Wall clock time and date at job start Tue Mar 31 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86790 * 120.00252 * 2 1 4 4 H 1.48501 * 109.47478 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47260 * 299.99634 * 3 2 1 6 6 H 1.48502 * 109.47395 * 59.99458 * 3 2 1 7 7 C 1.39901 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99933 * 175.56400 * 7 2 1 9 9 C 1.41151 * 120.00424 * 355.56036 * 7 2 1 10 10 C 1.40868 * 120.16698 * 214.78156 * 9 7 2 11 11 C 1.36372 * 119.83089 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.16803 * 0.02562 * 11 10 9 13 13 N 1.39233 * 119.83763 * 179.97438 * 12 11 10 14 14 C 1.34775 * 120.00562 * 144.77379 * 13 12 11 15 15 O 1.21279 * 119.99702 * 4.02871 * 14 13 12 16 16 C 1.50701 * 120.00330 * 184.03078 * 14 13 12 17 17 O 1.42903 * 109.47181 * 179.97438 * 16 14 13 18 18 C 1.35950 * 116.99853 * 180.02562 * 17 16 14 19 19 C 1.38692 * 120.04637 * 359.72633 * 18 17 16 20 20 C 1.38149 * 119.97000 * 179.67848 * 19 18 17 21 21 C 1.38385 * 120.06097 * 0.61698 * 20 19 18 22 22 Cl 1.73598 * 119.95227 * 179.70085 * 21 20 19 23 23 C 1.38341 * 120.09170 * 359.68125 * 21 20 19 24 24 C 1.38257 * 120.03304 * 359.97438 * 23 21 20 25 25 Cl 1.73598 * 120.03588 * 179.97438 * 24 23 21 26 26 C 1.39481 * 120.33280 * 0.25055 * 12 11 10 27 27 C 1.36376 * 120.16685 * 359.45120 * 26 12 11 28 28 H 0.97000 * 119.99986 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.08339 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.91905 * 179.97438 * 11 10 9 31 31 H 0.97006 * 119.99779 * 324.49384 * 13 12 11 32 32 H 1.08993 * 109.47381 * 300.00030 * 16 14 13 33 33 H 1.09008 * 109.46701 * 60.00141 * 16 14 13 34 34 H 1.08004 * 120.01948 * 359.97438 * 19 18 17 35 35 H 1.07997 * 119.97224 * 180.32634 * 20 19 18 36 36 H 1.08002 * 119.98732 * 180.02562 * 23 21 20 37 37 H 1.07999 * 119.91659 * 179.72148 * 26 12 11 38 38 H 1.08001 * 120.08766 * 180.25691 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8841 2.3963 -1.2126 6 1 1.8840 2.3964 1.2124 7 6 2.0081 -1.2116 0.0005 8 1 3.0858 -1.2131 -0.0718 9 6 1.3056 -2.4322 0.0957 10 6 1.8648 -3.5180 0.7976 11 6 1.1802 -4.6942 0.8848 12 6 -0.0703 -4.8239 0.2808 13 7 -0.7630 -6.0281 0.3737 14 6 -2.1071 -6.0266 0.4721 15 8 -2.7188 -4.9814 0.4063 16 6 -2.8501 -7.3236 0.6640 17 8 -4.2530 -7.0623 0.7398 18 6 -5.0718 -8.1335 0.9139 19 6 -4.5362 -9.4096 1.0040 20 6 -5.3692 -10.4963 1.1876 21 6 -6.7386 -10.3141 1.2689 22 17 -7.7833 -11.6825 1.4919 23 6 -7.2761 -9.0430 1.1732 24 6 -6.4455 -7.9520 0.9965 25 17 -7.1199 -6.3570 0.8757 26 6 -0.6279 -3.7551 -0.4208 27 6 0.0420 -2.5707 -0.5114 28 1 -0.4850 0.8400 -0.0004 29 1 2.8332 -3.4192 1.2655 30 1 1.6078 -5.5277 1.4222 31 1 -0.2784 -6.8684 0.3635 32 1 -2.6485 -7.9858 -0.1779 33 1 -2.5190 -7.7988 1.5874 34 1 -3.4679 -9.5533 0.9355 35 1 -4.9517 -11.4895 1.2631 36 1 -8.3450 -8.9027 1.2372 37 1 -1.5947 -3.8643 -0.8897 38 1 -0.3928 -1.7426 -1.0514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000037216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:46 Heat of formation + Delta-G solvation = -31.104086 kcal Electronic energy + Delta-G solvation = -25765.244955 eV Core-core repulsion = 21624.848930 eV Total energy + Delta-G solvation = -4140.396025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.037 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.81523 -39.65382 -38.15019 -37.18786 -36.85138 -36.36630 -34.52349 -33.00313 -31.51338 -30.65677 -29.62675 -29.34450 -28.00494 -24.91846 -23.48975 -22.84808 -21.56957 -21.03741 -19.74779 -18.90487 -17.57625 -17.32291 -17.11607 -16.62953 -16.37183 -16.07914 -15.21491 -15.15512 -14.65303 -14.51797 -14.29234 -13.99518 -13.76748 -13.24396 -13.04592 -12.89443 -12.70619 -12.58107 -12.13737 -11.94288 -11.86753 -11.65094 -11.52134 -11.35368 -11.20076 -11.08207 -11.04177 -10.93340 -10.55021 -9.99849 -9.91547 -9.55231 -9.44777 -9.07953 -8.82509 -8.55402 -7.57484 -6.96285 -6.62803 -4.37366 0.55014 0.63284 1.53459 1.98045 2.37759 2.48778 2.92224 2.96914 3.04353 3.09303 3.13992 3.25536 3.69591 3.96587 4.19641 4.26382 4.50547 4.65749 4.67769 4.79365 4.81385 4.87635 5.09717 5.21317 5.52642 5.60683 5.61515 5.88599 6.06863 6.32697 6.66968 6.75374 6.92459 6.99941 7.15318 7.23882 7.57807 7.60728 7.89447 8.05420 8.08757 8.28244 8.58692 8.64861 8.89739 8.95938 10.27967 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.001718 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.241179 B =16293.044770 C =17402.263162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.068 3.932 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.461 4.461 8 H 0.077 0.923 9 C 0.101 3.899 10 C -0.204 4.204 11 C -0.110 4.110 12 C 0.000 4.000 13 N -0.647 5.647 14 C 0.498 3.502 15 O -0.498 6.498 16 C 0.039 3.961 17 O -0.269 6.269 18 C 0.150 3.850 19 C -0.190 4.190 20 C -0.063 4.063 21 C -0.067 4.067 22 Cl -0.062 7.062 23 C -0.063 4.063 24 C -0.060 4.060 25 Cl -0.034 7.034 26 C -0.092 4.092 27 C -0.144 4.144 28 H 0.279 0.721 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.396 0.604 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.107 0.893 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.060 -21.642 1.935 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.148 4.148 3 Si 0.741 3.259 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.098 3.902 10 C -0.224 4.224 11 C -0.130 4.130 12 C -0.091 4.091 13 N -0.292 5.292 14 C 0.282 3.718 15 O -0.371 6.371 16 C -0.039 4.039 17 O -0.180 6.180 18 C 0.102 3.898 19 C -0.209 4.209 20 C -0.082 4.082 21 C -0.094 4.094 22 Cl -0.034 7.034 23 C -0.082 4.082 24 C -0.088 4.088 25 Cl -0.005 7.005 26 C -0.112 4.112 27 C -0.164 4.164 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.229 0.771 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.168 0.832 37 H 0.125 0.875 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.927 -20.467 1.893 23.765 hybrid contribution 0.556 0.082 0.216 0.602 sum -11.371 -20.386 2.109 23.438 Atomic orbital electron populations 1.69793 1.07276 1.28799 1.37297 1.25916 0.94948 1.01269 0.92625 0.86143 0.80496 0.80845 0.78462 1.18582 1.19948 1.19969 1.19534 0.94735 0.90206 1.44713 0.90504 1.17757 0.92218 0.91906 0.88279 1.20687 1.01186 0.94602 1.05948 1.20056 0.94834 0.97546 1.00559 1.17205 0.95130 0.86826 1.09965 1.42740 1.05230 1.08749 1.72465 1.19820 0.83000 0.89761 0.79229 1.90797 1.66931 1.32336 1.47050 1.22645 0.79818 0.97890 1.03595 1.86320 1.16433 1.29272 1.85969 1.18837 0.89316 0.87006 0.94617 1.21219 1.01281 0.90657 1.07781 1.20929 0.90928 0.99778 0.96534 1.20583 0.91435 0.88473 1.08936 1.98380 1.66532 1.42749 1.95691 1.20764 1.00598 0.88924 0.97962 1.20038 0.90033 0.88631 1.10061 1.98424 1.84580 1.21125 1.96390 1.20646 0.98997 0.93311 0.98238 1.21313 0.97007 0.96031 1.02090 0.91022 0.88438 0.89060 0.77089 0.88849 0.88756 0.83413 0.83934 0.83225 0.87484 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.40 10.60 55.55 0.59 -20.81 16 2 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 3 Si 0.92 18.98 29.56 -169.99 -5.03 13.95 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.46 -12.16 9.02 -37.85 -0.34 -12.50 16 8 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.07 16 10 C -0.20 -4.80 9.74 -39.26 -0.38 -5.18 16 11 C -0.11 -2.29 9.90 -39.79 -0.39 -2.69 16 12 C 0.00 0.01 6.30 -83.57 -0.53 -0.52 16 13 N -0.65 -10.29 5.30 -9.74 -0.05 -10.34 16 14 C 0.50 8.21 7.73 -10.99 -0.08 8.13 16 15 O -0.50 -11.01 13.94 -14.35 -0.20 -11.21 16 16 C 0.04 0.42 5.22 36.01 0.19 0.61 16 17 O -0.27 -3.64 9.13 -39.49 -0.36 -4.00 16 18 C 0.15 1.64 6.68 -39.20 -0.26 1.38 16 19 C -0.19 -1.47 9.04 -39.45 -0.36 -1.83 16 20 C -0.06 -0.44 9.82 -39.56 -0.39 -0.83 16 21 C -0.07 -0.54 6.32 -39.49 -0.25 -0.79 16 22 Cl -0.06 -0.46 28.95 -51.86 -1.50 -1.96 16 23 C -0.06 -0.56 9.61 -39.54 -0.38 -0.94 16 24 C -0.06 -0.66 6.33 -39.36 -0.25 -0.91 16 25 Cl -0.03 -0.43 28.50 -51.86 -1.48 -1.91 16 26 C -0.09 -2.25 8.61 -39.79 -0.34 -2.59 16 27 C -0.14 -3.83 8.62 -39.26 -0.34 -4.17 16 28 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 29 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 30 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.40 4.41 8.82 -40.82 -0.36 4.05 16 32 H 0.09 0.69 7.65 -51.93 -0.40 0.29 16 33 H 0.09 0.72 7.67 -51.92 -0.40 0.32 16 34 H 0.15 0.74 6.30 -52.48 -0.33 0.41 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.11 2.65 6.25 -52.49 -0.33 2.32 16 38 H 0.13 3.65 6.13 -52.49 -0.32 3.33 16 LS Contribution 362.41 15.07 5.46 5.46 Total: -1.00 -32.07 362.41 -10.73 -42.80 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.37 Total: 7.11 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -4.79 Total: -19.10 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.54 Total: -31.16 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.56 Total: -15.21 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -2.98 Total: -3.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.07 -10.73 -42.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.700 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds