Wall clock time and date at job start Tue Mar 31 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47346 * 2 1 4 4 C 1.32260 * 120.24422 * 270.34740 * 3 2 1 5 5 O 1.21712 * 122.52339 * 0.03923 * 4 3 2 6 6 C 1.46772 * 114.95063 * 180.24684 * 4 3 2 7 7 C 1.35819 * 127.96783 * 179.77189 * 6 4 3 8 8 C 1.46757 * 119.99926 * 172.27990 * 7 6 4 9 9 C 1.40128 * 120.08799 * 337.85989 * 8 7 6 10 10 C 1.37628 * 119.98767 * 179.72082 * 9 8 7 11 11 C 1.39075 * 120.17134 * 0.52816 * 10 9 8 12 12 O 1.35612 * 119.91088 * 179.71815 * 11 10 9 13 13 C 1.34753 * 117.00184 * 6.05159 * 12 11 10 14 14 H 1.07999 * 119.99833 * 354.89327 * 13 12 11 15 15 C 1.38679 * 120.00084 * 174.89880 * 13 12 11 16 16 N 1.31541 * 120.00007 * 179.72043 * 15 13 12 17 17 Si 1.86796 * 120.00092 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46941 * 90.00089 * 17 15 13 19 19 H 1.48493 * 109.47498 * 210.00131 * 17 15 13 20 20 H 1.48502 * 109.47056 * 330.00434 * 17 15 13 21 21 C 1.39642 * 120.17365 * 359.45130 * 11 10 9 22 22 O 1.35949 * 119.99472 * 180.27173 * 21 11 10 23 23 C 1.42904 * 117.00054 * 180.02562 * 22 21 11 24 24 C 1.38046 * 120.00766 * 0.29126 * 21 11 10 25 25 S 1.77485 * 104.05993 * 359.50803 * 6 4 3 26 26 C 1.33792 * 120.24059 * 90.02560 * 3 2 1 27 27 S 1.71205 * 126.55004 * 0.02562 * 26 3 2 28 28 H 1.08996 * 109.47698 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46896 * 300.00505 * 1 2 3 30 30 H 1.09007 * 109.46741 * 59.99941 * 1 2 3 31 31 H 1.08999 * 109.46896 * 239.99495 * 2 1 3 32 32 H 1.09007 * 109.46741 * 120.00058 * 2 1 3 33 33 H 1.08006 * 119.99898 * 352.28583 * 7 6 4 34 34 H 1.07990 * 120.00717 * 359.97438 * 9 8 7 35 35 H 1.08006 * 119.91468 * 180.27448 * 10 9 8 36 36 H 0.96996 * 120.00177 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.46867 * 299.99784 * 23 22 21 38 38 H 1.08992 * 109.46997 * 59.99553 * 23 22 21 39 39 H 1.08997 * 109.47209 * 180.02562 * 23 22 21 40 40 H 1.08005 * 120.08354 * 179.97438 * 24 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2339 2.0115 -1.1426 5 8 2.0414 1.4888 -2.2247 6 6 2.7273 3.3872 -1.0072 7 6 3.0372 4.2648 -1.9963 8 6 3.3566 5.6588 -1.6668 9 6 2.9133 6.2146 -0.4593 10 6 3.2190 7.5203 -0.1498 11 6 3.9582 8.2945 -1.0378 12 8 4.2515 9.5823 -0.7300 13 6 3.9072 10.0109 0.5002 14 1 3.3476 9.3647 1.1603 15 6 4.2714 11.2819 0.9188 16 7 3.9306 11.7024 2.1177 17 14 5.2398 12.3994 -0.2225 18 1 4.2992 13.2079 -1.0391 19 1 6.0998 13.3037 0.5823 20 1 6.0902 11.5750 -1.1183 21 6 4.4039 7.7476 -2.2429 22 8 5.1309 8.5060 -3.1057 23 6 5.5536 7.8823 -4.3200 24 6 4.1060 6.4371 -2.5583 25 16 2.8181 3.6420 0.7469 26 6 2.2435 2.0162 1.1559 27 16 2.0198 1.3797 2.7293 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.0484 3.9369 -3.0253 34 1 2.3354 5.6173 0.2302 35 1 2.8804 7.9462 0.7832 36 1 4.1850 12.5915 2.4103 37 1 6.1803 7.0213 -4.0872 38 1 4.6800 7.5541 -4.8830 39 1 6.1233 8.5955 -4.9156 40 1 4.4497 6.0130 -3.4902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002057305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:39 Heat of formation + Delta-G solvation = -8.236419 kcal Electronic energy + Delta-G solvation = -27004.225001 eV Core-core repulsion = 23004.741100 eV Total energy + Delta-G solvation = -3999.483901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 365.059 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.63965 -40.19266 -38.20456 -37.45178 -36.97252 -33.81056 -32.91518 -32.17391 -30.16737 -29.25109 -27.26844 -26.99788 -26.12169 -25.01918 -23.02336 -22.12106 -21.17751 -20.07803 -19.06411 -18.43181 -18.09052 -17.87418 -16.69510 -16.52514 -15.97921 -15.93108 -15.60514 -15.36105 -14.94234 -14.69402 -14.25524 -14.20573 -14.15441 -13.65791 -13.53696 -13.35623 -12.72250 -12.65813 -12.54293 -12.42239 -12.19682 -12.10256 -11.93380 -11.60869 -11.50204 -11.35962 -11.13237 -11.12650 -11.02114 -10.55646 -10.41654 -10.38922 -9.92200 -9.32293 -9.11708 -8.50108 -8.02176 -7.92444 -7.28596 -6.90974 -4.43532 -0.54262 0.56401 0.65775 1.45505 1.64292 1.77660 1.92759 2.29450 2.63398 3.00423 3.03003 3.18829 3.53792 3.81886 3.89880 3.99753 4.20528 4.61238 4.66436 4.72069 4.80179 4.88480 5.01590 5.12299 5.16350 5.21853 5.24331 5.38035 5.39417 5.51788 5.54532 5.57728 5.76798 5.82534 5.86059 6.07480 6.24876 6.38920 6.52757 6.75890 6.99527 7.14418 7.18543 7.46749 7.70120 8.38590 8.98229 10.12214 Molecular weight = 365.06amu Principal moments of inertia in cm(-1) A = 0.013868 B = 0.002589 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.580415 B =10813.459761 C =12536.980368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.084 3.916 3 N -0.508 5.508 4 C 0.551 3.449 5 O -0.481 6.481 6 C -0.335 4.335 7 C 0.140 3.860 8 C -0.190 4.190 9 C -0.046 4.046 10 C -0.207 4.207 11 C 0.160 3.840 12 O -0.167 6.167 13 C -0.378 4.378 14 H 0.118 0.882 15 C 0.068 3.932 16 N -0.841 5.841 17 Si 0.907 3.093 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.250 1.250 21 C 0.057 3.943 22 O -0.307 6.307 23 C 0.028 3.972 24 C -0.124 4.124 25 S 0.149 5.851 26 C 0.252 3.748 27 S -0.431 6.431 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.149 0.851 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.290 0.710 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 -13.652 -8.985 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.039 4.039 3 N -0.227 5.227 4 C 0.340 3.660 5 O -0.358 6.358 6 C -0.452 4.452 7 C 0.114 3.886 8 C -0.192 4.192 9 C -0.067 4.067 10 C -0.227 4.227 11 C 0.101 3.899 12 O -0.067 6.067 13 C -0.452 4.452 14 H 0.135 0.865 15 C -0.141 4.141 16 N -0.474 5.474 17 Si 0.731 3.269 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.174 1.174 21 C 0.012 3.988 22 O -0.221 6.221 23 C -0.067 4.067 24 C -0.144 4.144 25 S 0.391 5.609 26 C -0.099 4.099 27 S -0.296 6.296 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.166 0.834 34 H 0.142 0.858 35 H 0.167 0.833 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.804 -12.806 -7.753 14.991 hybrid contribution -0.055 -0.497 -1.980 2.043 sum -0.859 -13.303 -9.733 16.506 Atomic orbital electron populations 1.22043 0.93505 1.03644 1.03085 1.22200 0.96649 0.79166 1.05934 1.45330 1.55294 1.16418 1.05639 1.17932 0.78118 0.86356 0.83599 1.90862 1.49670 1.69575 1.25656 1.23523 1.25360 0.98097 0.98257 1.21890 0.79855 0.89636 0.97213 1.18086 1.10487 0.92473 0.98125 1.21120 0.96820 0.94861 0.93949 1.20912 1.05098 0.94429 1.02233 1.18648 0.95170 0.84446 0.91588 1.83559 1.67739 1.21478 1.33881 1.21124 1.34778 1.01341 0.87940 0.86466 1.24646 0.96452 0.96743 0.96268 1.69618 1.40930 1.19972 1.16834 0.86116 0.80438 0.79966 0.80409 1.19244 1.20155 1.17380 1.17973 0.99586 0.90309 0.90892 1.86192 1.67870 1.38797 1.29235 1.22978 0.99265 0.99201 0.85304 1.20795 1.01550 0.92148 0.99872 1.86608 1.70978 1.05300 0.98007 1.29034 0.87002 0.98846 0.95057 1.92878 1.60239 1.74479 1.02014 0.90087 0.91280 0.92104 0.88227 0.87016 0.83408 0.85781 0.83286 0.89938 0.93087 0.93079 0.88723 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 10.23 37.16 0.38 -1.13 16 2 C 0.08 0.86 5.82 -4.05 -0.02 0.84 16 3 N -0.51 -6.44 2.48 -117.64 -0.29 -6.74 16 4 C 0.55 7.43 7.61 -13.92 -0.11 7.33 16 5 O -0.48 -7.13 16.86 5.18 0.09 -7.05 16 6 C -0.33 -4.36 6.33 -37.00 -0.23 -4.60 16 7 C 0.14 1.69 9.82 -37.01 -0.36 1.33 16 8 C -0.19 -2.67 5.79 -105.06 -0.61 -3.28 16 9 C -0.05 -0.73 8.59 -39.10 -0.34 -1.06 16 10 C -0.21 -3.79 9.14 -39.49 -0.36 -4.15 16 11 C 0.16 3.20 6.67 -38.75 -0.26 2.94 16 12 O -0.17 -3.87 8.35 -13.93 -0.12 -3.99 16 13 C -0.38 -9.26 9.94 30.90 0.31 -8.96 16 14 H 0.12 2.88 5.42 -52.49 -0.28 2.59 16 15 C 0.07 1.68 5.49 -17.51 -0.10 1.58 16 16 N -0.84 -21.42 13.96 55.48 0.77 -20.64 16 17 Si 0.91 19.24 28.62 -169.99 -4.86 14.38 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.25 -5.43 7.11 56.52 0.40 -5.02 16 21 C 0.06 1.00 6.70 -39.13 -0.26 0.74 16 22 O -0.31 -5.19 10.28 -34.20 -0.35 -5.54 16 23 C 0.03 0.31 9.81 101.05 0.99 1.30 16 24 C -0.12 -1.73 8.78 -38.97 -0.34 -2.08 16 25 S 0.15 2.00 19.07 -107.50 -2.05 -0.05 16 26 C 0.25 3.46 7.58 53.62 0.41 3.87 16 27 S -0.43 -6.53 29.73 -107.50 -3.20 -9.73 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.10 0.95 7.52 -51.93 -0.39 0.56 16 32 H 0.11 1.11 7.08 -51.92 -0.37 0.74 16 33 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.13 1.79 4.72 -30.02 -0.14 1.65 16 35 H 0.15 2.81 5.62 -52.48 -0.29 2.51 16 36 H 0.29 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 38 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.13 1.39 6.28 -52.48 -0.33 1.06 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -27.65 369.85 -9.19 -36.84 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -3.85 Total: 2.28 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -0.91 Total: -5.34 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.48 Total: -27.38 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.38 Total: -16.58 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.86 Total: 14.38 kcal Atomic # 16 Polarization: -4.53 SS G_CDS: -5.25 Total: -9.78 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.65 -9.19 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002057305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.608 kcal (2) G-P(sol) polarization free energy of solvation -27.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds