Wall clock time and date at job start Tue Mar 31 2020 05:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 C 1.52998 * 109.47166 * 239.99739 * 2 1 3 5 5 C 1.50702 * 109.46713 * 119.99613 * 2 1 3 6 6 C 1.38393 * 119.83658 * 60.00239 * 5 2 1 7 7 C 1.37909 * 120.16149 * 179.97438 * 6 5 2 8 8 C 1.39756 * 119.83470 * 359.97373 * 7 6 5 9 9 C 1.47487 * 120.16019 * 179.97438 * 8 7 6 10 10 O 1.34272 * 118.87877 * 311.75541 * 9 8 7 11 11 C 1.34882 * 122.45980 * 179.97438 * 10 9 8 12 12 C 1.39023 * 120.65165 * 180.02562 * 11 10 9 13 13 C 1.37837 * 119.96678 * 180.02562 * 12 11 10 14 14 C 1.38748 * 120.68105 * 0.04206 * 13 12 11 15 15 C 1.37741 * 120.28689 * 359.94036 * 14 13 12 16 16 C 1.39496 * 119.58812 * 0.03924 * 15 14 13 17 17 C 1.47528 * 121.18847 * 179.97438 * 16 15 14 18 18 O 1.21963 * 121.32285 * 0.02562 * 17 16 15 19 19 C 1.37662 * 118.87377 * 131.78183 * 9 8 7 20 20 O 1.35744 * 120.37634 * 0.02562 * 19 9 8 21 21 C 1.34756 * 117.00388 * 264.79427 * 20 19 9 22 22 H 1.08007 * 119.99699 * 359.97438 * 21 20 19 23 23 C 1.38609 * 120.00535 * 179.97438 * 21 20 19 24 24 N 1.31593 * 119.99722 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00227 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47290 * 90.00354 * 25 23 21 27 27 H 1.48507 * 109.47328 * 210.00117 * 25 23 21 28 28 H 1.48499 * 109.47608 * 330.00223 * 25 23 21 29 29 C 1.39754 * 119.67839 * 0.25843 * 8 7 6 30 30 C 1.37913 * 119.83206 * 359.51040 * 29 8 7 31 31 H 1.08996 * 109.47025 * 299.99874 * 1 2 3 32 32 H 1.09000 * 109.46839 * 60.00676 * 1 2 3 33 33 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46757 * 299.99374 * 3 2 1 36 36 H 1.09003 * 109.47300 * 59.99529 * 3 2 1 37 37 H 1.09004 * 109.47138 * 299.99570 * 4 2 1 38 38 H 1.09000 * 109.47064 * 60.00140 * 4 2 1 39 39 H 1.09000 * 109.46970 * 180.02562 * 4 2 1 40 40 H 1.08002 * 119.92108 * 359.97438 * 6 5 2 41 41 H 1.08004 * 120.08354 * 180.02562 * 7 6 5 42 42 H 1.08000 * 120.02049 * 359.75370 * 12 11 10 43 43 H 1.07995 * 119.66041 * 179.97438 * 13 12 11 44 44 H 1.08009 * 119.85992 * 179.97438 * 14 13 12 45 45 H 1.08001 * 120.21093 * 180.02562 * 15 14 13 46 46 H 0.96995 * 119.99940 * 179.97438 * 24 23 21 47 47 H 1.08003 * 120.08373 * 179.72009 * 29 8 7 48 48 H 1.08007 * 119.91537 * 180.21279 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 6 1.6959 -2.0353 1.4462 7 6 2.1523 -2.6920 2.5698 8 6 2.9568 -2.0163 3.4914 9 6 3.4483 -2.7115 4.6957 10 8 2.5789 -3.4156 5.4383 11 6 2.9499 -4.0791 6.5525 12 6 2.0180 -4.7972 7.2931 13 6 2.4125 -5.4697 8.4298 14 6 3.7352 -5.4385 8.8477 15 6 4.6745 -4.7333 8.1283 16 6 4.2881 -4.0489 6.9759 17 6 5.2647 -3.2822 6.1790 18 8 6.4393 -3.2229 6.5018 19 6 4.7827 -2.6159 5.0204 20 8 5.6282 -1.8926 4.2429 21 6 6.3212 -2.5649 3.3029 22 1 6.1905 -3.6316 3.1953 23 6 7.2019 -1.8876 2.4740 24 7 7.3615 -0.5880 2.6054 25 14 8.1630 -2.8197 1.1715 26 1 7.3845 -2.8479 -0.0927 27 1 9.4637 -2.1426 0.9368 28 1 8.4051 -4.2096 1.6348 29 6 3.2883 -0.6770 3.2693 30 6 2.8285 -0.0348 2.1388 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 3.1301 1.4425 -0.0005 35 1 1.6768 1.9562 -0.8901 36 1 1.6767 1.9564 0.8900 37 1 1.6768 -1.7490 -1.2491 38 1 1.6768 -0.2075 -2.1392 39 1 3.1301 -0.7217 -1.2489 40 1 1.0745 -2.5563 0.7329 41 1 1.8893 -3.7262 2.7367 42 1 0.9846 -4.8246 6.9805 43 1 1.6843 -6.0256 9.0017 44 1 4.0296 -5.9699 9.7407 45 1 5.7039 -4.7103 8.4545 46 1 7.9780 -0.1140 2.0257 47 1 3.9059 -0.1472 3.9795 48 1 3.0868 0.9993 1.9641 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001978411.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:42 Heat of formation + Delta-G solvation = -43.102123 kcal Electronic energy + Delta-G solvation = -32792.372297 eV Core-core repulsion = 28550.271783 eV Total energy + Delta-G solvation = -4242.100514 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.151 amu Computer time = 3.52 seconds Orbital eigenvalues (eV) -42.86907 -40.78814 -40.08127 -39.41956 -38.23889 -37.20929 -34.29527 -33.13417 -32.42242 -32.11960 -31.43285 -29.93580 -28.22828 -28.03450 -27.08994 -26.00986 -24.87775 -23.46447 -23.21404 -22.93936 -20.59804 -20.18894 -20.06977 -19.37804 -18.76333 -17.47578 -17.39717 -17.13594 -16.68661 -16.28369 -16.05020 -15.92754 -15.71579 -15.51109 -15.26985 -15.13530 -15.08103 -14.92273 -14.57233 -14.54670 -14.27593 -13.72416 -13.59514 -13.52089 -13.34416 -13.17409 -13.05950 -12.87765 -12.73052 -12.59488 -12.50389 -12.35296 -12.26669 -12.18605 -11.92975 -11.81703 -11.58941 -11.37581 -10.92996 -10.44127 -10.22921 -10.20197 -9.83929 -9.55760 -9.04337 -8.25269 -5.97565 -0.73564 -0.29729 0.19622 0.51775 0.58955 1.24492 1.28886 1.35801 1.43797 1.79235 2.26268 2.69812 2.73035 2.91147 3.07065 3.31582 3.46898 3.68446 3.79484 3.83696 3.93406 4.06478 4.14825 4.15834 4.21490 4.25279 4.34378 4.40034 4.47582 4.60633 4.63910 4.68646 4.82183 4.84648 4.85473 4.93557 4.94520 4.99631 5.04416 5.07243 5.08369 5.11924 5.16563 5.26631 5.28096 5.35489 5.37823 5.47203 5.51191 5.55693 5.69211 5.71419 6.02277 6.09618 6.15137 6.49609 7.15651 7.95686 8.96040 Molecular weight = 364.15amu Principal moments of inertia in cm(-1) A = 0.008190 B = 0.004017 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.849796 B = 6968.937060 C = 9563.992061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.029 4.029 3 C -0.147 4.147 4 C -0.138 4.138 5 C -0.050 4.050 6 C -0.120 4.120 7 C -0.084 4.084 8 C -0.073 4.073 9 C 0.162 3.838 10 O -0.205 6.205 11 C 0.124 3.876 12 C -0.134 4.134 13 C -0.038 4.038 14 C -0.136 4.136 15 C -0.053 4.053 16 C -0.245 4.245 17 C 0.383 3.617 18 O -0.511 6.511 19 C -0.106 4.106 20 O -0.223 6.223 21 C -0.371 4.371 22 H 0.052 0.948 23 C -0.021 4.021 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.259 1.259 27 H -0.271 1.271 28 H -0.270 1.270 29 C -0.060 4.060 30 C -0.132 4.132 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.160 0.840 41 H 0.143 0.857 42 H 0.176 0.824 43 H 0.193 0.807 44 H 0.173 0.827 45 H 0.127 0.873 46 H 0.264 0.736 47 H 0.095 0.905 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.276 -6.713 0.557 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 C -0.204 4.204 4 C -0.196 4.196 5 C -0.050 4.050 6 C -0.138 4.138 7 C -0.102 4.102 8 C -0.073 4.073 9 C 0.114 3.886 10 O -0.110 6.110 11 C 0.079 3.921 12 C -0.152 4.152 13 C -0.056 4.056 14 C -0.154 4.154 15 C -0.071 4.071 16 C -0.247 4.247 17 C 0.272 3.728 18 O -0.397 6.397 19 C -0.154 4.154 20 O -0.135 6.135 21 C -0.448 4.448 22 H 0.070 0.930 23 C -0.216 4.216 24 N -0.564 5.564 25 Si 0.816 3.184 26 H -0.184 1.184 27 H -0.196 1.196 28 H -0.195 1.195 29 C -0.078 4.078 30 C -0.150 4.150 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.177 0.823 41 H 0.161 0.839 42 H 0.193 0.807 43 H 0.211 0.789 44 H 0.191 0.809 45 H 0.145 0.855 46 H 0.072 0.928 47 H 0.113 0.887 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.784 -6.346 0.593 21.740 hybrid contribution 2.007 0.061 -0.139 2.013 sum -18.777 -6.285 0.454 19.806 Atomic orbital electron populations 1.21854 0.91523 1.02915 1.02558 1.19610 0.97147 0.94841 0.91339 1.21986 1.00478 0.95128 1.02777 1.21906 1.00247 1.00924 0.96477 1.20312 0.95012 0.94239 0.95400 1.21110 1.01289 0.94102 0.97295 1.21388 0.94983 1.00210 0.93630 1.18138 1.02524 0.93838 0.92834 1.21289 0.87901 0.89921 0.89513 1.83042 1.38660 1.55280 1.34046 1.19877 0.92864 0.93793 0.85561 1.20975 0.99817 0.98617 0.95772 1.21793 0.96550 0.94143 0.93090 1.21643 0.92873 0.99588 1.01306 1.21278 1.01331 0.93218 0.91308 1.20879 0.93836 1.07946 1.02082 1.20047 0.88648 0.78975 0.85173 1.90626 1.19868 1.58528 1.70630 1.20920 0.90982 1.05766 0.97698 1.84010 1.53239 1.30721 1.45579 1.21096 1.22215 0.91369 1.10078 0.93007 1.25994 0.98125 0.96879 1.00597 1.70165 1.37691 1.08300 1.40246 0.84945 0.77916 0.77604 0.77974 1.18374 1.19578 1.19504 1.21095 0.95268 0.93216 0.98215 1.21166 0.98937 1.01113 0.93759 0.92797 0.90545 0.91438 0.94014 0.90358 0.92189 0.91467 0.90230 0.94632 0.82290 0.83946 0.80680 0.78949 0.80950 0.85484 0.92755 0.88675 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.29 71.99 0.60 -1.54 16 2 C -0.03 -0.65 0.85 -52.93 -0.05 -0.69 16 3 C -0.15 -3.23 7.13 71.98 0.51 -2.72 16 4 C -0.14 -2.87 8.29 71.98 0.60 -2.27 16 5 C -0.05 -1.46 4.77 -19.79 -0.09 -1.55 16 6 C -0.12 -3.34 8.69 22.23 0.19 -3.14 16 7 C -0.08 -2.78 9.73 22.56 0.22 -2.56 16 8 C -0.07 -3.04 5.38 -20.11 -0.11 -3.15 16 9 C 0.16 7.22 6.49 24.57 0.16 7.38 16 10 O -0.21 -7.41 9.60 -7.94 -0.08 -7.49 16 11 C 0.12 4.02 6.77 22.98 0.16 4.18 16 12 C -0.13 -2.69 10.00 22.36 0.22 -2.47 16 13 C -0.04 -0.55 10.01 22.30 0.22 -0.33 16 14 C -0.14 -2.54 10.03 22.27 0.22 -2.32 16 15 C -0.05 -1.63 9.66 22.46 0.22 -1.41 16 16 C -0.25 -9.56 5.89 -20.00 -0.12 -9.67 16 17 C 0.38 20.00 6.99 25.68 0.18 20.18 16 18 O -0.51 -30.45 17.20 9.20 0.16 -30.29 16 19 C -0.11 -5.75 5.50 23.09 0.13 -5.63 16 20 O -0.22 -14.22 7.50 -7.52 -0.06 -14.28 16 21 C -0.37 -23.79 9.82 67.91 0.67 -23.13 16 22 H 0.05 3.30 7.75 -2.91 -0.02 3.27 16 23 C -0.02 -1.30 5.49 84.82 0.47 -0.84 16 24 N -0.92 -60.03 13.67 21.61 0.30 -59.74 16 25 Si 0.99 48.08 29.55 68.60 2.03 50.11 16 26 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 27 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 29 C -0.06 -2.61 8.66 22.56 0.20 -2.42 16 30 C -0.13 -4.83 8.96 22.23 0.20 -4.63 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.97 7.37 -2.38 -0.02 0.95 16 34 H 0.04 1.09 7.50 -2.39 -0.02 1.08 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.29 7.51 -2.39 -0.02 1.28 16 37 H 0.07 1.25 7.37 -2.38 -0.02 1.23 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.16 3.15 7.08 -2.91 -0.02 3.13 16 41 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 42 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 44 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.13 4.08 7.79 -2.91 -0.02 4.06 16 46 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 47 H 0.10 4.80 7.46 -2.91 -0.02 4.78 16 48 H 0.13 4.56 5.87 -2.91 -0.02 4.54 16 Total: -1.00 -89.73 403.17 8.12 -81.61 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.98 Total: 18.80 kcal Atomic # 6 Polarization: -43.52 SS G_CDS: 4.79 Total: -38.73 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.30 Total: -59.74 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: 0.03 Total: -52.06 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -89.73 8.12 -81.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001978411.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.513 kcal (2) G-P(sol) polarization free energy of solvation -89.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds