Wall clock time and date at job start Tue Mar 31 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.38571 * 124.80770 * 2 1 4 4 C 1.39082 * 132.25267 * 359.92785 * 3 2 1 5 5 C 1.37854 * 120.07725 * 180.02562 * 4 3 2 6 6 C 1.38712 * 120.55695 * 0.02562 * 5 4 3 7 7 Br 1.89099 * 119.89115 * 179.97438 * 6 5 4 8 8 C 1.37895 * 120.22111 * 359.97438 * 6 5 4 9 9 C 1.39336 * 119.78812 * 359.97438 * 8 6 5 10 10 C 1.47255 * 133.58408 * 179.97438 * 9 8 6 11 11 N 1.32587 * 134.24281 * 0.07241 * 10 9 8 12 12 N 1.28899 * 120.07456 * 180.02562 * 11 10 9 13 13 C 1.32937 * 121.57599 * 359.97438 * 12 11 10 14 14 S 1.76194 * 119.36420 * 180.02562 * 13 12 11 15 15 C 1.76195 * 100.00387 * 0.02562 * 14 13 12 16 16 H 1.08004 * 119.99675 * 0.02562 * 15 14 13 17 17 C 1.38774 * 120.00583 * 179.97438 * 15 14 13 18 18 N 1.31558 * 120.00435 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99852 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47289 * 89.99259 * 19 17 15 21 21 H 1.48497 * 109.47055 * 209.99563 * 19 17 15 22 22 H 1.48503 * 109.46681 * 329.99344 * 19 17 15 23 23 N 1.32686 * 121.27169 * 0.02562 * 13 12 11 24 24 C 1.32905 * 119.29405 * 359.97438 * 23 13 12 25 25 H 1.08996 * 109.47651 * 90.00253 * 1 2 3 26 26 H 1.09001 * 109.47648 * 210.00548 * 1 2 3 27 27 H 1.09004 * 109.47085 * 330.00362 * 1 2 3 28 28 H 1.08001 * 119.96155 * 0.07138 * 4 3 2 29 29 H 1.08003 * 119.71784 * 180.02562 * 5 4 3 30 30 H 1.08005 * 120.10593 * 179.72189 * 8 6 5 31 31 H 0.97006 * 120.00385 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2559 1.1378 0.0000 4 6 1.9445 2.4933 -0.0013 5 6 2.9524 3.4337 -0.0015 6 6 4.2829 3.0415 -0.0009 7 35 5.6504 4.3475 -0.0019 8 6 4.6117 1.7023 0.0004 9 6 3.6024 0.7417 0.0017 10 6 3.6024 -0.7308 0.0027 11 7 4.5522 -1.6559 0.0040 12 7 4.2367 -2.9057 0.0042 13 6 2.9682 -3.3034 0.0036 14 16 2.6031 -5.0271 0.0045 15 6 4.2372 -5.6860 0.0069 16 1 5.0878 -5.0204 0.0078 17 6 4.4314 -7.0601 0.0087 18 7 5.6515 -7.5521 0.0100 19 14 2.9602 -8.2113 0.0080 20 1 2.5722 -8.5178 -1.3923 21 1 3.3166 -9.4704 0.7099 22 1 1.8223 -7.5606 0.7058 23 7 1.9717 -2.4273 0.0022 24 6 2.2486 -1.1274 0.0020 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 0.9118 2.8094 -0.0014 29 1 2.7040 4.4848 -0.0021 30 1 5.6483 1.3990 -0.0037 31 1 5.7873 -8.5126 0.0109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826724912.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:53 Heat of formation + Delta-G solvation = 126.333453 kcal Electronic energy + Delta-G solvation = -20543.588042 eV Core-core repulsion = 17191.813361 eV Total energy + Delta-G solvation = -3351.774682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 363.969 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10066 -39.69773 -37.26726 -34.19564 -32.96291 -32.78735 -31.93063 -30.14933 -29.42883 -27.34108 -26.07454 -25.08689 -23.84284 -22.13333 -21.49387 -18.96825 -18.49976 -17.81871 -16.59893 -16.19621 -16.08458 -15.50684 -15.21926 -14.96352 -14.43478 -14.39076 -14.20795 -13.43751 -13.17953 -12.78036 -12.45315 -12.03594 -12.00160 -11.75221 -11.58503 -11.49866 -11.35776 -11.30719 -10.86425 -10.60049 -10.44930 -10.09291 -9.76932 -9.49389 -9.40751 -8.82279 -8.59183 -8.07532 -7.41099 -6.60752 -4.38449 0.44542 0.67030 1.44948 1.48060 1.61419 1.92496 2.34755 3.03699 3.10724 3.14898 3.36674 3.82799 3.94962 3.99295 4.06390 4.23220 4.41312 4.57482 4.68176 4.76861 4.80052 4.98266 5.04610 5.11780 5.30972 5.37441 5.49762 5.63110 5.83973 5.96411 6.10782 6.26301 6.65950 6.74633 7.39250 7.64021 8.51297 8.75731 9.04563 10.46653 Molecular weight = 363.97amu Principal moments of inertia in cm(-1) A = 0.020580 B = 0.002459 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.210274 B =11382.548770 C =12727.615139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.488 5.488 3 C 0.165 3.835 4 C -0.129 4.129 5 C -0.056 4.056 6 C -0.119 4.119 7 Br -0.050 7.050 8 C -0.018 4.018 9 C -0.060 4.060 10 C -0.052 4.052 11 N -0.126 5.126 12 N -0.275 5.275 13 C 0.245 3.755 14 S 0.141 5.859 15 C -0.543 4.543 16 H 0.131 0.869 17 C 0.104 3.896 18 N -0.845 5.845 19 Si 0.841 3.159 20 H -0.259 1.259 21 H -0.261 1.261 22 H -0.236 1.236 23 N -0.505 5.505 24 C 0.367 3.633 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 23.422 0.118 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.183 5.183 3 C 0.060 3.940 4 C -0.152 4.152 5 C -0.077 4.077 6 C -0.200 4.200 7 Br 0.035 6.965 8 C -0.040 4.040 9 C -0.068 4.068 10 C -0.206 4.206 11 N 0.019 4.981 12 N -0.134 5.134 13 C -0.125 4.125 14 S 0.384 5.616 15 C -0.691 4.691 16 H 0.148 0.852 17 C -0.109 4.109 18 N -0.477 5.477 19 Si 0.665 3.335 20 H -0.183 1.183 21 H -0.185 1.185 22 H -0.161 1.161 23 N -0.237 5.237 24 C 0.111 3.889 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.494 22.015 0.118 23.597 hybrid contribution -0.398 0.200 -0.023 0.447 sum -8.892 22.215 0.095 23.929 Atomic orbital electron populations 1.21999 0.75706 1.04631 1.03442 1.43396 1.06158 1.01307 1.67396 1.18252 0.88953 0.87738 0.99092 1.19983 1.00147 0.87922 1.07119 1.20773 0.89966 0.99725 0.97258 1.21392 0.93158 0.92829 1.12627 1.96702 1.49133 1.52684 1.97945 1.20542 0.99673 0.89420 0.94364 1.18110 0.92171 0.89542 1.06992 1.21230 0.91915 0.94459 1.12995 1.73321 1.28580 0.95684 1.00550 1.74527 1.16311 1.05303 1.17261 1.26798 0.87829 1.02699 0.95174 1.83038 1.14285 0.85153 1.79143 1.23013 0.91463 0.96259 1.58409 0.85163 1.24760 0.96260 0.96988 0.92874 1.69877 1.20158 1.14157 1.43554 0.87027 0.83352 0.82597 0.80569 1.18331 1.18545 1.16084 1.68158 1.35618 0.97767 1.22181 1.18989 0.88730 0.88221 0.92915 0.90999 0.89046 0.89801 0.84562 0.84152 0.83861 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.99 59.84 0.66 1.42 16 2 N -0.49 -6.74 3.21 -120.64 -0.39 -7.13 16 3 C 0.16 2.10 6.77 -83.71 -0.57 1.53 16 4 C -0.13 -1.17 9.85 -39.41 -0.39 -1.56 16 5 C -0.06 -0.49 9.75 -39.55 -0.39 -0.87 16 6 C -0.12 -1.27 6.22 -39.53 -0.25 -1.52 16 7 Br -0.05 -0.48 33.69 -68.01 -2.29 -2.77 16 8 C -0.02 -0.24 9.82 -39.30 -0.39 -0.62 16 9 C -0.06 -0.92 6.35 -105.03 -0.67 -1.59 16 10 C -0.05 -1.01 7.61 -82.81 -0.63 -1.64 16 11 N -0.13 -2.81 11.67 33.35 0.39 -2.42 16 12 N -0.27 -6.76 9.61 30.24 0.29 -6.46 16 13 C 0.24 5.71 7.90 -90.40 -0.71 5.00 16 14 S 0.14 3.32 19.81 -107.50 -2.13 1.19 16 15 C -0.54 -14.85 9.79 30.93 0.30 -14.55 16 16 H 0.13 3.94 6.74 -52.48 -0.35 3.58 16 17 C 0.10 2.79 5.50 -17.47 -0.10 2.69 16 18 N -0.84 -23.75 13.96 55.49 0.77 -22.97 16 19 Si 0.84 18.65 27.74 -169.99 -4.71 13.93 16 20 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.24 -4.98 6.74 56.52 0.38 -4.60 16 23 N -0.50 -10.48 10.53 -12.50 -0.13 -10.61 16 24 C 0.37 6.77 7.87 -155.48 -1.22 5.55 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.89 8.13 -51.93 -0.42 0.47 16 27 H 0.08 0.50 7.90 -51.93 -0.41 0.09 16 28 H 0.14 0.80 7.91 -52.49 -0.42 0.38 16 29 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 30 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 312.83 15.07 4.71 4.71 Total: -1.00 -30.54 312.83 -9.85 -40.39 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -2.03 Total: -1.72 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -4.34 Total: -6.15 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.94 Total: -49.59 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.71 Total: 13.93 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.13 Total: 1.19 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.54 -9.85 -40.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826724912.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.722 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds