Wall clock time and date at job start Tue Mar 31 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86798 * 119.99868 * 2 1 4 4 H 1.48503 * 109.47182 * 269.99841 * 3 2 1 5 5 H 1.48503 * 109.47283 * 29.99636 * 3 2 1 6 6 H 1.48504 * 109.47418 * 149.99689 * 3 2 1 7 7 C 1.39902 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00548 * 175.56099 * 7 2 1 9 9 C 1.41159 * 119.99807 * 355.56127 * 7 2 1 10 10 C 1.40868 * 120.16456 * 214.77953 * 9 7 2 11 11 C 1.36374 * 119.82504 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.17388 * 0.02562 * 11 10 9 13 13 N 1.39233 * 119.83763 * 179.97438 * 12 11 10 14 14 C 1.34770 * 120.00258 * 144.76827 * 13 12 11 15 15 O 1.21288 * 119.99878 * 4.03633 * 14 13 12 16 16 C 1.50701 * 120.00061 * 184.03066 * 14 13 12 17 17 O 1.42907 * 109.46852 * 180.02562 * 16 14 13 18 18 C 1.35928 * 116.99468 * 180.02562 * 17 16 14 19 19 C 1.38720 * 120.05764 * 0.02562 * 18 17 16 20 20 C 1.38153 * 119.98552 * 179.97438 * 19 18 17 21 21 C 1.38268 * 120.08324 * 359.97438 * 20 19 18 22 22 C 1.38358 * 120.10961 * 0.02834 * 21 20 19 23 23 Cl 1.73597 * 119.99188 * 179.97438 * 22 21 20 24 24 C 1.38369 * 120.01531 * 359.69614 * 22 21 20 25 25 Cl 1.73602 * 120.04438 * 180.28023 * 24 22 21 26 26 C 1.39480 * 120.32874 * 0.25032 * 12 11 10 27 27 C 1.36377 * 120.17046 * 359.44585 * 26 12 11 28 28 H 0.97000 * 120.00541 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.08551 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.91383 * 179.97438 * 11 10 9 31 31 H 0.97001 * 119.99896 * 324.49974 * 13 12 11 32 32 H 1.08993 * 109.47381 * 300.00605 * 16 14 13 33 33 H 1.08997 * 109.46986 * 60.01138 * 16 14 13 34 34 H 1.08006 * 120.00609 * 359.97438 * 19 18 17 35 35 H 1.07996 * 119.95717 * 180.02562 * 20 19 18 36 36 H 1.08002 * 119.94201 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.91742 * 179.72785 * 26 12 11 38 38 H 1.08001 * 120.08668 * 180.25136 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4400 2.6527 0.7000 6 1 3.5402 1.4403 0.7001 7 6 2.0083 -1.2115 0.0005 8 1 3.0858 -1.2130 -0.0718 9 6 1.3057 -2.4322 0.0957 10 6 1.8651 -3.5179 0.7976 11 6 1.1805 -4.6942 0.8847 12 6 -0.0700 -4.8240 0.2807 13 7 -0.7626 -6.0283 0.3736 14 6 -2.1067 -6.0268 0.4722 15 8 -2.7184 -4.9816 0.4064 16 6 -2.8495 -7.3239 0.6641 17 8 -4.2525 -7.0627 0.7389 18 6 -5.0711 -8.1338 0.9129 19 6 -4.5349 -9.4095 1.0101 20 6 -5.3683 -10.4971 1.1875 21 6 -6.7366 -10.3158 1.2688 22 6 -7.2753 -9.0450 1.1722 23 17 -8.9938 -8.8210 1.2740 24 6 -6.4443 -7.9521 1.0002 25 17 -7.1189 -6.3566 0.8862 26 6 -0.6277 -3.7552 -0.4208 27 6 0.0421 -2.5707 -0.5113 28 1 -0.4851 0.8400 -0.0004 29 1 2.8337 -3.4194 1.2647 30 1 1.6082 -5.5277 1.4221 31 1 -0.2779 -6.8685 0.3635 32 1 -2.6479 -7.9861 -0.1778 33 1 -2.5184 -7.7990 1.5875 34 1 -3.4662 -9.5525 0.9472 35 1 -4.9503 -11.4900 1.2635 36 1 -7.3860 -11.1676 1.4070 37 1 -1.5945 -3.8644 -0.8896 38 1 -0.3928 -1.7427 -1.0514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000094661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:53 Heat of formation + Delta-G solvation = -29.621886 kcal Electronic energy + Delta-G solvation = -25880.632282 eV Core-core repulsion = 21740.300530 eV Total energy + Delta-G solvation = -4140.331752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.037 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.78958 -39.63824 -38.13471 -37.16581 -36.64852 -36.59122 -34.51581 -32.99705 -31.28139 -30.68227 -29.66772 -29.37563 -28.02848 -24.90092 -23.33950 -22.95140 -21.55445 -21.02248 -19.73395 -18.92869 -17.54518 -17.31567 -16.85014 -16.62304 -16.36020 -16.13791 -15.38874 -15.18017 -14.68981 -14.58735 -14.27025 -14.00124 -13.78837 -13.23185 -13.02376 -12.69789 -12.55110 -12.22640 -12.12484 -11.88816 -11.83897 -11.72053 -11.50330 -11.43571 -11.28466 -11.16834 -10.96207 -10.94409 -10.53586 -9.99562 -9.92796 -9.54035 -9.17637 -9.06424 -8.81913 -8.67065 -7.56796 -6.95705 -6.61971 -4.36681 0.48826 0.74383 1.45678 1.97910 2.41390 2.51915 2.93831 3.00859 3.05079 3.09614 3.12852 3.26831 3.72549 3.97034 4.27613 4.36072 4.49233 4.67494 4.70703 4.73546 4.82218 4.87722 4.90305 5.45321 5.53305 5.62112 5.75904 5.92438 6.07406 6.33417 6.68016 6.77414 6.93335 7.00589 7.15903 7.24531 7.58473 7.61399 7.90178 8.05786 8.09520 8.28934 8.59536 8.65409 8.90268 8.96594 10.28694 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.001831 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.715648 B =15284.724726 C =16583.116424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.068 3.932 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.204 4.204 11 C -0.110 4.110 12 C 0.000 4.000 13 N -0.647 5.647 14 C 0.498 3.502 15 O -0.497 6.497 16 C 0.041 3.959 17 O -0.269 6.269 18 C 0.156 3.844 19 C -0.199 4.199 20 C -0.062 4.062 21 C -0.142 4.142 22 C 0.006 3.994 23 Cl -0.043 7.043 24 C -0.069 4.069 25 Cl -0.027 7.027 26 C -0.092 4.092 27 C -0.145 4.145 28 H 0.279 0.721 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.396 0.604 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.107 0.893 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.045 -22.172 1.993 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.148 4.148 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.099 3.901 10 C -0.224 4.224 11 C -0.130 4.130 12 C -0.091 4.091 13 N -0.292 5.292 14 C 0.282 3.718 15 O -0.371 6.371 16 C -0.038 4.038 17 O -0.180 6.180 18 C 0.108 3.892 19 C -0.218 4.218 20 C -0.080 4.080 21 C -0.161 4.161 22 C -0.022 4.022 23 Cl -0.013 7.013 24 C -0.098 4.098 25 Cl 0.003 6.997 26 C -0.112 4.112 27 C -0.165 4.165 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.229 0.771 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.125 0.875 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.985 -20.847 1.945 24.125 hybrid contribution 0.520 0.240 0.192 0.604 sum -11.465 -20.607 2.137 23.678 Atomic orbital electron populations 1.69779 1.07274 1.28909 1.37188 1.25914 0.94949 1.01256 0.92637 0.86192 0.80156 0.80509 0.79078 1.19494 1.20264 1.18741 1.19492 0.94689 0.90212 1.44804 0.90565 1.17752 0.92217 0.91889 0.88276 1.20685 1.01184 0.94606 1.05972 1.20057 0.94839 0.97540 1.00559 1.17203 0.95130 0.86826 1.09967 1.42734 1.05221 1.08743 1.72483 1.19824 0.83001 0.89767 0.79235 1.90801 1.66923 1.32339 1.47022 1.22636 0.79732 0.97872 1.03580 1.86303 1.16416 1.29216 1.86096 1.18560 0.88683 0.87095 0.94861 1.21384 1.01540 0.91106 1.07745 1.20988 0.92275 0.99075 0.95676 1.20948 0.95794 0.95003 1.04350 1.20513 0.85666 0.93154 1.02856 1.98401 1.09229 1.97460 1.96246 1.19971 0.90232 0.88300 1.11250 1.98424 1.84460 1.20535 1.96322 1.20647 0.98992 0.93310 0.98232 1.21315 0.97013 0.96029 1.02098 0.90960 0.88444 0.89068 0.77097 0.88866 0.88765 0.83795 0.84015 0.83919 0.87489 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.48 10.60 55.55 0.59 -20.89 16 2 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 3 Si 0.92 19.04 29.56 -169.99 -5.03 14.01 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.19 9.02 -37.85 -0.34 -12.53 16 8 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 9 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 10 C -0.20 -4.82 9.74 -39.26 -0.38 -5.20 16 11 C -0.11 -2.30 9.90 -39.79 -0.39 -2.69 16 12 C 0.00 0.01 6.30 -83.57 -0.53 -0.52 16 13 N -0.65 -10.36 5.30 -9.74 -0.05 -10.42 16 14 C 0.50 8.30 7.73 -10.99 -0.08 8.21 16 15 O -0.50 -11.12 13.94 -14.36 -0.20 -11.32 16 16 C 0.04 0.45 5.22 36.01 0.19 0.63 16 17 O -0.27 -3.75 9.13 -39.42 -0.36 -4.11 16 18 C 0.16 1.78 6.68 -39.20 -0.26 1.52 16 19 C -0.20 -1.54 9.04 -39.43 -0.36 -1.89 16 20 C -0.06 -0.38 10.04 -39.60 -0.40 -0.78 16 21 C -0.14 -1.03 9.83 -39.53 -0.39 -1.41 16 22 C 0.01 0.06 6.32 -39.49 -0.25 -0.19 16 23 Cl -0.04 -0.40 27.96 -51.86 -1.45 -1.85 16 24 C -0.07 -0.83 6.34 -39.33 -0.25 -1.08 16 25 Cl -0.03 -0.37 27.51 -51.86 -1.43 -1.79 16 26 C -0.09 -2.25 8.61 -39.79 -0.34 -2.60 16 27 C -0.14 -3.85 8.61 -39.26 -0.34 -4.19 16 28 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 29 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 30 H 0.09 1.58 8.06 -52.48 -0.42 1.15 16 31 H 0.40 4.44 8.82 -40.82 -0.36 4.08 16 32 H 0.09 0.70 7.66 -51.93 -0.40 0.30 16 33 H 0.09 0.74 7.66 -51.93 -0.40 0.34 16 34 H 0.14 0.73 6.30 -52.48 -0.33 0.40 16 35 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.11 2.66 6.25 -52.49 -0.33 2.33 16 38 H 0.13 3.67 6.13 -52.49 -0.32 3.35 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -32.65 360.87 -10.67 -43.32 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -3.37 Total: 6.59 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -4.81 Total: -18.98 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.54 Total: -31.30 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.56 Total: -15.43 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -2.88 Total: -3.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.65 -10.67 -43.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000094661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.698 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds