Wall clock time and date at job start Tue Mar 31 2020 06:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30171 * 126.79882 * 2 1 4 4 O 1.20925 * 111.59989 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56909 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.77770 * 179.97438 * 5 4 3 7 7 C 1.35450 * 106.44508 * 0.02562 * 5 4 3 8 8 C 1.50701 * 128.00821 * 179.97438 * 7 5 4 9 9 C 1.52993 * 109.46995 * 89.99774 * 8 7 5 10 10 H 1.09005 * 109.47259 * 305.00016 * 9 8 7 11 11 C 1.52998 * 109.47142 * 185.00112 * 9 8 7 12 12 N 1.46495 * 109.47143 * 65.00447 * 9 8 7 13 13 S 1.65606 * 120.00078 * 208.04779 * 12 9 8 14 14 O 1.42100 * 106.40410 * 174.86122 * 13 12 9 15 15 O 1.42098 * 106.40201 * 307.78978 * 13 12 9 16 16 C 1.76201 * 107.21638 * 61.32752 * 13 12 9 17 17 C 1.37641 * 120.12754 * 248.68174 * 16 13 12 18 18 C 1.38604 * 120.25104 * 180.02562 * 17 16 13 19 19 C 1.38660 * 120.50362 * 359.97023 * 18 17 16 20 20 C 1.37597 * 120.24608 * 0.02562 * 19 18 17 21 21 C 1.40694 * 120.13213 * 68.39983 * 16 13 12 22 22 C 1.41401 * 120.24012 * 0.02562 * 21 16 13 23 23 H 1.08001 * 119.99829 * 322.75181 * 22 21 16 24 24 C 1.39946 * 120.00130 * 142.75882 * 22 21 16 25 25 N 1.30826 * 119.99800 * 352.82304 * 24 22 21 26 26 Si 1.86791 * 120.00314 * 172.82646 * 24 22 21 27 27 H 1.48507 * 109.47106 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47416 * 119.99596 * 26 24 22 29 29 H 1.48498 * 109.47482 * 239.99791 * 26 24 22 30 30 H 1.09009 * 109.47018 * 269.94696 * 1 2 3 31 31 H 1.09005 * 109.47314 * 29.94579 * 1 2 3 32 32 H 1.08997 * 109.47317 * 149.94763 * 1 2 3 33 33 H 1.09010 * 109.46866 * 0.02990 * 6 5 4 34 34 H 1.09006 * 109.46878 * 120.02315 * 6 5 4 35 35 H 1.08992 * 109.47276 * 240.02717 * 6 5 4 36 36 H 1.08996 * 109.47258 * 210.00248 * 8 7 5 37 37 H 1.09006 * 109.46758 * 330.00292 * 8 7 5 38 38 H 1.08999 * 109.47706 * 300.00533 * 11 9 8 39 39 H 1.09004 * 109.47314 * 60.00218 * 11 9 8 40 40 H 1.09002 * 109.47625 * 179.97438 * 11 9 8 41 41 H 0.96993 * 120.00162 * 28.04957 * 12 9 8 42 42 H 1.08003 * 119.87302 * 359.97438 * 17 16 13 43 43 H 1.08006 * 119.75572 * 179.97438 * 18 17 16 44 44 H 1.07997 * 119.87892 * 180.02562 * 19 18 17 45 45 H 1.07998 * 120.12998 * 179.97438 * 20 19 18 46 46 H 0.96998 * 120.00233 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6068 -0.0004 6 6 4.9021 -1.3696 -0.0014 7 6 2.3539 -1.1321 -0.0003 8 6 1.9589 -2.5864 -0.0006 9 6 1.8257 -3.0790 1.4417 10 1 2.7521 -2.8803 1.9806 11 6 1.5474 -4.5834 1.4432 12 7 0.7193 -2.3772 2.0971 13 16 0.7410 -2.1457 3.7368 14 8 -0.3899 -1.3419 4.0436 15 8 0.9688 -3.4217 4.3191 16 6 2.1603 -1.1694 4.1069 17 6 3.2176 -1.7203 4.7948 18 6 4.3351 -0.9545 5.0877 19 6 4.4022 0.3727 4.6921 20 6 3.3571 0.9444 4.0034 21 6 2.2199 0.1747 3.6954 22 6 1.1420 0.7499 2.9835 23 1 0.6003 0.1627 2.2567 24 6 0.7773 2.0800 3.2205 25 7 1.3376 2.7481 4.1959 26 14 -0.5096 2.9017 2.1444 27 1 -0.9858 1.9385 1.1192 28 1 -1.6538 3.3362 2.9853 29 1 0.0880 4.0835 1.4727 30 1 -0.3633 -0.0010 1.0278 31 1 -0.3634 0.8905 -0.5130 32 1 -0.3634 -0.8895 -0.5146 33 1 5.7357 -0.6671 -0.0018 34 1 4.9560 -1.9968 0.8885 35 1 4.9548 -1.9964 -0.8915 36 1 1.0048 -2.7037 -0.5143 37 1 2.7226 -3.1701 -0.5148 38 1 0.6211 -4.7822 0.9043 39 1 2.3706 -5.1057 0.9555 40 1 1.4529 -4.9345 2.4708 41 1 -0.0260 -2.0481 1.5708 42 1 3.1759 -2.7531 5.1081 43 1 5.1600 -1.3949 5.6283 44 1 5.2780 0.9600 4.9254 45 1 3.4112 1.9784 3.6966 46 1 1.0846 3.6699 4.3605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585115084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:51 Heat of formation + Delta-G solvation = -3.781878 kcal Electronic energy + Delta-G solvation = -34050.677532 eV Core-core repulsion = 29842.185680 eV Total energy + Delta-G solvation = -4208.491852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.129 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.32400 -37.62621 -37.22690 -36.17353 -34.80082 -34.11667 -33.74246 -33.12862 -30.34659 -30.01487 -29.53942 -28.35978 -28.12180 -26.27162 -25.40278 -22.00310 -21.65222 -21.12318 -20.62792 -19.69767 -18.72128 -17.67513 -17.08159 -16.97221 -16.40176 -16.02516 -15.67998 -15.33753 -14.40640 -14.32416 -14.25128 -13.81469 -13.37208 -13.28663 -13.26835 -13.13164 -13.02410 -12.83127 -12.67699 -12.53077 -12.36361 -12.16681 -11.86823 -11.77601 -11.55327 -11.39196 -11.21853 -11.14312 -11.03913 -11.02230 -10.90302 -10.69880 -10.48637 -10.41688 -10.15468 -9.78651 -9.51319 -9.35295 -9.16142 -8.84492 -8.57046 -8.01130 -7.48162 -6.90178 -4.64823 1.55207 2.01094 2.35650 2.77697 2.79791 3.05020 3.07951 3.15895 3.63360 3.88693 3.92497 4.52470 4.68598 4.73115 4.88114 4.95241 5.10431 5.20690 5.31295 5.43473 5.52114 5.53637 5.57473 5.62061 5.72497 5.79215 5.83498 5.92529 5.96550 6.02538 6.04444 6.06048 6.18970 6.25231 6.32277 6.40066 6.47918 6.53351 6.66917 6.86403 7.00980 7.12661 7.35959 7.47972 7.56720 7.72003 7.81870 7.96541 8.33890 8.63952 8.69910 8.90973 10.06261 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.008134 B = 0.007131 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3441.651841 B = 3925.503967 C = 4578.254451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.043 3.957 3 N -0.347 5.347 4 O 0.100 5.900 5 C -0.035 4.035 6 C -0.071 4.071 7 C -0.196 4.196 8 C -0.041 4.041 9 C 0.161 3.839 10 H 0.084 0.916 11 C -0.174 4.174 12 N -1.117 6.117 13 S 2.695 3.305 14 O -0.963 6.963 15 O -0.998 6.998 16 C -0.769 4.769 17 C -0.008 4.008 18 C -0.245 4.245 19 C -0.080 4.080 20 C -0.145 4.145 21 C 0.197 3.803 22 C -0.447 4.447 23 H 0.096 0.904 24 C 0.089 3.911 25 N -0.786 5.786 26 Si 0.897 3.103 27 H -0.241 1.241 28 H -0.275 1.275 29 H -0.271 1.271 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.407 0.593 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.115 0.885 46 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.142 -7.995 -10.822 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 N -0.051 5.051 4 O 0.034 5.966 5 C -0.098 4.098 6 C -0.128 4.128 7 C -0.200 4.200 8 C -0.080 4.080 9 C 0.053 3.947 10 H 0.102 0.898 11 C -0.233 4.233 12 N -0.873 5.873 13 S 2.793 3.207 14 O -0.954 6.954 15 O -0.988 6.988 16 C -0.864 4.864 17 C -0.028 4.028 18 C -0.265 4.265 19 C -0.099 4.099 20 C -0.164 4.164 21 C 0.192 3.808 22 C -0.476 4.476 23 H 0.113 0.887 24 C -0.131 4.131 25 N -0.410 5.410 26 Si 0.721 3.279 27 H -0.164 1.164 28 H -0.200 1.200 29 H -0.197 1.197 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.240 0.760 42 H 0.124 0.876 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.133 0.867 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.409 -6.864 -10.024 12.385 hybrid contribution -0.189 0.493 -0.452 0.695 sum 2.220 -6.371 -10.476 12.460 Atomic orbital electron populations 1.20669 0.87395 1.02605 1.04307 1.22944 0.98029 0.88340 1.02363 1.73767 0.88945 1.23641 1.18776 1.84791 1.22003 1.22122 1.67649 1.23981 0.97663 0.84344 1.03851 1.20249 0.90629 0.98550 1.03386 1.20625 0.91734 0.96888 1.10738 1.20144 1.02281 0.89243 0.96341 1.20600 0.89782 0.91037 0.93269 0.89798 1.22407 1.01690 0.95307 1.03936 1.55835 1.30697 1.72676 1.28115 1.01245 0.74778 0.73011 0.71698 1.93545 1.50141 1.69775 1.81920 1.93440 1.87268 1.42091 1.76006 1.29925 1.20687 1.10614 1.25198 1.20250 0.91992 0.97458 0.93087 1.20463 0.99415 0.95443 1.11225 1.20885 0.97495 0.94595 0.96924 1.21402 0.92952 0.99911 1.02185 1.16962 0.90857 0.87924 0.85049 1.19967 1.11574 0.96676 1.19367 0.88654 1.25756 0.96630 0.96739 0.93978 1.69759 1.36589 1.10891 1.23773 0.86475 0.80334 0.80183 0.80926 1.16438 1.20003 1.19665 0.88571 0.90873 0.90946 0.90372 0.89420 0.89918 0.90305 0.89820 0.92341 0.91985 0.90481 0.75960 0.87581 0.88865 0.89008 0.86660 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.43 7.78 36.01 0.28 -1.15 16 2 C 0.04 0.72 5.52 -82.10 -0.45 0.27 16 3 N -0.35 -6.67 11.95 33.42 0.40 -6.27 16 4 O 0.10 1.80 11.20 17.17 0.19 2.00 16 5 C -0.03 -0.52 7.49 -35.30 -0.26 -0.78 16 6 C -0.07 -0.74 10.23 36.01 0.37 -0.37 16 7 C -0.20 -2.88 5.30 -104.42 -0.55 -3.43 16 8 C -0.04 -0.47 5.10 -27.89 -0.14 -0.61 16 9 C 0.16 2.19 2.77 -67.94 -0.19 2.00 16 10 H 0.08 1.24 7.68 -51.93 -0.40 0.84 16 11 C -0.17 -2.04 9.45 37.16 0.35 -1.69 16 12 N -1.12 -18.42 4.53 -4.90 -0.02 -18.44 16 13 S 2.69 57.67 4.97 -107.50 -0.53 57.14 16 14 O -0.96 -23.78 16.44 -57.17 -0.94 -24.72 16 15 O -1.00 -21.99 15.59 -57.17 -0.89 -22.88 16 16 C -0.77 -17.90 5.53 -38.87 -0.21 -18.11 16 17 C -0.01 -0.18 9.53 -39.66 -0.38 -0.55 16 18 C -0.25 -5.23 10.05 -39.29 -0.39 -5.62 16 19 C -0.08 -1.78 10.02 -39.66 -0.40 -2.18 16 20 C -0.14 -3.57 8.62 -38.87 -0.33 -3.90 16 21 C 0.20 4.88 5.45 -106.82 -0.58 4.30 16 22 C -0.45 -10.92 6.29 -37.74 -0.24 -11.15 16 23 H 0.10 2.13 2.24 -52.49 -0.12 2.01 16 24 C 0.09 2.21 5.28 -17.34 -0.09 2.12 16 25 N -0.79 -20.26 11.24 55.55 0.62 -19.64 16 26 Si 0.90 19.05 28.98 -169.99 -4.93 14.12 16 27 H -0.24 -4.61 4.42 56.52 0.25 -4.36 16 28 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 29 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 30 H 0.10 1.68 4.02 -51.92 -0.21 1.47 16 31 H 0.07 1.11 7.40 -51.93 -0.38 0.72 16 32 H 0.07 0.85 7.66 -51.93 -0.40 0.45 16 33 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.79 7.66 -51.93 -0.40 0.39 16 37 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.08 6.97 -51.93 -0.36 0.72 16 41 H 0.41 6.08 6.95 -34.47 -0.24 5.84 16 42 H 0.11 2.17 7.33 -52.48 -0.38 1.78 16 43 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 44 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 45 H 0.12 2.98 6.75 -52.49 -0.35 2.62 16 46 H 0.28 6.72 8.30 -40.82 -0.34 6.39 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -31.92 375.78 -9.58 -41.50 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.91 Total: 12.38 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: -3.23 Total: -40.86 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 1.00 Total: -44.34 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -1.64 Total: -45.60 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.93 Total: 14.12 kcal Atomic # 16 Polarization: 57.67 SS G_CDS: -0.53 Total: 57.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.92 -9.58 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585115084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.718 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds