Wall clock time and date at job start Tue Mar 31 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86790 * 120.00252 * 2 1 4 4 H 1.48501 * 109.47478 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47260 * 299.99634 * 3 2 1 6 6 H 1.48502 * 109.47395 * 59.99458 * 3 2 1 7 7 C 1.39901 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99933 * 175.56400 * 7 2 1 9 9 C 1.41151 * 120.00424 * 355.56036 * 7 2 1 10 10 C 1.40868 * 120.16698 * 214.78156 * 9 7 2 11 11 C 1.36372 * 119.83089 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.16803 * 0.02562 * 11 10 9 13 13 N 1.39233 * 119.83763 * 179.97438 * 12 11 10 14 14 C 1.34775 * 120.00562 * 144.77379 * 13 12 11 15 15 O 1.21279 * 119.99702 * 4.02871 * 14 13 12 16 16 C 1.50701 * 120.00330 * 184.03078 * 14 13 12 17 17 O 1.42903 * 109.47181 * 179.97438 * 16 14 13 18 18 C 1.35950 * 116.99853 * 180.02562 * 17 16 14 19 19 C 1.38692 * 120.04637 * 359.72633 * 18 17 16 20 20 C 1.38149 * 119.97000 * 179.67848 * 19 18 17 21 21 C 1.38385 * 120.06097 * 0.61698 * 20 19 18 22 22 Cl 1.73598 * 119.95227 * 179.70085 * 21 20 19 23 23 C 1.38341 * 120.09170 * 359.68125 * 21 20 19 24 24 C 1.38257 * 120.03304 * 359.97438 * 23 21 20 25 25 Cl 1.73598 * 120.03588 * 179.97438 * 24 23 21 26 26 C 1.39481 * 120.33280 * 0.25055 * 12 11 10 27 27 C 1.36376 * 120.16685 * 359.45120 * 26 12 11 28 28 H 0.97000 * 119.99986 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.08339 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.91905 * 179.97438 * 11 10 9 31 31 H 0.97006 * 119.99779 * 324.49384 * 13 12 11 32 32 H 1.08993 * 109.47381 * 300.00030 * 16 14 13 33 33 H 1.09008 * 109.46701 * 60.00141 * 16 14 13 34 34 H 1.08004 * 120.01948 * 359.97438 * 19 18 17 35 35 H 1.07997 * 119.97224 * 180.32634 * 20 19 18 36 36 H 1.08002 * 119.98732 * 180.02562 * 23 21 20 37 37 H 1.07999 * 119.91659 * 179.72148 * 26 12 11 38 38 H 1.08001 * 120.08766 * 180.25691 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8841 2.3963 -1.2126 6 1 1.8840 2.3964 1.2124 7 6 2.0081 -1.2116 0.0005 8 1 3.0858 -1.2131 -0.0718 9 6 1.3056 -2.4322 0.0957 10 6 1.8648 -3.5180 0.7976 11 6 1.1802 -4.6942 0.8848 12 6 -0.0703 -4.8239 0.2808 13 7 -0.7630 -6.0281 0.3737 14 6 -2.1071 -6.0266 0.4721 15 8 -2.7188 -4.9814 0.4063 16 6 -2.8501 -7.3236 0.6640 17 8 -4.2530 -7.0623 0.7398 18 6 -5.0718 -8.1335 0.9139 19 6 -4.5362 -9.4096 1.0040 20 6 -5.3692 -10.4963 1.1876 21 6 -6.7386 -10.3141 1.2689 22 17 -7.7833 -11.6825 1.4919 23 6 -7.2761 -9.0430 1.1732 24 6 -6.4455 -7.9520 0.9965 25 17 -7.1199 -6.3570 0.8757 26 6 -0.6279 -3.7551 -0.4208 27 6 0.0420 -2.5707 -0.5114 28 1 -0.4850 0.8400 -0.0004 29 1 2.8332 -3.4192 1.2655 30 1 1.6078 -5.5277 1.4222 31 1 -0.2784 -6.8684 0.3635 32 1 -2.6485 -7.9858 -0.1779 33 1 -2.5190 -7.7988 1.5874 34 1 -3.4679 -9.5533 0.9355 35 1 -4.9517 -11.4895 1.2631 36 1 -8.3450 -8.9027 1.2372 37 1 -1.5947 -3.8643 -0.8897 38 1 -0.3928 -1.7426 -1.0514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000037216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:45 Heat of formation + Delta-G solvation = -49.136614 kcal Electronic energy + Delta-G solvation = -25766.026904 eV Core-core repulsion = 21624.848930 eV Total energy + Delta-G solvation = -4141.177974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.037 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.71019 -40.91966 -39.25367 -38.56709 -37.65553 -37.07131 -36.18862 -34.74336 -32.17775 -31.70547 -31.32760 -30.78472 -29.18265 -26.61236 -24.27093 -23.65274 -23.22121 -22.67022 -21.22305 -19.66171 -19.24098 -18.80687 -17.89623 -17.55301 -17.51848 -17.22086 -16.90731 -15.89509 -15.83955 -15.73299 -15.42956 -15.17502 -14.94222 -14.55263 -14.43798 -14.07168 -13.91048 -13.65311 -13.53564 -13.34635 -13.33378 -12.89079 -12.68296 -12.61734 -12.50098 -12.32270 -11.96687 -11.92381 -11.78392 -11.69778 -11.66337 -11.22881 -10.79775 -10.49992 -10.10270 -9.45068 -9.26574 -8.76669 -8.50396 -6.33785 -0.08601 -0.02042 0.77737 0.86360 1.13586 1.23783 1.38307 1.41276 1.52409 1.54214 1.74162 2.22935 2.33226 2.62380 2.81579 3.51257 3.62539 3.68788 3.83716 3.94457 4.01528 4.11084 4.15577 4.45125 4.48355 4.52151 4.58850 4.94996 4.99256 5.01526 5.11939 5.15762 5.29607 5.34276 5.40962 5.71116 5.84868 6.04670 6.07992 6.14644 6.35629 6.66985 6.71386 6.95640 7.02049 7.36002 8.42447 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.001718 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.241179 B =16293.044770 C =17402.263162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.020 3.980 3 Si 0.991 3.009 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.064 3.936 10 C -0.209 4.209 11 C -0.102 4.102 12 C 0.021 3.979 13 N -0.633 5.633 14 C 0.493 3.507 15 O -0.564 6.564 16 C 0.048 3.952 17 O -0.308 6.308 18 C 0.131 3.869 19 C -0.177 4.177 20 C -0.054 4.054 21 C -0.070 4.070 22 Cl -0.056 7.056 23 C -0.066 4.066 24 C -0.081 4.081 25 Cl -0.064 7.064 26 C -0.110 4.110 27 C -0.171 4.171 28 H 0.281 0.719 29 H 0.114 0.886 30 H 0.143 0.857 31 H 0.425 0.575 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.185 0.815 35 H 0.174 0.826 36 H 0.157 0.843 37 H 0.093 0.907 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.551 -25.606 3.031 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.191 4.191 3 Si 0.812 3.188 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.525 4.525 8 H 0.099 0.901 9 C 0.062 3.938 10 C -0.229 4.229 11 C -0.122 4.122 12 C -0.073 4.073 13 N -0.281 5.281 14 C 0.281 3.719 15 O -0.441 6.441 16 C -0.030 4.030 17 O -0.220 6.220 18 C 0.084 3.916 19 C -0.196 4.196 20 C -0.073 4.073 21 C -0.097 4.097 22 Cl -0.027 7.027 23 C -0.085 4.085 24 C -0.109 4.109 25 Cl -0.036 7.036 26 C -0.130 4.130 27 C -0.191 4.191 28 H 0.092 0.908 29 H 0.132 0.868 30 H 0.161 0.839 31 H 0.264 0.736 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.202 0.798 35 H 0.192 0.808 36 H 0.174 0.826 37 H 0.112 0.888 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.402 -24.519 2.990 26.802 hybrid contribution -0.032 1.008 -0.104 1.014 sum -10.434 -23.511 2.886 25.884 Atomic orbital electron populations 1.69926 1.08985 1.29720 1.38982 1.26869 0.95671 1.04836 0.91719 0.85025 0.79354 0.75950 0.78510 1.17501 1.19378 1.19572 1.19811 0.95045 0.91132 1.46561 0.90091 1.18095 0.92580 0.93411 0.89717 1.20976 1.01962 0.94715 1.05202 1.20462 0.94049 0.98109 0.99596 1.17266 0.95174 0.87753 1.07091 1.42587 1.05454 1.08162 1.71912 1.20933 0.82834 0.91272 0.76888 1.90791 1.68230 1.35460 1.49630 1.22740 0.78413 0.94296 1.07511 1.86257 1.17682 1.31245 1.86846 1.19048 0.88833 0.87666 0.96056 1.21577 1.03083 0.88988 1.05937 1.21320 0.90231 1.01060 0.94662 1.20745 0.92281 0.88204 1.08470 1.98388 1.66559 1.42150 1.95615 1.20850 1.00916 0.88943 0.97833 1.20261 0.90796 0.87766 1.12071 1.98407 1.85029 1.23434 1.96683 1.20665 0.98617 0.94192 0.99504 1.21165 0.98100 0.96283 1.03554 0.90830 0.86772 0.83924 0.73599 0.84408 0.84477 0.79834 0.80849 0.82555 0.88846 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.86 10.60 21.82 0.23 -47.63 16 2 C 0.02 1.06 5.42 85.24 0.46 1.53 16 3 Si 0.99 40.04 29.56 68.60 2.03 42.07 16 4 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.49 -27.06 9.02 23.39 0.21 -26.85 16 8 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 9 C 0.06 3.52 5.55 -21.28 -0.12 3.40 16 10 C -0.21 -9.65 9.74 22.48 0.22 -9.43 16 11 C -0.10 -3.99 9.90 22.13 0.22 -3.77 16 12 C 0.02 0.84 6.30 38.57 0.24 1.09 16 13 N -0.63 -18.19 5.30 -303.12 -1.61 -19.80 16 14 C 0.49 15.34 7.73 87.66 0.68 16.02 16 15 O -0.56 -25.48 13.94 16.01 0.22 -25.26 16 16 C 0.05 0.84 5.22 71.24 0.37 1.21 16 17 O -0.31 -7.80 9.13 -73.95 -0.68 -8.48 16 18 C 0.13 2.57 6.68 22.51 0.15 2.72 16 19 C -0.18 -1.93 9.04 22.36 0.20 -1.73 16 20 C -0.05 -0.53 9.82 22.28 0.22 -0.31 16 21 C -0.07 -0.93 6.32 22.33 0.14 -0.79 16 22 Cl -0.06 -0.69 28.95 -2.72 -0.08 -0.77 16 23 C -0.07 -1.09 9.61 22.30 0.21 -0.88 16 24 C -0.08 -1.74 6.33 22.41 0.14 -1.60 16 25 Cl -0.06 -1.69 28.50 -2.72 -0.08 -1.77 16 26 C -0.11 -5.56 8.61 22.13 0.19 -5.37 16 27 C -0.17 -9.62 8.62 22.48 0.19 -9.43 16 28 H 0.28 14.58 8.30 -92.71 -0.77 13.81 16 29 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 30 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 31 H 0.43 7.24 8.82 -92.70 -0.82 6.42 16 32 H 0.14 1.21 7.65 -2.39 -0.02 1.20 16 33 H 0.14 1.26 7.67 -2.38 -0.02 1.24 16 34 H 0.18 0.58 6.30 -2.91 -0.02 0.56 16 35 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 36 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.09 4.92 6.25 -2.91 -0.02 4.90 16 38 H 0.10 6.21 6.13 -2.91 -0.02 6.19 16 Total: -1.00 -78.48 362.41 4.11 -74.37 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.33 Total: 21.46 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 3.74 Total: -34.21 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -1.38 Total: -67.43 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.45 Total: -33.74 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.16 Total: -2.53 kcal Total: -78.48 4.11 -74.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.236 kcal (2) G-P(sol) polarization free energy of solvation -78.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds