Wall clock time and date at job start Tue Mar 31 2020 07:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31370 * 1 3 3 Si 1.86795 * 120.00019 * 2 1 4 4 H 1.48494 * 109.47471 * 270.00031 * 3 2 1 5 5 H 1.48506 * 109.46971 * 29.99946 * 3 2 1 6 6 H 1.48495 * 109.47082 * 149.99911 * 3 2 1 7 7 C 1.39038 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00077 * 359.97438 * 7 2 1 9 9 N 1.36879 * 120.00103 * 180.02562 * 7 2 1 10 10 C 1.34783 * 120.00236 * 179.97438 * 9 7 2 11 11 O 1.21590 * 119.99914 * 359.97438 * 10 9 7 12 12 C 1.47755 * 119.99933 * 179.97438 * 10 9 7 13 13 C 1.39990 * 125.69200 * 180.30525 * 12 10 9 14 14 C 1.38699 * 107.56205 * 180.15782 * 13 12 10 15 15 N 1.33934 * 132.18423 * 179.89828 * 14 13 12 16 16 C 1.32316 * 120.71296 * 179.68374 * 15 14 13 17 17 C 1.47332 * 119.99671 * 180.02562 * 16 15 14 18 18 C 1.36241 * 125.95944 * 359.71750 * 17 16 15 19 19 C 1.40691 * 106.72619 * 179.85104 * 18 17 16 20 20 C 1.34907 * 107.06688 * 0.40999 * 19 18 17 21 21 O 1.34168 * 108.71660 * 359.74271 * 20 19 18 22 22 C 1.41667 * 119.99971 * 359.97438 * 16 15 14 23 23 C 1.35013 * 119.34874 * 359.97438 * 22 16 15 24 24 C 1.50698 * 120.34024 * 179.97438 * 23 22 16 25 25 F 1.39899 * 109.46819 * 4.99961 * 24 23 22 26 26 F 1.39888 * 109.46979 * 125.00189 * 24 23 22 27 27 F 1.39899 * 109.46968 * 245.00345 * 24 23 22 28 28 N 1.36955 * 119.31619 * 0.02562 * 23 22 16 29 29 N 1.32387 * 125.69470 * 0.02959 * 12 10 9 30 30 H 0.96992 * 120.00178 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99837 * 359.97438 * 9 7 2 32 32 H 1.08001 * 126.22004 * 0.08724 * 13 12 10 33 33 H 1.08003 * 126.63281 * 359.95843 * 18 17 16 34 34 H 1.08000 * 126.46198 * 180.16922 * 19 18 17 35 35 H 1.08003 * 125.63728 * 179.71459 * 20 19 18 36 36 H 1.08004 * 120.32917 * 179.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4952 2.0464 -1.4000 5 1 1.4451 2.6526 0.7001 6 1 3.5452 1.4401 0.7000 7 6 2.0089 -1.2041 -0.0005 8 1 1.4688 -2.1395 -0.0005 9 7 3.3777 -1.2041 0.0000 10 6 4.0516 -2.3714 0.0000 11 8 3.4437 -3.4244 0.0000 12 6 5.5292 -2.3713 0.0000 13 6 6.3459 -3.5083 -0.0061 14 6 7.6640 -3.0767 -0.0001 15 7 8.8276 -3.7399 -0.0004 16 6 9.9781 -3.0863 0.0000 17 6 11.2488 -3.8319 -0.0008 18 6 11.3808 -5.1879 0.0034 19 6 12.7611 -5.4604 -0.0028 20 6 13.3993 -4.2719 -0.0013 21 8 12.4835 -3.2914 -0.0002 22 6 9.9879 -1.6697 0.0001 23 6 8.8157 -0.9998 -0.0007 24 6 8.8001 0.5071 -0.0001 25 9 10.1092 0.9870 -0.1136 26 9 8.0398 0.9660 -1.0809 27 9 8.2368 0.9670 1.1951 28 7 7.6410 -1.7039 -0.0011 29 7 6.3016 -1.2962 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 3.8627 -0.3641 0.0004 32 1 6.0106 -4.5349 -0.0129 33 1 10.5806 -5.9132 0.0087 34 1 13.2225 -6.4369 -0.0042 35 1 14.4703 -4.1327 -0.0006 36 1 10.9239 -1.1308 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002084505.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:58 Heat of formation + Delta-G solvation = -30.193698 kcal Electronic energy + Delta-G solvation = -32015.402952 eV Core-core repulsion = 26861.780189 eV Total energy + Delta-G solvation = -5153.622763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.073 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -50.61704 -48.17029 -48.00350 -43.09541 -42.41597 -38.96334 -37.68189 -35.05136 -34.24297 -33.47535 -32.33052 -31.79608 -30.23099 -28.82999 -27.60904 -25.99216 -24.34171 -23.80099 -22.25972 -21.83712 -21.19437 -19.66300 -19.39960 -18.95425 -18.92689 -18.72802 -18.28721 -17.29722 -17.23451 -16.70900 -16.16110 -15.71805 -15.41628 -15.08652 -14.89446 -14.85460 -14.45341 -14.35859 -14.15694 -14.10414 -14.04268 -13.89901 -13.67414 -13.36969 -13.27307 -13.07003 -12.90443 -12.88352 -12.79863 -12.37356 -11.71735 -11.40807 -11.31659 -10.69222 -10.46067 -10.36277 -10.18438 -9.98669 -9.74117 -8.98044 -8.93829 -8.42767 -8.07497 -6.60334 -4.01863 -0.40211 0.20449 1.35292 1.44907 1.91681 1.95021 2.03357 2.19428 2.97170 2.99031 3.04154 3.05670 3.08118 3.38820 3.55323 3.84104 3.87831 3.93140 4.01015 4.16593 4.32340 4.38992 4.53265 4.58570 4.73563 5.02062 5.08788 5.16992 5.36275 5.40949 5.53992 5.63142 5.87115 5.93587 6.02311 6.34816 6.51629 7.08132 7.13397 7.32673 7.87477 8.33074 8.66229 9.14038 9.56401 10.49409 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.002920 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.332117 B = 9585.958085 C =11404.803931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.050 3.950 3 Si 0.874 3.126 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.296 4.296 8 H 0.130 0.870 9 N -0.543 5.543 10 C 0.497 3.503 11 O -0.563 6.563 12 C 0.111 3.889 13 C -0.176 4.176 14 C 0.247 3.753 15 N -0.415 5.415 16 C 0.270 3.730 17 C 0.003 3.997 18 C -0.125 4.125 19 C -0.221 4.221 20 C -0.008 4.008 21 O -0.165 6.165 22 C -0.154 4.154 23 C 0.102 3.898 24 C 0.523 3.477 25 F -0.161 7.161 26 F -0.154 7.154 27 F -0.156 7.156 28 N -0.305 5.305 29 N -0.279 5.279 30 H 0.281 0.719 31 H 0.381 0.619 32 H 0.180 0.820 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.212 0.788 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.305 -2.459 -0.020 29.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.158 4.158 3 Si 0.699 3.301 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.426 4.426 8 H 0.147 0.853 9 N -0.179 5.179 10 C 0.282 3.718 11 O -0.445 6.445 12 C -0.048 4.048 13 C -0.207 4.207 14 C 0.024 3.976 15 N -0.127 5.127 16 C 0.106 3.894 17 C -0.048 4.048 18 C -0.147 4.147 19 C -0.240 4.240 20 C -0.078 4.078 21 O -0.060 6.060 22 C -0.179 4.179 23 C -0.015 4.015 24 C 0.468 3.532 25 F -0.142 7.142 26 F -0.135 7.135 27 F -0.137 7.137 28 N -0.079 5.079 29 N -0.109 5.109 30 H 0.092 0.908 31 H 0.215 0.785 32 H 0.197 0.803 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.229 0.771 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 28.248 -2.316 -0.019 28.343 hybrid contribution 0.802 1.432 0.018 1.642 sum 29.051 -0.884 -0.001 29.064 Atomic orbital electron populations 1.69594 1.05851 1.28564 1.44754 1.25155 0.95616 0.98549 0.96474 0.86696 0.80381 0.83225 0.79794 1.18864 1.19453 1.18559 1.19638 0.78813 0.97250 1.46895 0.85265 1.42224 1.07843 1.06552 1.61237 1.16097 0.81854 0.85115 0.88744 1.90699 1.66186 1.30540 1.57082 1.22893 0.96437 0.90105 0.95368 1.21146 0.85674 1.01015 1.12821 1.20213 0.93752 0.79241 1.04432 1.67911 0.95194 1.36442 1.13147 1.18296 0.88930 0.88093 0.94095 1.19169 0.82062 0.90987 1.12539 1.22090 0.97553 0.94330 1.00725 1.21921 0.93567 0.99675 1.08823 1.24374 0.94651 0.85510 1.03220 1.84022 1.14023 1.36631 1.71360 1.21559 0.97584 0.95073 1.03687 1.20165 0.85086 0.91923 1.04288 1.17567 0.74521 0.85633 0.75492 1.93229 1.36054 1.89085 1.95854 1.93321 1.75644 1.89843 1.54701 1.93316 1.84893 1.89817 1.45690 1.46895 1.05386 1.06937 1.48700 1.78390 0.81657 1.20907 1.29956 0.90815 0.78481 0.80258 0.81880 0.82496 0.77111 0.80108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.62 13.95 55.50 0.77 -22.85 16 2 C 0.05 1.32 5.50 -17.45 -0.10 1.23 16 3 Si 0.87 19.32 27.74 -169.99 -4.71 14.61 16 4 H -0.26 -5.72 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.55 6.52 56.52 0.37 -5.18 16 7 C -0.30 -8.20 10.16 -15.00 -0.15 -8.35 16 8 H 0.13 3.98 7.38 -52.48 -0.39 3.59 16 9 N -0.54 -13.53 5.08 -11.86 -0.06 -13.59 16 10 C 0.50 12.08 7.78 -12.37 -0.10 11.98 16 11 O -0.56 -15.24 16.45 5.29 0.09 -15.15 16 12 C 0.11 2.30 7.05 -83.08 -0.59 1.71 16 13 C -0.18 -3.15 10.66 -38.76 -0.41 -3.57 16 14 C 0.25 4.04 7.90 -155.49 -1.23 2.81 16 15 N -0.42 -5.81 10.18 -8.92 -0.09 -5.90 16 16 C 0.27 3.14 6.78 -82.65 -0.56 2.58 16 17 C 0.00 0.02 7.04 -36.60 -0.26 -0.23 16 18 C -0.13 -1.07 10.59 -39.37 -0.42 -1.49 16 19 C -0.22 -1.34 10.88 -39.84 -0.43 -1.77 16 20 C -0.01 -0.04 12.08 29.55 0.36 0.32 16 21 O -0.17 -1.31 10.43 4.76 0.05 -1.26 16 22 C -0.15 -1.63 9.10 -39.42 -0.36 -1.99 16 23 C 0.10 1.36 6.29 -81.45 -0.51 0.85 16 24 C 0.52 6.60 3.38 36.00 0.12 6.72 16 25 F -0.16 -1.59 15.99 2.25 0.04 -1.56 16 26 F -0.15 -2.19 17.30 2.25 0.04 -2.16 16 27 F -0.16 -2.17 17.30 2.25 0.04 -2.13 16 28 N -0.30 -5.07 3.90 -8.53 -0.03 -5.10 16 29 N -0.28 -5.43 12.19 33.22 0.41 -5.03 16 30 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.38 8.83 5.44 -40.82 -0.22 8.61 16 32 H 0.18 2.96 8.06 -52.49 -0.42 2.53 16 33 H 0.16 1.35 8.06 -52.48 -0.42 0.92 16 34 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.21 0.20 8.06 -52.48 -0.42 -0.22 16 36 H 0.18 1.33 7.04 -52.48 -0.37 0.96 16 LS Contribution 346.87 15.07 5.23 5.23 Total: -1.00 -31.93 346.87 -4.71 -36.64 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -1.84 Total: 7.44 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: -4.63 Total: 10.80 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 1.00 Total: -52.46 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.14 Total: -16.41 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.11 Total: -5.84 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.93 -4.71 -36.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002084505.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.447 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds