Wall clock time and date at job start Tue Mar 31 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99868 * 2 1 4 4 H 1.48499 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46888 * 299.99548 * 3 2 1 6 6 H 1.48500 * 109.47174 * 59.99706 * 3 2 1 7 7 C 1.38711 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00311 * 179.97438 * 7 2 1 9 9 O 1.34788 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.35551 * 116.99996 * 185.05613 * 9 7 2 11 11 C 1.39552 * 119.77322 * 174.45191 * 10 9 7 12 12 C 1.36254 * 120.38845 * 179.97438 * 11 10 9 13 13 C 1.40451 * 119.97489 * 0.02562 * 12 11 10 14 14 C 1.41649 * 120.11552 * 179.97438 * 13 12 11 15 15 C 1.38323 * 118.75954 * 180.02562 * 14 13 12 16 16 C 1.47457 * 120.57497 * 180.02562 * 15 14 13 17 17 N 1.29223 * 124.84050 * 359.67739 * 16 15 14 18 18 C 1.34399 * 117.90618 * 179.80691 * 17 16 15 19 19 C 1.41268 * 128.77020 * 180.17141 * 18 17 16 20 20 C 1.36107 * 120.54211 * 180.30506 * 19 18 17 21 21 C 1.38791 * 120.78186 * 0.02562 * 20 19 18 22 22 C 1.37681 * 120.00820 * 0.02562 * 21 20 19 23 23 C 1.39352 * 120.05358 * 359.97438 * 22 21 20 24 24 S 1.75815 * 124.84350 * 179.97438 * 16 15 14 25 25 C 1.46656 * 118.85382 * 359.97438 * 15 14 13 26 26 O 1.21702 * 119.92787 * 180.02562 * 25 15 14 27 27 O 1.34348 * 120.14675 * 0.27632 * 25 15 14 28 28 C 1.35095 * 121.40188 * 359.43761 * 27 25 15 29 29 C 1.38662 * 119.77510 * 354.42440 * 10 9 7 30 30 H 0.96998 * 120.00006 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.81174 * 359.97438 * 11 10 9 32 32 H 1.08000 * 120.01179 * 179.97438 * 12 11 10 33 33 H 1.08001 * 120.62292 * 0.03782 * 14 13 12 34 34 H 1.07999 * 119.73286 * 0.28682 * 19 18 17 35 35 H 1.07995 * 119.61147 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.99520 * 180.02562 * 21 20 19 37 37 H 1.08004 * 119.97198 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.02635 * 0.02562 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3348 -2.3686 0.0005 10 6 2.0690 -3.5030 0.1075 11 6 1.4261 -4.7355 0.2304 12 6 2.1518 -5.8837 0.3382 13 6 3.5553 -5.8305 0.3266 14 6 4.3126 -7.0222 0.4390 15 6 5.6932 -6.9372 0.4250 16 6 6.5206 -8.1524 0.5388 17 7 6.0571 -9.3523 0.6627 18 6 6.9400 -10.3617 0.7515 19 6 6.6909 -11.7455 0.8876 20 6 7.7227 -12.6294 0.9691 21 6 9.0388 -12.1912 0.9209 22 6 9.3131 -10.8484 0.7897 23 6 8.2701 -9.9281 0.7048 24 16 8.2786 -8.1748 0.5329 25 6 6.3197 -5.6178 0.2937 26 8 7.5327 -5.5204 0.2786 27 8 5.5576 -4.5158 0.1951 28 6 4.2087 -4.5898 0.2023 29 6 3.4537 -3.4309 0.0936 30 1 -0.4850 0.8400 -0.0004 31 1 0.3471 -4.7796 0.2401 32 1 1.6480 -6.8342 0.4334 33 1 3.8214 -7.9794 0.5338 34 1 5.6733 -12.1051 0.9276 35 1 7.5150 -13.6841 1.0725 36 1 9.8478 -12.9036 0.9862 37 1 10.3374 -10.5080 0.7527 38 1 3.9441 -2.4734 -0.0019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001799117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:10 Heat of formation + Delta-G solvation = 1.567912 kcal Electronic energy + Delta-G solvation = -27618.334153 eV Core-core repulsion = 23483.831448 eV Total energy + Delta-G solvation = -4134.502705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 365.055 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.42317 -40.15742 -39.39220 -37.78614 -37.09181 -36.32561 -33.97885 -32.86904 -31.18994 -30.50276 -30.10070 -28.45105 -26.20583 -25.07965 -23.90828 -23.70936 -22.87445 -22.14106 -20.98822 -19.34840 -18.68697 -18.36190 -17.58036 -17.14332 -16.43310 -16.39583 -16.20936 -15.43632 -15.12750 -15.06531 -14.74620 -14.69055 -14.67861 -14.30521 -14.01166 -13.71600 -13.50465 -13.25022 -12.95962 -12.81302 -12.48701 -12.28563 -12.19358 -12.01210 -11.72708 -11.61012 -11.34912 -11.33830 -10.80063 -10.75302 -10.14538 -10.10471 -10.05337 -9.95500 -9.61126 -9.33796 -8.58438 -8.46729 -8.12960 -7.38415 -7.11660 -4.57505 -0.04586 0.81711 1.07014 1.33030 1.55860 1.85516 2.03414 2.32141 2.65512 2.83001 2.85335 2.92963 3.18996 3.51573 3.66436 3.73040 4.08926 4.38260 4.49861 4.54171 4.60268 4.71000 4.80385 4.87373 5.06879 5.22013 5.22728 5.30758 5.47895 5.59560 5.75006 5.86906 5.91908 5.99562 6.04864 6.09580 6.17501 6.24734 6.43424 6.53158 6.60117 6.65233 6.84265 7.00574 7.35067 7.46285 7.64136 7.72573 8.30661 8.90628 10.01446 Molecular weight = 365.06amu Principal moments of inertia in cm(-1) A = 0.025055 B = 0.002006 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.292858 B =13957.421139 C =15057.324215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.044 3.956 3 Si 0.952 3.048 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.380 4.380 8 H 0.110 0.890 9 O -0.127 6.127 10 C 0.187 3.813 11 C -0.185 4.185 12 C -0.011 4.011 13 C -0.266 4.266 14 C 0.111 3.889 15 C -0.268 4.268 16 C 0.207 3.793 17 N -0.494 5.494 18 C 0.097 3.903 19 C -0.074 4.074 20 C -0.110 4.110 21 C -0.117 4.117 22 C -0.067 4.067 23 C -0.209 4.209 24 S 0.118 5.882 25 C 0.526 3.474 26 O -0.473 6.473 27 O -0.262 6.262 28 C 0.215 3.785 29 C -0.271 4.271 30 H 0.283 0.717 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.150 0.850 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.435 -16.009 1.320 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.167 4.167 3 Si 0.774 3.226 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.453 4.453 8 H 0.128 0.872 9 O -0.023 6.023 10 C 0.125 3.875 11 C -0.204 4.204 12 C -0.030 4.030 13 C -0.268 4.268 14 C 0.087 3.913 15 C -0.275 4.275 16 C -0.071 4.071 17 N -0.209 5.209 18 C -0.025 4.025 19 C -0.095 4.095 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.090 4.090 23 C -0.328 4.328 24 S 0.377 5.623 25 C 0.375 3.625 26 O -0.363 6.363 27 O -0.173 6.173 28 C 0.170 3.830 29 C -0.291 4.291 30 H 0.094 0.906 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.864 -14.746 1.201 17.247 hybrid contribution 0.164 -0.190 0.067 0.260 sum 9.028 -14.936 1.268 17.498 Atomic orbital electron populations 1.70004 1.06474 1.29542 1.39218 1.25640 0.96082 0.99860 0.95075 0.85446 0.79613 0.78535 0.78973 1.18175 1.19366 1.19342 1.21937 0.92938 0.80041 1.50433 0.87228 1.83886 1.35540 1.12298 1.70602 1.19144 0.88951 0.87732 0.91681 1.20057 1.00631 0.89708 1.10040 1.20535 0.90852 0.97947 0.93642 1.17613 0.94878 0.91443 1.22830 1.22032 0.91405 0.98063 0.79752 1.19320 0.92819 0.89316 1.26025 1.24464 0.93168 0.92675 0.96799 1.66487 1.36277 0.97685 1.20458 1.19130 0.86874 0.94051 1.02403 1.20409 1.00094 0.89075 0.99930 1.20634 0.92388 0.99633 1.00412 1.21056 0.96946 0.94859 1.01044 1.20320 0.97207 0.91999 0.99432 1.24241 0.98293 0.99571 1.10684 1.85703 1.06275 0.96773 1.73523 1.19915 0.85950 0.82027 0.74602 1.90855 1.11086 1.85134 1.49200 1.83640 1.18278 1.38143 1.77219 1.18872 0.78007 0.93900 0.92265 1.20290 0.92720 0.97481 1.18655 0.90635 0.84888 0.84746 0.83274 0.85158 0.85205 0.85207 0.85580 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.31 13.67 55.48 0.76 -19.55 16 2 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 3 Si 0.95 17.41 29.55 -169.99 -5.02 12.39 16 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 6 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.38 -8.87 9.48 30.91 0.29 -8.57 16 8 H 0.11 2.37 5.17 -52.48 -0.27 2.10 16 9 O -0.13 -2.98 9.74 0.78 0.01 -2.97 16 10 C 0.19 3.70 6.65 -38.94 -0.26 3.44 16 11 C -0.19 -3.04 9.91 -39.81 -0.39 -3.44 16 12 C -0.01 -0.15 9.71 -39.46 -0.38 -0.53 16 13 C -0.27 -4.20 5.74 -106.80 -0.61 -4.81 16 14 C 0.11 1.63 9.48 -38.25 -0.36 1.27 16 15 C -0.27 -4.47 6.05 -102.71 -0.62 -5.09 16 16 C 0.21 3.45 7.29 -14.90 -0.11 3.34 16 17 N -0.49 -7.95 10.14 -8.54 -0.09 -8.04 16 18 C 0.10 1.43 6.94 -84.94 -0.59 0.84 16 19 C -0.07 -0.85 10.05 -39.20 -0.39 -1.25 16 20 C -0.11 -1.00 9.94 -40.14 -0.40 -1.40 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.07 -0.74 10.07 -39.37 -0.40 -1.14 16 23 C -0.21 -2.96 6.53 -38.52 -0.25 -3.21 16 24 S 0.12 1.85 21.02 -107.50 -2.26 -0.41 16 25 C 0.53 9.76 8.13 34.13 0.28 10.03 16 26 O -0.47 -9.41 15.45 -19.46 -0.30 -9.71 16 27 O -0.26 -4.95 9.81 -21.29 -0.21 -5.16 16 28 C 0.22 3.90 6.74 -38.44 -0.26 3.64 16 29 C -0.27 -5.22 9.08 -39.24 -0.36 -5.58 16 30 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 31 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.15 1.85 7.83 -52.49 -0.41 1.44 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.15 2.87 5.60 -52.49 -0.29 2.57 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -27.56 353.29 -9.75 -37.31 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -2.65 Total: 3.83 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -5.31 Total: -13.01 kcal Atomic # 7 Polarization: -28.26 SS G_CDS: 0.67 Total: -27.58 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.50 Total: -17.85 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.02 Total: 12.39 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.26 Total: -0.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.56 -9.75 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001799117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.877 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds