Wall clock time and date at job start Tue Mar 31 2020 07:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31025 * 1 3 3 Si 1.86802 * 119.99926 * 2 1 4 4 H 1.48509 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47320 * 299.99540 * 3 2 1 6 6 H 1.48497 * 109.47239 * 60.00043 * 3 2 1 7 7 C 1.39757 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00892 * 180.02562 * 7 2 1 9 9 C 1.40837 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.38871 * 126.89641 * 0.27730 * 9 7 2 11 11 N 1.35855 * 109.26996 * 180.15076 * 10 9 7 12 12 C 1.39477 * 124.73594 * 179.86341 * 11 10 9 13 13 N 1.32386 * 119.70809 * 130.51469 * 12 11 10 14 14 C 1.31872 * 121.65157 * 179.68700 * 13 12 11 15 15 C 1.38162 * 120.87422 * 0.58221 * 14 13 12 16 16 C 1.50704 * 120.33869 * 179.70339 * 15 14 13 17 17 F 1.39896 * 109.47146 * 269.72254 * 16 15 14 18 18 F 1.39898 * 109.47240 * 29.72185 * 16 15 14 19 19 F 1.39898 * 109.47133 * 149.72533 * 16 15 14 20 20 C 1.38779 * 119.32304 * 359.43169 * 15 14 13 21 21 C 1.38517 * 118.48102 * 0.27020 * 20 15 14 22 22 Cl 1.73595 * 120.45910 * 180.02562 * 21 20 15 23 23 C 1.38434 * 110.53228 * 359.60056 * 11 10 9 24 24 C 1.39058 * 132.78923 * 180.24213 * 23 11 10 25 25 C 1.37904 * 119.97267 * 179.97438 * 24 23 11 26 26 C 1.38644 * 120.60933 * 0.02562 * 25 24 23 27 27 C 1.37906 * 120.24272 * 359.97438 * 26 25 24 28 28 C 1.39167 * 119.69772 * 0.02562 * 27 26 25 29 29 H 0.97005 * 119.99979 * 0.02562 * 1 2 3 30 30 H 1.07999 * 125.36518 * 359.97438 * 10 9 7 31 31 H 1.07999 * 119.56462 * 180.28378 * 14 13 12 32 32 H 1.07994 * 120.76462 * 180.25726 * 20 15 14 33 33 H 1.08002 * 120.01354 * 359.97438 * 24 23 11 34 34 H 1.08007 * 119.69511 * 180.02562 * 25 24 23 35 35 H 1.08003 * 119.87960 * 179.97438 * 26 25 24 36 36 H 1.07998 * 120.15629 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.7043 1.3464 0.0006 5 1 1.8856 2.3965 -1.2125 6 1 1.8855 2.3965 1.2125 7 6 2.0091 -1.2103 0.0005 8 1 3.0891 -1.2104 0.0010 9 6 1.3049 -2.4300 0.0005 10 6 -0.0737 -2.5967 -0.0053 11 7 -0.3648 -3.9237 0.0002 12 6 -1.6547 -4.4544 -0.0006 13 7 -1.9750 -5.3990 -0.8711 14 6 -3.1809 -5.9317 -0.9017 15 6 -4.1642 -5.5111 -0.0270 16 6 -5.5403 -6.1237 -0.0769 17 9 -6.3457 -5.3900 -0.9544 18 9 -5.4463 -7.4456 -0.5251 19 9 -6.1062 -6.1040 1.2023 20 6 -3.8702 -4.5229 0.9019 21 6 -2.5931 -3.9865 0.9139 22 17 -2.1694 -2.7483 2.0544 23 6 0.7974 -4.6758 0.0008 24 6 1.0361 -6.0457 0.0012 25 6 2.3312 -6.5194 0.0013 26 6 3.4041 -5.6413 0.0015 27 6 3.1870 -4.2794 0.0011 28 6 1.8846 -3.7889 0.0010 29 1 -0.4850 0.8401 -0.0004 30 1 -0.8000 -1.7975 -0.0104 31 1 -3.4043 -6.7037 -1.6232 32 1 -4.6199 -4.1796 1.5993 33 1 0.2075 -6.7385 0.0015 34 1 2.5114 -7.5844 0.0011 35 1 4.4136 -6.0251 0.0019 36 1 4.0237 -3.5966 0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000167340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:29 Heat of formation + Delta-G solvation = -65.605138 kcal Electronic energy + Delta-G solvation = -29672.588694 eV Core-core repulsion = 24925.846789 eV Total energy + Delta-G solvation = -4746.741904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.044 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -51.23816 -48.74360 -48.69237 -42.39721 -40.96658 -37.85875 -37.58639 -35.86945 -34.38211 -33.27761 -32.07423 -30.37194 -29.56191 -27.93072 -26.23985 -25.28846 -23.90307 -23.17434 -22.05431 -21.51285 -19.76578 -19.64711 -19.55907 -19.09465 -18.35379 -17.88681 -17.24615 -16.54379 -16.32877 -16.06669 -15.87095 -15.70292 -15.47249 -15.43782 -15.13861 -14.94665 -14.83903 -14.80265 -14.63178 -14.52242 -14.41779 -14.33731 -13.48242 -13.32609 -13.13424 -12.98239 -12.97855 -12.57813 -12.48571 -12.19179 -12.02836 -11.65560 -11.48530 -11.43945 -11.22776 -10.96540 -10.35702 -10.09646 -8.83683 -8.55343 -8.44684 -6.05590 -0.81938 -0.31418 0.49149 0.84295 0.88653 1.36830 1.42501 1.47191 1.56062 1.82273 1.98045 2.28582 2.29683 2.56538 2.88528 3.00346 3.27230 3.31496 3.37322 3.42628 3.58756 3.89433 3.97523 4.18379 4.32584 4.37763 4.43747 4.59530 4.76252 4.82344 4.93696 5.17728 5.25801 5.34743 5.60903 5.78643 5.85821 5.88408 6.11440 6.30089 6.47308 6.69137 6.95351 7.08219 7.17372 8.51506 Molecular weight = 366.04amu Principal moments of inertia in cm(-1) A = 0.010925 B = 0.003557 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.252215 B = 7870.340876 C = 9711.046037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.017 3.983 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.441 4.441 8 H 0.073 0.927 9 C -0.004 4.004 10 C -0.115 4.115 11 N -0.426 5.426 12 C 0.383 3.617 13 N -0.506 5.506 14 C 0.188 3.812 15 C -0.257 4.257 16 C 0.537 3.463 17 F -0.174 7.174 18 F -0.168 7.168 19 F -0.173 7.173 20 C 0.013 3.987 21 C -0.124 4.124 22 Cl -0.027 7.027 23 C 0.081 3.919 24 C -0.139 4.139 25 C -0.105 4.105 26 C -0.156 4.156 27 C -0.085 4.085 28 C -0.139 4.139 29 H 0.281 0.719 30 H 0.187 0.813 31 H 0.209 0.791 32 H 0.185 0.815 33 H 0.117 0.883 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 -10.993 1.229 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.473 4.473 8 H 0.091 0.909 9 C -0.009 4.009 10 C -0.234 4.234 11 N -0.110 5.110 12 C 0.155 3.845 13 N -0.218 5.218 14 C 0.027 3.973 15 C -0.262 4.262 16 C 0.482 3.518 17 F -0.155 7.155 18 F -0.149 7.149 19 F -0.154 7.154 20 C -0.013 4.013 21 C -0.156 4.156 22 Cl 0.002 6.998 23 C -0.022 4.022 24 C -0.160 4.160 25 C -0.124 4.124 26 C -0.175 4.175 27 C -0.103 4.103 28 C -0.144 4.144 29 H 0.091 0.909 30 H 0.204 0.796 31 H 0.226 0.774 32 H 0.202 0.798 33 H 0.135 0.865 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.417 -10.961 0.755 13.840 hybrid contribution -0.589 1.432 0.613 1.665 sum -9.006 -9.529 1.368 13.182 Atomic orbital electron populations 1.69523 1.08348 1.29110 1.40110 1.26493 0.95658 1.03706 0.93382 0.85062 0.79115 0.76647 0.78344 1.18398 1.19663 1.19633 1.19043 0.94209 0.89936 1.44132 0.90863 1.18530 0.91273 0.90577 1.00477 1.23131 0.97670 0.80570 1.22058 1.40922 1.00424 1.06436 1.63228 1.18437 0.85500 0.90940 0.89598 1.67695 1.21727 1.12154 1.20251 1.23057 0.84986 0.94746 0.94480 1.20947 0.95750 1.04734 1.04784 1.17501 0.84334 0.76068 0.73899 1.93253 1.75477 1.77221 1.69555 1.93218 1.96306 1.36173 1.89192 1.93214 1.86582 1.96258 1.39331 1.21392 0.93793 0.90697 0.95461 1.21762 0.96479 1.00116 0.97256 1.98433 1.93273 1.50522 1.57566 1.18659 0.85127 0.93422 1.04994 1.20215 0.98351 0.90474 1.06948 1.21050 0.90573 1.00635 1.00101 1.21121 1.00029 0.91752 1.04584 1.20686 0.94198 0.96251 0.99188 1.19900 0.93539 0.94127 1.06823 0.90852 0.79621 0.77443 0.79805 0.86508 0.82772 0.83195 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.58 10.32 21.80 0.23 -43.36 16 2 C 0.02 0.85 5.49 85.18 0.47 1.32 16 3 Si 0.99 39.21 29.56 68.60 2.03 41.24 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.44 -23.85 9.42 23.27 0.22 -23.63 16 8 H 0.07 3.81 7.84 -2.91 -0.02 3.78 16 9 C 0.00 -0.19 6.10 -19.98 -0.12 -0.31 16 10 C -0.12 -6.04 8.36 84.22 0.70 -5.33 16 11 N -0.43 -19.95 2.75 -341.48 -0.94 -20.89 16 12 C 0.38 15.17 6.72 132.90 0.89 16.06 16 13 N -0.51 -17.47 9.96 -192.86 -1.92 -19.39 16 14 C 0.19 4.68 10.56 84.67 0.89 5.57 16 15 C -0.26 -5.86 5.47 -19.75 -0.11 -5.97 16 16 C 0.54 10.18 3.38 71.24 0.24 10.42 16 17 F -0.17 -3.48 17.30 44.97 0.78 -2.70 16 18 F -0.17 -2.97 16.47 44.97 0.74 -2.23 16 19 F -0.17 -3.25 16.53 44.97 0.74 -2.51 16 20 C 0.01 0.32 9.32 22.47 0.21 0.53 16 21 C -0.12 -4.26 6.30 22.55 0.14 -4.12 16 22 Cl -0.03 -1.00 26.34 -2.72 -0.07 -1.07 16 23 C 0.08 3.70 6.67 38.80 0.26 3.96 16 24 C -0.14 -5.28 9.78 22.39 0.22 -5.06 16 25 C -0.10 -3.34 10.01 22.29 0.22 -3.11 16 26 C -0.16 -5.10 10.04 22.29 0.22 -4.87 16 27 C -0.08 -3.47 10.09 22.41 0.23 -3.24 16 28 C -0.14 -6.78 6.33 -20.04 -0.13 -6.91 16 29 H 0.28 13.33 8.30 -92.70 -0.77 12.56 16 30 H 0.19 10.12 5.05 -2.91 -0.01 10.11 16 31 H 0.21 3.54 7.60 -2.91 -0.02 3.52 16 32 H 0.18 3.59 7.68 -2.91 -0.02 3.57 16 33 H 0.12 4.09 7.87 -2.91 -0.02 4.06 16 34 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 36 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -62.44 343.11 7.32 -55.11 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 1.18 Total: 20.50 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.56 Total: -24.70 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -2.64 Total: -83.64 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 2.26 Total: -7.44 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.07 Total: -1.07 kcal Total: -62.44 7.32 -55.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000167340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.491 kcal (2) G-P(sol) polarization free energy of solvation -62.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds