Wall clock time and date at job start Tue Mar 31 2020 05:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00165 * 2 1 4 4 H 1.48496 * 109.46794 * 269.99523 * 3 2 1 5 5 H 1.48493 * 109.47279 * 29.99667 * 3 2 1 6 6 H 1.48500 * 109.46990 * 149.99614 * 3 2 1 7 7 C 1.37873 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00162 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99951 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.46494 * 120.00153 * 276.41527 * 10 9 7 12 12 C 1.52998 * 109.47196 * 275.00170 * 11 10 9 13 13 F 1.39900 * 109.47077 * 59.99701 * 12 11 10 14 14 F 1.39901 * 109.47266 * 180.02562 * 12 11 10 15 15 F 1.39898 * 109.47150 * 299.99634 * 12 11 10 16 16 S 1.65597 * 119.99786 * 96.41244 * 10 9 7 17 17 O 1.42096 * 106.40710 * 342.07567 * 16 10 9 18 18 O 1.42103 * 106.40128 * 209.14782 * 16 10 9 19 19 C 1.76204 * 107.21773 * 95.61650 * 16 10 9 20 20 C 1.38541 * 126.21862 * 114.03586 * 19 16 10 21 21 N 1.31492 * 109.00838 * 179.97438 * 20 19 16 22 22 N 1.40039 * 108.91133 * 0.02562 * 21 20 19 23 23 C 1.36539 * 132.42723 * 179.97438 * 22 21 20 24 24 C 1.34932 * 120.65853 * 179.97438 * 23 22 21 25 25 C 1.40479 * 120.43288 * 0.02562 * 24 23 22 26 26 C 1.36065 * 119.58621 * 0.02562 * 25 24 23 27 27 C 1.37130 * 107.45041 * 359.97438 * 22 21 20 28 28 H 0.97008 * 119.99965 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47590 * 60.00034 * 9 7 2 30 30 H 1.09000 * 109.47283 * 299.99670 * 9 7 2 31 31 H 1.09004 * 109.46803 * 34.99802 * 11 10 9 32 32 H 1.09002 * 109.47321 * 154.99572 * 11 10 9 33 33 H 1.07998 * 125.49938 * 359.97438 * 20 19 16 34 34 H 1.07990 * 119.67240 * 0.02562 * 23 22 21 35 35 H 1.08000 * 119.78914 * 179.74988 * 24 23 22 36 36 H 1.07994 * 120.20914 * 179.97438 * 25 24 23 37 37 H 1.08010 * 120.38239 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 2.7876 -4.0780 -1.2583 12 6 1.8405 -5.0806 -1.9205 13 9 0.6119 -4.4624 -2.1767 14 9 2.3991 -5.5253 -3.1236 15 9 1.6447 -6.1713 -1.0666 16 16 2.6180 -4.3455 1.4276 17 8 2.2501 -3.4452 2.4636 18 8 3.9411 -4.8351 1.2568 19 6 1.5835 -5.7604 1.6074 20 6 1.9958 -7.0830 1.5941 21 7 0.9475 -7.8601 1.7565 22 7 -0.1952 -7.0604 1.8818 23 6 -1.5145 -7.3611 2.0645 24 6 -2.4374 -6.3810 2.1558 25 6 -2.0547 -5.0325 2.0636 26 6 -0.7438 -4.7172 1.8805 27 6 0.2059 -5.7524 1.7885 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 2.9401 -3.2281 -1.9237 32 1 3.7449 -4.5595 -1.0587 33 1 3.0139 -7.4213 1.4703 34 1 -1.8223 -8.3936 2.1374 35 1 -3.4776 -6.6349 2.2962 36 1 -2.7964 -4.2510 2.1368 37 1 -0.4352 -3.6846 1.8083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952882799.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:28 Heat of formation + Delta-G solvation = -112.247020 kcal Electronic energy + Delta-G solvation = -32688.585259 eV Core-core repulsion = 27759.585738 eV Total energy + Delta-G solvation = -4928.999521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.065 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.72048 -47.28125 -47.16594 -42.03676 -37.35821 -36.61905 -36.06440 -35.21375 -33.08506 -32.68101 -30.83112 -29.28460 -28.69169 -26.44506 -23.94249 -23.29501 -23.02808 -22.31094 -21.85628 -18.75942 -18.28025 -18.18819 -17.54786 -17.44093 -17.07201 -16.70088 -16.20330 -16.10575 -15.66659 -15.47434 -15.31862 -14.69701 -14.48691 -14.16906 -14.10342 -13.67267 -13.61584 -13.40851 -13.36119 -13.35874 -12.77847 -12.51490 -12.41678 -12.23297 -12.03961 -11.96188 -11.72130 -11.51435 -11.32041 -11.21904 -11.12446 -10.84444 -10.76344 -10.59087 -10.45423 -10.12634 -9.91546 -9.46061 -8.54246 -8.41536 -7.99587 -6.15480 -4.19982 0.58496 0.89566 1.03831 2.15646 2.41306 3.08016 3.21885 3.27726 3.34819 3.39736 3.51801 4.13859 4.14559 4.33554 4.39062 4.41694 4.47287 4.56187 4.58678 4.67832 4.87655 5.07095 5.19077 5.26676 5.34454 5.43505 5.52076 5.69651 5.87129 6.01077 6.16414 6.26696 6.35665 6.72065 7.02715 7.19380 7.34992 7.37018 7.81001 8.06654 8.81857 9.45902 10.93231 Molecular weight = 363.07amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.005117 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.366361 B = 5470.691723 C = 6193.690081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.246 3.754 10 N -0.980 5.980 11 C 0.086 3.914 12 C 0.423 3.577 13 F -0.175 7.175 14 F -0.189 7.189 15 F -0.186 7.186 16 S 2.719 3.281 17 O -0.938 6.938 18 O -0.974 6.974 19 C -0.828 4.828 20 C 0.178 3.822 21 N -0.323 5.323 22 N -0.265 5.265 23 C 0.106 3.894 24 C -0.159 4.159 25 C -0.061 4.061 26 C -0.125 4.125 27 C 0.214 3.786 28 H 0.265 0.735 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.202 0.798 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 -13.043 0.403 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.125 3.875 10 N -0.816 5.816 11 C -0.044 4.044 12 C 0.367 3.633 13 F -0.156 7.156 14 F -0.171 7.171 15 F -0.167 7.167 16 S 2.806 3.194 17 O -0.928 6.928 18 O -0.964 6.964 19 C -0.925 4.925 20 C -0.004 4.004 21 N -0.144 5.144 22 N -0.028 5.028 23 C -0.021 4.021 24 C -0.181 4.181 25 C -0.084 4.084 26 C -0.144 4.144 27 C 0.091 3.909 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.152 0.848 32 H 0.142 0.858 33 H 0.219 0.781 34 H 0.187 0.813 35 H 0.176 0.824 36 H 0.169 0.831 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.621 -14.008 1.081 14.509 hybrid contribution -0.168 0.979 -0.517 1.120 sum -3.788 -13.029 0.563 13.580 Atomic orbital electron populations 1.69903 1.05987 1.27286 1.49860 1.24897 0.94905 0.99257 0.94633 0.86500 0.80046 0.82847 0.78120 1.20572 1.21056 1.19600 1.21434 0.93753 0.90320 1.51918 0.91768 1.19432 0.87056 0.81659 0.99366 1.57654 1.59622 1.45522 1.18768 1.22369 0.94436 0.97972 0.89596 1.21835 0.82328 0.82229 0.76957 1.93196 1.46034 1.82236 1.94167 1.93145 1.85185 1.90582 1.48175 1.93211 1.95679 1.57677 1.70177 1.01181 0.73043 0.72125 0.73023 1.93599 1.83864 1.61750 1.53631 1.93484 1.34464 1.82235 1.86267 1.31683 1.05944 1.17865 1.37047 1.23356 0.98493 0.89166 0.89348 1.77851 0.89628 1.15400 1.31514 1.46643 1.06586 1.06025 1.43551 1.21593 0.79105 1.01871 0.99502 1.20990 1.00100 0.92215 1.04782 1.21356 0.96126 0.96682 0.94257 1.21313 0.92028 0.99946 1.01160 1.19011 0.92595 0.85240 0.94018 0.92556 0.93452 0.93507 0.84805 0.85797 0.78114 0.81274 0.82373 0.83084 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.26 13.29 55.43 0.74 -23.52 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -13.83 9.37 -34.44 -0.32 -14.16 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.25 5.63 4.97 -5.19 -0.03 5.61 16 10 N -0.98 -19.15 2.67 -115.66 -0.31 -19.46 16 11 C 0.09 1.40 5.70 -4.05 -0.02 1.38 16 12 C 0.42 6.79 3.29 37.16 0.12 6.92 16 13 F -0.17 -3.12 15.69 2.25 0.04 -3.08 16 14 F -0.19 -2.82 17.32 2.25 0.04 -2.78 16 15 F -0.19 -3.06 14.05 2.25 0.03 -3.03 16 16 S 2.72 53.41 5.72 -107.50 -0.62 52.80 16 17 O -0.94 -21.43 16.77 -57.17 -0.96 -22.39 16 18 O -0.97 -19.17 16.45 -57.17 -0.94 -20.11 16 19 C -0.83 -14.49 4.38 -39.21 -0.17 -14.66 16 20 C 0.18 2.81 10.56 -17.59 -0.19 2.62 16 21 N -0.32 -5.14 12.66 30.46 0.39 -4.75 16 22 N -0.27 -4.00 3.90 -10.71 -0.04 -4.04 16 23 C 0.11 1.15 11.19 -16.63 -0.19 0.97 16 24 C -0.16 -1.46 9.98 -39.91 -0.40 -1.86 16 25 C -0.06 -0.70 10.07 -39.52 -0.40 -1.10 16 26 C -0.13 -1.95 10.10 -39.40 -0.40 -2.35 16 27 C 0.21 3.58 6.78 -84.27 -0.57 3.01 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.05 1.11 6.71 -51.93 -0.35 0.77 16 30 H 0.05 1.12 5.13 -51.93 -0.27 0.85 16 31 H 0.13 2.03 8.11 -51.93 -0.42 1.61 16 32 H 0.12 1.74 6.99 -51.93 -0.36 1.38 16 33 H 0.20 2.57 8.06 -52.49 -0.42 2.14 16 34 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.17 2.89 5.79 -52.48 -0.30 2.59 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -33.11 342.32 -7.09 -40.21 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -2.94 Total: 1.36 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -2.66 Total: -11.97 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.77 Total: -51.78 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.90 Total: -42.50 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 0.11 Total: -8.90 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 53.41 SS G_CDS: -0.62 Total: 52.80 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.11 -7.09 -40.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952882799.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.039 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds