Wall clock time and date at job start Tue Mar 31 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99868 * 2 1 4 4 H 1.48499 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46888 * 299.99548 * 3 2 1 6 6 H 1.48500 * 109.47174 * 59.99706 * 3 2 1 7 7 C 1.38711 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00311 * 179.97438 * 7 2 1 9 9 O 1.34788 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.35551 * 116.99996 * 185.05613 * 9 7 2 11 11 C 1.39552 * 119.77322 * 174.45191 * 10 9 7 12 12 C 1.36254 * 120.38845 * 179.97438 * 11 10 9 13 13 C 1.40451 * 119.97489 * 0.02562 * 12 11 10 14 14 C 1.41649 * 120.11552 * 179.97438 * 13 12 11 15 15 C 1.38323 * 118.75954 * 180.02562 * 14 13 12 16 16 C 1.47457 * 120.57497 * 180.02562 * 15 14 13 17 17 N 1.29223 * 124.84050 * 359.67739 * 16 15 14 18 18 C 1.34399 * 117.90618 * 179.80691 * 17 16 15 19 19 C 1.41268 * 128.77020 * 180.17141 * 18 17 16 20 20 C 1.36107 * 120.54211 * 180.30506 * 19 18 17 21 21 C 1.38791 * 120.78186 * 0.02562 * 20 19 18 22 22 C 1.37681 * 120.00820 * 0.02562 * 21 20 19 23 23 C 1.39352 * 120.05358 * 359.97438 * 22 21 20 24 24 S 1.75815 * 124.84350 * 179.97438 * 16 15 14 25 25 C 1.46656 * 118.85382 * 359.97438 * 15 14 13 26 26 O 1.21702 * 119.92787 * 180.02562 * 25 15 14 27 27 O 1.34348 * 120.14675 * 0.27632 * 25 15 14 28 28 C 1.35095 * 121.40188 * 359.43761 * 27 25 15 29 29 C 1.38662 * 119.77510 * 354.42440 * 10 9 7 30 30 H 0.96998 * 120.00006 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.81174 * 359.97438 * 11 10 9 32 32 H 1.08000 * 120.01179 * 179.97438 * 12 11 10 33 33 H 1.08001 * 120.62292 * 0.03782 * 14 13 12 34 34 H 1.07999 * 119.73286 * 0.28682 * 19 18 17 35 35 H 1.07995 * 119.61147 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.99520 * 180.02562 * 21 20 19 37 37 H 1.08004 * 119.97198 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.02635 * 0.02562 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3348 -2.3686 0.0005 10 6 2.0690 -3.5030 0.1075 11 6 1.4261 -4.7355 0.2304 12 6 2.1518 -5.8837 0.3382 13 6 3.5553 -5.8305 0.3266 14 6 4.3126 -7.0222 0.4390 15 6 5.6932 -6.9372 0.4250 16 6 6.5206 -8.1524 0.5388 17 7 6.0571 -9.3523 0.6627 18 6 6.9400 -10.3617 0.7515 19 6 6.6909 -11.7455 0.8876 20 6 7.7227 -12.6294 0.9691 21 6 9.0388 -12.1912 0.9209 22 6 9.3131 -10.8484 0.7897 23 6 8.2701 -9.9281 0.7048 24 16 8.2786 -8.1748 0.5329 25 6 6.3197 -5.6178 0.2937 26 8 7.5327 -5.5204 0.2786 27 8 5.5576 -4.5158 0.1951 28 6 4.2087 -4.5898 0.2023 29 6 3.4537 -3.4309 0.0936 30 1 -0.4850 0.8400 -0.0004 31 1 0.3471 -4.7796 0.2401 32 1 1.6480 -6.8342 0.4334 33 1 3.8214 -7.9794 0.5338 34 1 5.6733 -12.1051 0.9276 35 1 7.5150 -13.6841 1.0725 36 1 9.8478 -12.9036 0.9862 37 1 10.3374 -10.5080 0.7527 38 1 3.9441 -2.4734 -0.0019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001799117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:08 Heat of formation + Delta-G solvation = -11.892138 kcal Electronic energy + Delta-G solvation = -27618.917825 eV Core-core repulsion = 23483.831448 eV Total energy + Delta-G solvation = -4135.086376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 365.055 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.91326 -41.16822 -40.88389 -39.29095 -38.25757 -37.64555 -35.34434 -34.41074 -32.04413 -31.90415 -31.34636 -29.66699 -27.74593 -26.39001 -25.32373 -24.88979 -24.04474 -23.33093 -22.14402 -20.72749 -20.08044 -19.66160 -18.85635 -18.55692 -17.95113 -17.79856 -17.33701 -16.52282 -16.46570 -16.26387 -16.14793 -15.95642 -15.90460 -15.77118 -15.00239 -14.88371 -14.73873 -14.67131 -14.36763 -14.32280 -13.72254 -13.40621 -13.39609 -13.12583 -12.95235 -12.83020 -12.69109 -12.68058 -12.16019 -11.86688 -11.62732 -11.43006 -11.36996 -11.12798 -10.83662 -10.81750 -9.89100 -9.74871 -9.16798 -8.75867 -8.69761 -6.32692 -1.24789 -0.35079 0.09943 0.19537 0.21366 0.63750 0.72134 1.17861 1.19505 1.34989 1.40403 1.51743 1.85329 2.06030 2.46960 2.62843 2.75455 2.94009 3.05434 3.14808 3.41853 3.51935 3.72166 3.96379 4.01638 4.10972 4.14790 4.32550 4.36756 4.47707 4.57815 4.60191 4.70052 4.78323 4.95093 4.96449 5.05361 5.18184 5.27772 5.29686 5.38530 5.44545 5.61829 5.78421 5.81333 5.97828 6.23637 6.49104 6.73440 7.37891 8.49011 Molecular weight = 365.06amu Principal moments of inertia in cm(-1) A = 0.025055 B = 0.002006 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.292858 B =13957.421139 C =15057.324215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C -0.003 4.003 3 Si 1.014 2.986 4 H -0.256 1.256 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.417 4.417 8 H 0.109 0.891 9 O -0.179 6.179 10 C 0.186 3.814 11 C -0.196 4.196 12 C 0.022 3.978 13 C -0.250 4.250 14 C 0.130 3.870 15 C -0.256 4.256 16 C 0.178 3.822 17 N -0.484 5.484 18 C 0.056 3.944 19 C -0.078 4.078 20 C -0.100 4.100 21 C -0.094 4.094 22 C -0.085 4.085 23 C -0.212 4.212 24 S 0.081 5.919 25 C 0.518 3.482 26 O -0.492 6.492 27 O -0.275 6.275 28 C 0.200 3.800 29 C -0.283 4.283 30 H 0.283 0.717 31 H 0.152 0.848 32 H 0.193 0.807 33 H 0.188 0.812 34 H 0.147 0.853 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.143 0.857 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.175 -22.373 1.929 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.206 4.206 3 Si 0.833 3.167 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.491 4.491 8 H 0.127 0.873 9 O -0.079 6.079 10 C 0.128 3.872 11 C -0.215 4.215 12 C 0.004 3.996 13 C -0.252 4.252 14 C 0.107 3.893 15 C -0.263 4.263 16 C -0.102 4.102 17 N -0.199 5.199 18 C -0.065 4.065 19 C -0.099 4.099 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.108 4.108 23 C -0.331 4.331 24 S 0.340 5.660 25 C 0.368 3.632 26 O -0.383 6.383 27 O -0.186 6.186 28 C 0.155 3.845 29 C -0.303 4.303 30 H 0.092 0.908 31 H 0.169 0.831 32 H 0.210 0.790 33 H 0.205 0.795 34 H 0.165 0.835 35 H 0.189 0.811 36 H 0.188 0.812 37 H 0.160 0.840 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.635 -21.175 1.813 23.765 hybrid contribution 0.187 0.776 -0.045 0.800 sum 10.822 -20.399 1.768 23.159 Atomic orbital electron populations 1.70093 1.07857 1.29951 1.44255 1.26570 0.96798 1.02621 0.94609 0.84576 0.78293 0.74774 0.79040 1.17907 1.18874 1.18867 1.22061 0.93017 0.80791 1.53278 0.87335 1.83906 1.36012 1.12841 1.75184 1.19782 0.89261 0.88548 0.89582 1.20425 1.01945 0.88918 1.10170 1.21128 0.89619 0.99381 0.89429 1.17947 0.95967 0.90752 1.20522 1.22323 0.90359 0.98853 0.77740 1.19395 0.93773 0.88524 1.24602 1.24354 0.93288 0.92868 0.99647 1.66426 1.37030 0.97659 1.18752 1.19566 0.86889 0.95097 1.04903 1.20788 1.01932 0.87820 0.99343 1.21179 0.91682 1.01306 0.97854 1.21631 0.98337 0.94384 0.97159 1.20721 0.97422 0.92687 0.99991 1.24382 0.99230 0.98316 1.11170 1.85718 1.06520 0.99516 1.74262 1.20301 0.85877 0.82612 0.74411 1.90847 1.11962 1.85445 1.49997 1.83605 1.18840 1.39025 1.77163 1.19044 0.77783 0.94654 0.93037 1.20332 0.93072 0.97726 1.19158 0.90759 0.83056 0.78977 0.79497 0.83505 0.81106 0.81159 0.83960 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.76 13.67 21.62 0.30 -47.46 16 2 C 0.00 -0.15 5.49 84.85 0.47 0.31 16 3 Si 1.01 38.56 29.55 68.60 2.03 40.59 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 7 C -0.42 -21.32 9.48 67.93 0.64 -20.68 16 8 H 0.11 5.22 5.17 -2.91 -0.02 5.21 16 9 O -0.18 -9.06 9.74 -20.13 -0.20 -9.26 16 10 C 0.19 7.65 6.65 22.69 0.15 7.80 16 11 C -0.20 -6.13 9.91 22.12 0.22 -5.91 16 12 C 0.02 0.54 9.71 22.35 0.22 0.76 16 13 C -0.25 -7.17 5.74 -21.28 -0.12 -7.30 16 14 C 0.13 3.33 9.48 23.13 0.22 3.55 16 15 C -0.26 -8.12 6.05 -18.63 -0.11 -8.24 16 16 C 0.18 5.64 7.29 87.51 0.64 6.27 16 17 N -0.48 -14.27 10.14 -180.94 -1.83 -16.10 16 18 C 0.06 1.47 6.94 39.92 0.28 1.75 16 19 C -0.08 -1.44 10.05 22.52 0.23 -1.21 16 20 C -0.10 -1.21 9.94 21.91 0.22 -0.99 16 21 C -0.09 -1.15 10.05 22.27 0.22 -0.92 16 22 C -0.09 -1.59 10.07 22.41 0.23 -1.36 16 23 C -0.21 -5.54 6.53 22.96 0.15 -5.39 16 24 S 0.08 2.51 21.02 -56.49 -1.19 1.33 16 25 C 0.52 19.22 8.13 70.02 0.57 19.78 16 26 O -0.49 -19.95 15.45 19.21 0.30 -19.65 16 27 O -0.28 -10.60 9.81 12.67 0.12 -10.47 16 28 C 0.20 7.22 6.74 23.01 0.16 7.37 16 29 C -0.28 -11.40 9.08 22.49 0.20 -11.19 16 30 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.19 3.51 7.83 -2.91 -0.02 3.49 16 34 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 36 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 37 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.13 5.70 5.60 -2.91 -0.02 5.69 16 Total: -1.00 -68.48 353.29 5.25 -63.23 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 1.16 Total: 13.39 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 4.57 Total: -15.58 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -1.54 Total: -63.57 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: 0.22 Total: -39.38 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.19 Total: 1.33 kcal Total: -68.48 5.25 -63.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001799117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.333 kcal (2) G-P(sol) polarization free energy of solvation -68.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds