 3 8 8 C 1.50708 * 128.00225 * 179.91694 * 7 5 4 9 9 C 1.53000 * 109.46585 * 274.20983 * 8 7 5 10 10 H 1.09007 * 109.47189 * 54.19608 * 9 8 7 11 11 C 1.53003 * 109.46692 * 174.19067 * 9 8 7 12 12 N 1.46502 * 109.47567 * 294.19189 * 9 8 7 13 13 S 1.65591 * 119.99757 * 125.45334 * 12 9 8 14 14 O 1.42099 * 106.40817 * 311.06990 * 13 12 9 15 15 O 1.42109 * 106.39965 * 178.15178 * 13 12 9 16 16 C 1.76196 * 107.22369 * 64.61361 * 13 12 9 17 17 C 1.37641 * 120.13042 * 243.45320 * 16 13 12 18 18 C 1.38620 * 120.24493 * 180.31477 * 17 16 13 19 19 C 1.38658 * 120.50315 * 359.67392 * 18 17 16 20 20 C 1.37598 * 120.24814 * 359.97438 * 19 18 17 21 21 C 1.40702 * 120.12812 * 63.14353 * 16 13 12 22 22 C 1.41401 * 120.24193 * 359.97438 * 21 16 13 23 23 H 1.07997 * 119.99824 * 32.95816 * 22 21 16 24 24 C 1.39949 * 120.00011 * 212.95834 * 22 21 16 25 25 N 1.30817 * 119.99756 * 191.62541 * 24 22 21 26 26 Si 1.86803 * 119.99915 * 11.62837 * 24 22 21 27 27 H 1.48496 * 109.47017 * 266.92429 * 26 24 22 28 28 H 1.48501 * 109.47060 * 26.92097 * 26 24 22 29 29 H 1.48497 * 109.47226 * 146.92078 * 26 24 22 30 30 H 1.08995 * 109.47357 * 275.07133 * 1 2 3 31 31 H 1.09004 * 109.47316 * 35.07177 * 1 2 3 32 32 H 1.09004 * 109.47242 * 155.06618 * 1 2 3 33 33 H 1.08998 * 109.47214 * 270.11216 * 6 5 4 34 34 H 1.09011 * 109.46940 * 30.11335 * 6 5 4 35 35 H 1.08993 * 109.46987 * 150.10883 * 6 5 4 36 36 H 1.08998 * 109.46891 * 154.21918 * 8 7 5 37 37 H 1.08999 * 109.47324 * 34.21146 * 8 7 5 38 38 H 1.09006 * 109.46710 * 180.02562 * 11 9 8 39 39 H 1.09003 * 109.47111 * 300.00069 * 11 9 8 40 40 H 1.08994 * 109.47134 * 60.00365 * 11 9 8 41 41 H 0.96998 * 119.99923 * 305.45205 * 12 9 8 42 42 H 1.07996 * 119.87340 * 0.02562 * 17 16 13 43 43 H 1.07996 * 119.74237 * 179.69457 * 18 17 16 44 44 H 1.08001 * 119.86926 * 180.02562 * 19 18 17 45 45 H 1.07996 * 120.12179 * 180.02562 * 20 19 18 46 46 H 0.97004 * 119.99896 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 -0.0005 5 6 3.6024 -0.6068 0.0043 6 6 4.9021 -1.3694 0.0112 7 6 2.3539 -1.1319 -0.0007 8 6 1.9591 -2.5864 -0.0001 9 6 1.9344 -3.1086 -1.4380 10 1 2.8941 -2.9074 -1.9142 11 6 1.6761 -4.6166 -1.4285 12 7 0.8684 -2.4352 -2.1840 13 16 1.2164 -1.6538 -3.6019 14 8 2.3437 -0.8295 -3.3397 15 8 -0.0172 -1.1495 -4.0953 16 6 1.7506 -2.8757 -4.7534 17 6 3.0330 -2.8413 -5.2521 18 6 3.4538 -3.7976 -6.1632 19 6 2.5925 -4.8022 -6.5773 20 6 1.3083 -4.8603 -6.0864 21 6 0.8700 -3.8942 -5.1618 22 6 -0.4475 -3.9438 -4.6508 23 1 -0.9685 -3.0286 -4.4110 24 6 -1.0765 -5.1787 -4.4558 25 7 -2.3592 -5.2268 -4.2034 26 14 -0.0843 -6.7582 -4.5558 27 1 -0.1498 -7.2973 -5.9379 28 1 1.3301 -6.4777 -4.2005 29 1 -0.6442 -7.7553 -3.6084 30 1 -0.3634 0.0908 1.0236 31 1 -0.3634 0.8411 -0.5905 32 1 -0.3634 -0.9319 -0.4332 33 1 5.2201 -1.5549 -1.0147 34 1 5.6636 -0.7849 0.5277 35 1 4.7628 -2.3201 0.5259 36 1 0.9688 -2.6938 0.4425 37 1 2.6814 -3.1587 0.5820 38 1 1.6589 -4.9887 -2.4529 39 1 2.4692 -5.1176 -0.8735 40 1 0.7165 -4.8178 -0.9524 41 1 -0.0412 -2.4470 -1.8473 42 1 3.7124 -2.0637 -4.9360 43 1 4.4602 -3.7600 -6.5530 44 1 2.9311 -5.5423 -7.2873 45 1 0.6393 -5.6439 -6.4101 46 1 -2.7952 -6.0827 -4.0686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585115083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:47 Heat of formation + Delta-G solvation = -12.304042 kcal Electronic energy + Delta-G solvation = -32847.716041 eV Core-core repulsion = 28638.854640 eV Total energy + Delta-G solvation = -4208.861401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.129 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.61484 -37.95802 -37.28594 -36.23881 -34.91047 -34.32248 -33.87585 -33.33091 -30.79723 -30.20163 -30.08285 -28.47336 -28.24934 -26.39826 -25.45566 -22.17450 -22.02464 -21.25643 -20.80158 -19.85649 -18.85457 -17.79069 -17.37724 -17.17910 -16.72610 -16.32907 -15.60083 -15.42791 -14.53632 -14.41332 -14.27707 -13.99464 -13.78587 -13.53895 -13.45456 -13.32665 -13.19603 -12.95630 -12.90653 -12.66006 -12.53992 -12.29391 -12.12769 -11.94837 -11.85017 -11.53292 -11.37206 -11.27374 -11.17010 -11.05735 -10.99724 -10.86982 -10.66895 -10.60669 -10.38019 -10.04306 -9.64454 -9.55871 -9.41086 -9.04427 -8.67936 -8.28686 -7.87851 -7.22085 -4.93162 1.46842 1.75078 2.01588 2.45825 2.47600 2.89108 2.97758 3.06129 3.37005 3.70368 3.84206 4.19839 4.42211 4.63595 4.66896 4.87149 5.00805 5.08876 5.15127 5.33871 5.38343 5.44551 5.49221 5.51194 5.60848 5.69090 5.73140 5.77998 5.80362 5.85766 5.87458 5.92272 5.96545 6.09632 6.14049 6.17899 6.33748 6.38892 6.53782 6.60812 6.67192 6.90106 7.02076 7.18335 7.36829 7.49252 7.62568 7.77628 8.12309 8.25751 8.48003 8.57090 9.76377 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.004458 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.345694 B = 6279.892646 C = 6740.928760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.027 3.973 3 N -0.369 5.369 4 O 0.096 5.904 5 C -0.028 4.028 6 C -0.074 4.074 7 C -0.188 4.188 8 C -0.049 4.049 9 C 0.165 3.835 10 H 0.087 0.913 11 C -0.169 4.169 12 N -1.104 6.104 13 S 2.704 3.296 14 O -0.989 6.989 15 O -0.973 6.973 16 C -0.769 4.769 17 C 0.015 3.985 18 C -0.256 4.256 19 C -0.045 4.045 20 C -0.234 4.234 21 C 0.168 3.832 22 C -0.456 4.456 23 H 0.125 0.875 24 C 0.091 3.909 25 N -0.782 5.782 26 Si 0.904 3.096 27 H -0.268 1.268 28 H -0.237 1.237 29 H -0.286 1.286 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.413 0.587 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.458 -1.458 9.995 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.132 4.132 3 N -0.075 5.075 4 O 0.031 5.969 5 C -0.091 4.091 6 C -0.131 4.131 7 C -0.192 4.192 8 C -0.089 4.089 9 C 0.057 3.943 10 H 0.105 0.895 11 C -0.228 4.228 12 N -0.861 5.861 13 S 2.800 3.200 14 O -0.980 6.980 15 O -0.963 6.963 16 C -0.863 4.863 17 C -0.005 4.005 18 C -0.276 4.276 19 C -0.063 4.063 20 C -0.253 4.253 21 C 0.162 3.838 22 C -0.483 4.483 23 H 0.143 0.857 24 C -0.132 4.132 25 N -0.404 5.404 26 Si 0.730 3.270 27 H -0.195 1.195 28 H -0.160 1.160 29 H -0.213 1.213 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.247 0.753 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.053 0.705 9.889 12.772 hybrid contribution -0.148 -2.387 -0.521 2.448 sum 7.905 -1.682 9.368 12.373 Atomic orbital electron populations 1.20238 0.86517 1.04197 1.03008 1.23309 0.98587 0.88641 1.02664 1.73747 0.89334 1.24082 1.20315 1.84740 1.21628 1.22563 1.67963 1.24069 0.98030 0.83879 1.03130 1.20323 0.90195 0.98277 1.04306 1.20767 0.91504 0.97299 1.09632 1.20340 1.02686 0.88530 0.97311 1.20551 0.90616 0.92006 0.91122 0.89480 1.22289 1.01848 0.94801 1.03885 1.55485 1.16995 1.72964 1.40613 1.01028 0.72943 0.73391 0.72642 1.93477 1.53678 1.65649 1.85157 1.93522 1.44613 1.78880 1.79277 1.29983 1.03592 1.25309 1.27409 1.20407 0.92910 0.94935 0.92228 1.20512 0.99561 1.00469 1.07097 1.20844 0.93518 0.95904 0.96077 1.21227 0.96855 1.03687 1.03555 1.17087 0.91126 0.88244 0.87298 1.20260 0.96069 0.96752 1.35187 0.85737 1.26181 0.94597 1.01242 0.91151 1.69648 1.09975 1.29553 1.31239 0.86462 0.82310 0.79619 0.78607 1.19452 1.16033 1.21325 0.90390 0.90490 0.89856 0.89141 0.90279 0.89296 0.89920 0.89701 0.90760 0.92217 0.91892 0.75300 0.86915 0.88095 0.88273 0.87672 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.38 36.00 0.37 -0.72 16 2 C 0.03 0.42 7.33 -82.10 -0.60 -0.18 16 3 N -0.37 -6.44 12.07 33.42 0.40 -6.03 16 4 O 0.10 1.55 11.20 17.15 0.19 1.75 16 5 C -0.03 -0.38 7.49 -35.31 -0.26 -0.64 16 6 C -0.07 -0.67 10.30 36.01 0.37 -0.30 16 7 C -0.19 -2.64 5.32 -104.42 -0.56 -3.20 16 8 C -0.05 -0.56 5.14 -27.88 -0.14 -0.70 16 9 C 0.17 2.31 2.90 -67.93 -0.20 2.11 16 10 H 0.09 1.26 7.60 -51.92 -0.39 0.87 16 11 C -0.17 -2.27 9.52 37.16 0.35 -1.91 16 12 N -1.10 -18.70 4.67 -4.89 -0.02 -18.73 16 13 S 2.70 57.42 4.95 -107.50 -0.53 56.88 16 14 O -0.99 -21.66 16.49 -57.17 -0.94 -22.61 16 15 O -0.97 -24.01 15.84 -57.17 -0.91 -24.92 16 16 C -0.77 -17.15 5.92 -38.87 -0.23 -17.39 16 17 C 0.02 0.31 9.53 -39.66 -0.38 -0.07 16 18 C -0.26 -5.01 10.05 -39.29 -0.39 -5.41 16 19 C -0.04 -0.90 10.02 -39.66 -0.40 -1.29 16 20 C -0.23 -5.23 6.98 -38.87 -0.27 -5.50 16 21 C 0.17 3.95 5.08 -106.82 -0.54 3.41 16 22 C -0.46 -11.21 8.60 -37.74 -0.32 -11.54 16 23 H 0.13 3.34 5.83 -52.49 -0.31 3.03 16 24 C 0.09 2.13 5.47 -17.34 -0.09 2.03 16 25 N -0.78 -18.72 13.93 55.55 0.77 -17.95 16 26 Si 0.90 18.34 24.23 -169.99 -4.12 14.22 16 27 H -0.27 -5.41 6.72 56.52 0.38 -5.03 16 28 H -0.24 -4.77 6.37 56.52 0.36 -4.41 16 29 H -0.29 -5.56 7.11 56.52 0.40 -5.16 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.04 6.68 -51.93 -0.35 0.69 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 35 H 0.09 0.61 7.54 -51.93 -0.39 0.22 16 36 H 0.08 0.85 8.04 -51.93 -0.42 0.44 16 37 H 0.08 0.74 7.57 -51.93 -0.39 0.34 16 38 H 0.07 1.22 7.63 -51.93 -0.40 0.82 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.41 6.49 7.92 -34.46 -0.27 6.22 16 42 H 0.11 2.15 7.33 -52.49 -0.38 1.76 16 43 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 45 H 0.11 2.30 4.66 -52.49 -0.24 2.06 16 46 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -31.62 387.68 -8.74 -40.36 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -6.13 Total: 12.47 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: -3.30 Total: -41.29 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 1.15 Total: -42.71 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -1.66 Total: -45.78 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -4.12 Total: 14.22 kcal Atomic # 16 Polarization: 57.42 SS G_CDS: -0.53 Total: 56.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.62 -8.74 -40.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585115083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.057 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds