Wall clock time and date at job start Tue Mar 31 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86798 * 119.99868 * 2 1 4 4 H 1.48503 * 109.47182 * 269.99841 * 3 2 1 5 5 H 1.48503 * 109.47283 * 29.99636 * 3 2 1 6 6 H 1.48504 * 109.47418 * 149.99689 * 3 2 1 7 7 C 1.39902 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00548 * 175.56099 * 7 2 1 9 9 C 1.41159 * 119.99807 * 355.56127 * 7 2 1 10 10 C 1.40868 * 120.16456 * 214.77953 * 9 7 2 11 11 C 1.36374 * 119.82504 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.17388 * 0.02562 * 11 10 9 13 13 N 1.39233 * 119.83763 * 179.97438 * 12 11 10 14 14 C 1.34770 * 120.00258 * 144.76827 * 13 12 11 15 15 O 1.21288 * 119.99878 * 4.03633 * 14 13 12 16 16 C 1.50701 * 120.00061 * 184.03066 * 14 13 12 17 17 O 1.42907 * 109.46852 * 180.02562 * 16 14 13 18 18 C 1.35928 * 116.99468 * 180.02562 * 17 16 14 19 19 C 1.38720 * 120.05764 * 0.02562 * 18 17 16 20 20 C 1.38153 * 119.98552 * 179.97438 * 19 18 17 21 21 C 1.38268 * 120.08324 * 359.97438 * 20 19 18 22 22 C 1.38358 * 120.10961 * 0.02834 * 21 20 19 23 23 Cl 1.73597 * 119.99188 * 179.97438 * 22 21 20 24 24 C 1.38369 * 120.01531 * 359.69614 * 22 21 20 25 25 Cl 1.73602 * 120.04438 * 180.28023 * 24 22 21 26 26 C 1.39480 * 120.32874 * 0.25032 * 12 11 10 27 27 C 1.36377 * 120.17046 * 359.44585 * 26 12 11 28 28 H 0.97000 * 120.00541 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.08551 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.91383 * 179.97438 * 11 10 9 31 31 H 0.97001 * 119.99896 * 324.49974 * 13 12 11 32 32 H 1.08993 * 109.47381 * 300.00605 * 16 14 13 33 33 H 1.08997 * 109.46986 * 60.01138 * 16 14 13 34 34 H 1.08006 * 120.00609 * 359.97438 * 19 18 17 35 35 H 1.07996 * 119.95717 * 180.02562 * 20 19 18 36 36 H 1.08002 * 119.94201 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.91742 * 179.72785 * 26 12 11 38 38 H 1.08001 * 120.08668 * 180.25136 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4400 2.6527 0.7000 6 1 3.5402 1.4403 0.7001 7 6 2.0083 -1.2115 0.0005 8 1 3.0858 -1.2130 -0.0718 9 6 1.3057 -2.4322 0.0957 10 6 1.8651 -3.5179 0.7976 11 6 1.1805 -4.6942 0.8847 12 6 -0.0700 -4.8240 0.2807 13 7 -0.7626 -6.0283 0.3736 14 6 -2.1067 -6.0268 0.4722 15 8 -2.7184 -4.9816 0.4064 16 6 -2.8495 -7.3239 0.6641 17 8 -4.2525 -7.0627 0.7389 18 6 -5.0711 -8.1338 0.9129 19 6 -4.5349 -9.4095 1.0101 20 6 -5.3683 -10.4971 1.1875 21 6 -6.7366 -10.3158 1.2688 22 6 -7.2753 -9.0450 1.1722 23 17 -8.9938 -8.8210 1.2740 24 6 -6.4443 -7.9521 1.0002 25 17 -7.1189 -6.3566 0.8862 26 6 -0.6277 -3.7552 -0.4208 27 6 0.0421 -2.5707 -0.5113 28 1 -0.4851 0.8400 -0.0004 29 1 2.8337 -3.4194 1.2647 30 1 1.6082 -5.5277 1.4221 31 1 -0.2779 -6.8685 0.3635 32 1 -2.6479 -7.9861 -0.1778 33 1 -2.5184 -7.7990 1.5875 34 1 -3.4662 -9.5525 0.9472 35 1 -4.9503 -11.4900 1.2635 36 1 -7.3860 -11.1676 1.4070 37 1 -1.5945 -3.8644 -0.8896 38 1 -0.3928 -1.7427 -1.0514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000094661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:52 Heat of formation + Delta-G solvation = -48.644204 kcal Electronic energy + Delta-G solvation = -25881.457151 eV Core-core repulsion = 21740.300530 eV Total energy + Delta-G solvation = -4141.156621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.037 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.69784 -40.90566 -39.25150 -38.57758 -37.49684 -37.34923 -36.19376 -34.74801 -32.04611 -31.56783 -31.32583 -30.89675 -29.24167 -26.61186 -24.09882 -23.75650 -23.22403 -22.65507 -21.21940 -19.69126 -19.24081 -18.79713 -17.77829 -17.52563 -17.39886 -17.21453 -16.91638 -16.12753 -15.91302 -15.74036 -15.43994 -15.14462 -14.99386 -14.59840 -14.47161 -14.11768 -13.91982 -13.65154 -13.33561 -13.10384 -13.00170 -12.86771 -12.70570 -12.60058 -12.56136 -12.31461 -12.15639 -11.94234 -11.84188 -11.78508 -11.69841 -11.21746 -10.79662 -10.50535 -9.84918 -9.45463 -9.38787 -8.77113 -8.50400 -6.33955 -0.14357 0.10321 0.71254 0.78642 1.13256 1.21880 1.37945 1.41991 1.52713 1.54051 1.74407 2.22690 2.40856 2.64277 2.81521 3.54047 3.68787 3.74856 3.89995 3.92789 4.03378 4.10846 4.23822 4.28161 4.44875 4.48070 4.88154 4.98838 5.04034 5.11511 5.15429 5.21086 5.33167 5.40560 5.42267 5.70813 5.84949 6.05886 6.09175 6.14244 6.35337 6.66690 6.70970 6.95238 7.01831 7.35726 8.42147 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.001831 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.715648 B =15284.724726 C =16583.116424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.020 3.980 3 Si 0.991 3.009 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.494 4.494 8 H 0.081 0.919 9 C 0.065 3.935 10 C -0.209 4.209 11 C -0.102 4.102 12 C 0.020 3.980 13 N -0.633 5.633 14 C 0.493 3.507 15 O -0.564 6.564 16 C 0.050 3.950 17 O -0.311 6.311 18 C 0.133 3.867 19 C -0.188 4.188 20 C -0.047 4.047 21 C -0.135 4.135 22 C -0.008 4.008 23 Cl -0.050 7.050 24 C -0.098 4.098 25 Cl -0.063 7.063 26 C -0.110 4.110 27 C -0.171 4.171 28 H 0.281 0.719 29 H 0.115 0.885 30 H 0.144 0.856 31 H 0.425 0.575 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.180 0.820 35 H 0.187 0.813 36 H 0.169 0.831 37 H 0.092 0.908 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.280 -26.752 3.159 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.191 4.191 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.525 4.525 8 H 0.100 0.900 9 C 0.062 3.938 10 C -0.229 4.229 11 C -0.122 4.122 12 C -0.073 4.073 13 N -0.281 5.281 14 C 0.280 3.720 15 O -0.442 6.442 16 C -0.028 4.028 17 O -0.223 6.223 18 C 0.086 3.914 19 C -0.206 4.206 20 C -0.065 4.065 21 C -0.154 4.154 22 C -0.036 4.036 23 Cl -0.021 7.021 24 C -0.127 4.127 25 Cl -0.035 7.035 26 C -0.130 4.130 27 C -0.192 4.192 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.161 0.839 31 H 0.264 0.736 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.197 0.803 35 H 0.204 0.796 36 H 0.186 0.814 37 H 0.111 0.889 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.199 -25.515 3.111 27.654 hybrid contribution -0.116 1.342 -0.152 1.356 sum -10.316 -24.173 2.959 26.448 Atomic orbital electron populations 1.69919 1.09006 1.29782 1.38911 1.26880 0.95671 1.04872 0.91723 0.85070 0.78830 0.75582 0.79364 1.18706 1.19954 1.17693 1.19780 0.95049 0.91106 1.46592 0.90045 1.18093 0.92552 0.93417 0.89701 1.20977 1.01971 0.94704 1.05210 1.20465 0.94021 0.98120 0.99571 1.17264 0.95190 0.87744 1.07113 1.42577 1.05415 1.08170 1.71898 1.20951 0.82859 0.91282 0.76890 1.90795 1.68251 1.35503 1.49651 1.22725 0.78287 0.94251 1.07490 1.86234 1.17716 1.31353 1.87047 1.18801 0.88037 0.87948 0.96584 1.21823 1.03534 0.89490 1.05803 1.21535 0.91397 1.00587 0.92959 1.21392 0.97067 0.94384 1.02550 1.20735 0.85282 0.93753 1.03792 1.98395 1.09822 1.97581 1.96338 1.20282 0.91272 0.87213 1.13886 1.98400 1.85017 1.23339 1.96702 1.20661 0.98580 0.94226 0.99521 1.21168 0.98139 0.96266 1.03593 0.90837 0.86732 0.83878 0.73574 0.84416 0.84465 0.80258 0.79610 0.81385 0.88947 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.15 10.60 21.82 0.23 -47.92 16 2 C 0.02 1.04 5.42 85.24 0.46 1.51 16 3 Si 0.99 40.19 29.56 68.60 2.03 42.22 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 7 C -0.49 -27.12 9.02 23.39 0.21 -26.91 16 8 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 9 C 0.06 3.55 5.55 -21.27 -0.12 3.43 16 10 C -0.21 -9.69 9.74 22.48 0.22 -9.47 16 11 C -0.10 -4.00 9.90 22.13 0.22 -3.78 16 12 C 0.02 0.84 6.30 38.56 0.24 1.08 16 13 N -0.63 -18.39 5.30 -303.12 -1.61 -20.00 16 14 C 0.49 15.62 7.73 87.66 0.68 16.29 16 15 O -0.56 -25.98 13.94 15.98 0.22 -25.75 16 16 C 0.05 0.90 5.22 71.24 0.37 1.27 16 17 O -0.31 -8.24 9.13 -73.70 -0.67 -8.91 16 18 C 0.13 2.75 6.68 22.52 0.15 2.91 16 19 C -0.19 -1.95 9.04 22.36 0.20 -1.75 16 20 C -0.05 -0.32 10.04 22.26 0.22 -0.09 16 21 C -0.14 -1.45 9.83 22.31 0.22 -1.23 16 22 C -0.01 -0.15 6.32 22.33 0.14 0.00 16 23 Cl -0.05 -0.94 27.96 -2.72 -0.08 -1.02 16 24 C -0.10 -2.32 6.34 22.43 0.14 -2.18 16 25 Cl -0.06 -1.85 27.51 -2.72 -0.07 -1.93 16 26 C -0.11 -5.62 8.61 22.13 0.19 -5.43 16 27 C -0.17 -9.72 8.61 22.48 0.19 -9.53 16 28 H 0.28 14.72 8.30 -92.71 -0.77 13.95 16 29 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 30 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.43 7.33 8.82 -92.71 -0.82 6.51 16 32 H 0.14 1.28 7.66 -2.39 -0.02 1.26 16 33 H 0.14 1.32 7.66 -2.39 -0.02 1.30 16 34 H 0.18 0.50 6.30 -2.91 -0.02 0.48 16 35 H 0.19 -0.30 8.06 -2.91 -0.02 -0.32 16 36 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 37 H 0.09 4.92 6.25 -2.91 -0.02 4.91 16 38 H 0.10 6.23 6.13 -2.91 -0.02 6.21 16 Total: -1.00 -81.77 360.87 4.13 -77.65 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.33 Total: 19.56 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 3.75 Total: -33.89 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -1.38 Total: -67.92 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.45 Total: -34.67 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.15 Total: -2.95 kcal Total: -81.77 4.13 -77.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000094661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.001 kcal (2) G-P(sol) polarization free energy of solvation -81.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds