Wall clock time and date at job start Tue Mar 31 2020 05:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 C 1.52998 * 109.47166 * 239.99739 * 2 1 3 5 5 C 1.50702 * 109.46713 * 119.99613 * 2 1 3 6 6 C 1.38393 * 119.83658 * 60.00239 * 5 2 1 7 7 C 1.37909 * 120.16149 * 179.97438 * 6 5 2 8 8 C 1.39756 * 119.83470 * 359.97373 * 7 6 5 9 9 C 1.47487 * 120.16019 * 179.97438 * 8 7 6 10 10 O 1.34272 * 118.87877 * 311.75541 * 9 8 7 11 11 C 1.34882 * 122.45980 * 179.97438 * 10 9 8 12 12 C 1.39023 * 120.65165 * 180.02562 * 11 10 9 13 13 C 1.37837 * 119.96678 * 180.02562 * 12 11 10 14 14 C 1.38748 * 120.68105 * 0.04206 * 13 12 11 15 15 C 1.37741 * 120.28689 * 359.94036 * 14 13 12 16 16 C 1.39496 * 119.58812 * 0.03924 * 15 14 13 17 17 C 1.47528 * 121.18847 * 179.97438 * 16 15 14 18 18 O 1.21963 * 121.32285 * 0.02562 * 17 16 15 19 19 C 1.37662 * 118.87377 * 131.78183 * 9 8 7 20 20 O 1.35744 * 120.37634 * 0.02562 * 19 9 8 21 21 C 1.34756 * 117.00388 * 264.79427 * 20 19 9 22 22 H 1.08007 * 119.99699 * 359.97438 * 21 20 19 23 23 C 1.38609 * 120.00535 * 179.97438 * 21 20 19 24 24 N 1.31593 * 119.99722 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00227 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47290 * 90.00354 * 25 23 21 27 27 H 1.48507 * 109.47328 * 210.00117 * 25 23 21 28 28 H 1.48499 * 109.47608 * 330.00223 * 25 23 21 29 29 C 1.39754 * 119.67839 * 0.25843 * 8 7 6 30 30 C 1.37913 * 119.83206 * 359.51040 * 29 8 7 31 31 H 1.08996 * 109.47025 * 299.99874 * 1 2 3 32 32 H 1.09000 * 109.46839 * 60.00676 * 1 2 3 33 33 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46757 * 299.99374 * 3 2 1 36 36 H 1.09003 * 109.47300 * 59.99529 * 3 2 1 37 37 H 1.09004 * 109.47138 * 299.99570 * 4 2 1 38 38 H 1.09000 * 109.47064 * 60.00140 * 4 2 1 39 39 H 1.09000 * 109.46970 * 180.02562 * 4 2 1 40 40 H 1.08002 * 119.92108 * 359.97438 * 6 5 2 41 41 H 1.08004 * 120.08354 * 180.02562 * 7 6 5 42 42 H 1.08000 * 120.02049 * 359.75370 * 12 11 10 43 43 H 1.07995 * 119.66041 * 179.97438 * 13 12 11 44 44 H 1.08009 * 119.85992 * 179.97438 * 14 13 12 45 45 H 1.08001 * 120.21093 * 180.02562 * 15 14 13 46 46 H 0.96995 * 119.99940 * 179.97438 * 24 23 21 47 47 H 1.08003 * 120.08373 * 179.72009 * 29 8 7 48 48 H 1.08007 * 119.91537 * 180.21279 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 6 1.6959 -2.0353 1.4462 7 6 2.1523 -2.6920 2.5698 8 6 2.9568 -2.0163 3.4914 9 6 3.4483 -2.7115 4.6957 10 8 2.5789 -3.4156 5.4383 11 6 2.9499 -4.0791 6.5525 12 6 2.0180 -4.7972 7.2931 13 6 2.4125 -5.4697 8.4298 14 6 3.7352 -5.4385 8.8477 15 6 4.6745 -4.7333 8.1283 16 6 4.2881 -4.0489 6.9759 17 6 5.2647 -3.2822 6.1790 18 8 6.4393 -3.2229 6.5018 19 6 4.7827 -2.6159 5.0204 20 8 5.6282 -1.8926 4.2429 21 6 6.3212 -2.5649 3.3029 22 1 6.1905 -3.6316 3.1953 23 6 7.2019 -1.8876 2.4740 24 7 7.3615 -0.5880 2.6054 25 14 8.1630 -2.8197 1.1715 26 1 7.3845 -2.8479 -0.0927 27 1 9.4637 -2.1426 0.9368 28 1 8.4051 -4.2096 1.6348 29 6 3.2883 -0.6770 3.2693 30 6 2.8285 -0.0348 2.1388 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 3.1301 1.4425 -0.0005 35 1 1.6768 1.9562 -0.8901 36 1 1.6767 1.9564 0.8900 37 1 1.6768 -1.7490 -1.2491 38 1 1.6768 -0.2075 -2.1392 39 1 3.1301 -0.7217 -1.2489 40 1 1.0745 -2.5563 0.7329 41 1 1.8893 -3.7262 2.7367 42 1 0.9846 -4.8246 6.9805 43 1 1.6843 -6.0256 9.0017 44 1 4.0296 -5.9699 9.7407 45 1 5.7039 -4.7103 8.4545 46 1 7.9780 -0.1140 2.0257 47 1 3.9059 -0.1472 3.9795 48 1 3.0868 0.9993 1.9641 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001978411.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:46 Heat of formation + Delta-G solvation = -24.466393 kcal Electronic energy + Delta-G solvation = -32791.564191 eV Core-core repulsion = 28550.271783 eV Total energy + Delta-G solvation = -4241.292408 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.151 amu Computer time = 5.36 seconds Orbital eigenvalues (eV) -41.38315 -39.50851 -38.34735 -38.11248 -36.55971 -35.92870 -32.32771 -31.51719 -31.11324 -30.75181 -30.14283 -28.48913 -27.25945 -27.18836 -25.01882 -24.57840 -23.41664 -22.25318 -21.85177 -21.52579 -19.08803 -19.01463 -18.41310 -17.68334 -17.12775 -16.04000 -15.90290 -15.67887 -15.13793 -14.93589 -14.64440 -14.56960 -14.17341 -14.13817 -13.97906 -13.88585 -13.63220 -13.47515 -13.26568 -13.09163 -12.77440 -12.57139 -12.23275 -12.18486 -12.04755 -11.81794 -11.72852 -11.60953 -11.50798 -11.46598 -11.16807 -11.01964 -10.85369 -10.61975 -10.45087 -10.36996 -10.24649 -9.84018 -9.17342 -9.08458 -8.94078 -8.44395 -8.25844 -8.13930 -7.38698 -6.07798 -3.72655 0.72011 1.03177 1.41586 1.92275 2.04970 2.72819 3.18735 3.27072 3.30700 3.34653 4.00458 4.13610 4.32546 4.43343 4.60212 4.71106 4.81836 4.86060 5.02978 5.09159 5.11808 5.20905 5.30310 5.35690 5.40255 5.40814 5.47346 5.61366 5.65237 5.67618 5.81398 5.84229 5.85592 5.90461 5.93324 6.01450 6.05060 6.07224 6.12190 6.13447 6.28361 6.32957 6.39020 6.39443 6.43819 6.52291 6.59046 6.72101 6.86735 6.99493 7.04091 7.38284 7.40606 7.66733 8.19004 8.29586 9.35619 9.99074 11.10630 Molecular weight = 364.15amu Principal moments of inertia in cm(-1) A = 0.008190 B = 0.004017 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.849796 B = 6968.937060 C = 9563.992061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.062 4.062 6 C -0.129 4.129 7 C -0.088 4.088 8 C -0.036 4.036 9 C 0.108 3.892 10 O -0.217 6.217 11 C 0.155 3.845 12 C -0.150 4.150 13 C -0.064 4.064 14 C -0.163 4.163 15 C -0.031 4.031 16 C -0.220 4.220 17 C 0.395 3.605 18 O -0.446 6.446 19 C -0.030 4.030 20 O -0.191 6.191 21 C -0.358 4.358 22 H 0.065 0.935 23 C 0.036 3.964 24 N -0.876 5.876 25 Si 0.926 3.074 26 H -0.278 1.278 27 H -0.280 1.280 28 H -0.273 1.273 29 C -0.038 4.038 30 C -0.120 4.120 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.139 0.861 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.138 0.862 46 H 0.261 0.739 47 H 0.133 0.867 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.308 -3.700 1.230 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.029 4.029 3 C -0.202 4.202 4 C -0.196 4.196 5 C -0.062 4.062 6 C -0.147 4.147 7 C -0.106 4.106 8 C -0.036 4.036 9 C 0.062 3.938 10 O -0.123 6.123 11 C 0.109 3.891 12 C -0.169 4.169 13 C -0.082 4.082 14 C -0.181 4.181 15 C -0.049 4.049 16 C -0.222 4.222 17 C 0.278 3.722 18 O -0.326 6.326 19 C -0.079 4.079 20 O -0.103 6.103 21 C -0.434 4.434 22 H 0.083 0.917 23 C -0.164 4.164 24 N -0.516 5.516 25 Si 0.752 3.248 26 H -0.204 1.204 27 H -0.206 1.206 28 H -0.198 1.198 29 C -0.056 4.056 30 C -0.138 4.138 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.157 0.843 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.156 0.844 46 H 0.071 0.929 47 H 0.151 0.849 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.750 -3.309 1.235 16.141 hybrid contribution 0.825 -0.772 -0.500 1.235 sum -14.925 -4.081 0.735 15.491 Atomic orbital electron populations 1.21877 0.94012 1.01857 1.01563 1.19488 0.95326 0.95156 0.92938 1.21974 1.01850 0.94866 1.01538 1.21892 1.01824 0.99977 0.95902 1.19848 0.97173 0.93925 0.95247 1.20664 1.01993 0.94332 0.97664 1.21090 0.96343 0.99280 0.93908 1.17953 1.00192 0.93598 0.91902 1.21179 0.89135 0.93487 0.90037 1.83009 1.39880 1.55809 1.33573 1.19319 0.92532 0.91992 0.85221 1.20391 0.99183 1.00883 0.96425 1.21071 0.96242 0.96374 0.94521 1.21112 0.93199 1.02308 1.01447 1.21150 1.00416 0.91942 0.91433 1.21111 0.93968 1.06408 1.00752 1.19590 0.88318 0.79103 0.85183 1.90701 1.17641 1.55277 1.69010 1.20579 0.89861 1.01202 0.96227 1.84017 1.52151 1.29303 1.44814 1.20897 1.22150 0.91935 1.08434 0.91717 1.24899 0.97264 0.95852 0.98355 1.70013 1.36376 1.06546 1.38700 0.85944 0.79168 0.79076 0.80588 1.20386 1.20573 1.19828 1.21265 0.94509 0.92411 0.97439 1.21018 0.98200 1.00544 0.93992 0.92547 0.92665 0.92531 0.91775 0.92738 0.92244 0.92524 0.92683 0.92106 0.86383 0.86219 0.84335 0.84785 0.85188 0.84376 0.92884 0.84866 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.29 37.16 0.31 -1.07 16 2 C -0.03 -0.35 0.85 -155.66 -0.13 -0.49 16 3 C -0.15 -1.68 7.13 37.16 0.26 -1.41 16 4 C -0.14 -1.63 8.29 37.16 0.31 -1.33 16 5 C -0.06 -0.94 4.77 -104.51 -0.50 -1.44 16 6 C -0.13 -1.93 8.69 -39.64 -0.34 -2.27 16 7 C -0.09 -1.49 9.73 -39.13 -0.38 -1.87 16 8 C -0.04 -0.71 5.38 -104.99 -0.56 -1.28 16 9 C 0.11 2.25 6.49 -36.02 -0.23 2.01 16 10 O -0.22 -3.87 9.60 4.18 0.04 -3.83 16 11 C 0.16 2.56 6.77 -38.48 -0.26 2.30 16 12 C -0.15 -1.85 10.00 -39.44 -0.39 -2.25 16 13 C -0.06 -0.66 10.01 -39.54 -0.40 -1.06 16 14 C -0.16 -1.86 10.03 -39.57 -0.40 -2.26 16 15 C -0.03 -0.48 9.66 -39.29 -0.38 -0.85 16 16 C -0.22 -4.07 5.89 -104.83 -0.62 -4.69 16 17 C 0.40 9.25 6.99 -34.32 -0.24 9.01 16 18 O -0.45 -11.77 17.20 -10.10 -0.17 -11.94 16 19 C -0.03 -0.73 5.50 -38.32 -0.21 -0.94 16 20 O -0.19 -5.46 7.50 -14.77 -0.11 -5.58 16 21 C -0.36 -10.51 9.82 30.87 0.30 -10.21 16 22 H 0.07 1.88 7.75 -52.48 -0.41 1.47 16 23 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 24 N -0.88 -26.49 13.67 55.48 0.76 -25.73 16 25 Si 0.93 22.32 29.55 -169.99 -5.02 17.30 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 29 C -0.04 -0.76 8.66 -39.13 -0.34 -1.10 16 30 C -0.12 -2.07 8.96 -39.64 -0.36 -2.42 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.55 7.37 -51.93 -0.38 0.16 16 34 H 0.06 0.83 7.50 -51.93 -0.39 0.44 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.66 7.51 -51.93 -0.39 0.27 16 37 H 0.06 0.63 7.37 -51.93 -0.38 0.25 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.12 1.46 7.08 -52.49 -0.37 1.08 16 41 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 45 H 0.14 2.06 7.79 -52.49 -0.41 1.65 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.13 2.90 7.46 -52.48 -0.39 2.50 16 48 H 0.13 2.02 5.87 -52.48 -0.31 1.71 16 LS Contribution 403.17 15.07 6.08 6.08 Total: -1.00 -34.38 403.17 -9.46 -43.84 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.37 Total: 2.51 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -4.66 Total: -22.64 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.76 Total: -25.73 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.24 Total: -21.35 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.38 -9.46 -43.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001978411.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.372 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.36 seconds