Wall clock time and date at job start Tue Mar 31 2020 07:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38238 * 120.00888 * 2 1 4 4 C 1.38218 * 120.01172 * 179.75150 * 3 2 1 5 5 S 1.76207 * 119.98621 * 179.97438 * 4 3 2 6 6 O 1.42099 * 106.40074 * 94.48178 * 5 4 3 7 7 O 1.42096 * 106.40425 * 227.40372 * 5 4 3 8 8 O 1.52197 * 107.21680 * 340.94464 * 5 4 3 9 9 C 1.35682 * 114.00067 * 282.42037 * 8 5 4 10 10 C 1.39313 * 119.81548 * 276.98923 * 9 8 5 11 11 C 1.36441 * 120.18006 * 179.75866 * 10 9 8 12 12 C 1.40829 * 119.81299 * 0.51247 * 11 10 9 13 13 C 1.41209 * 120.17734 * 179.71940 * 12 11 10 14 14 H 1.08010 * 120.00211 * 163.19367 * 13 12 11 15 15 C 1.39889 * 120.00179 * 343.19501 * 13 12 11 16 16 N 1.30884 * 119.99955 * 327.76790 * 15 13 12 17 17 Si 1.86803 * 120.00100 * 147.76875 * 15 13 12 18 18 H 1.48507 * 109.47096 * 94.99542 * 17 15 13 19 19 H 1.48502 * 109.46886 * 214.98942 * 17 15 13 20 20 H 1.48494 * 109.47191 * 334.99476 * 17 15 13 21 21 C 1.40832 * 119.63969 * 359.74143 * 12 11 10 22 22 C 1.36431 * 119.81676 * 359.97438 * 21 12 11 23 23 C 1.38263 * 120.02950 * 359.97438 * 4 3 2 24 24 C 1.50704 * 119.99154 * 180.02562 * 23 4 3 25 25 C 1.38192 * 120.01056 * 359.97438 * 23 4 3 26 26 C 1.38337 * 120.00465 * 179.72487 * 2 1 3 27 27 Cl 1.73595 * 120.01359 * 0.25348 * 26 2 1 28 28 H 1.08997 * 109.47014 * 89.99845 * 1 2 3 29 29 H 1.08994 * 109.47136 * 210.00192 * 1 2 3 30 30 H 1.09008 * 109.46842 * 329.99863 * 1 2 3 31 31 H 1.07993 * 119.99468 * 359.72270 * 3 2 1 32 32 H 1.08000 * 119.90693 * 0.02562 * 10 9 8 33 33 H 1.08000 * 120.08818 * 180.25068 * 11 10 9 34 34 H 0.97005 * 119.99999 * 180.02562 * 16 15 13 35 35 H 1.08006 * 120.09051 * 179.97438 * 21 12 11 36 36 H 1.08003 * 119.90888 * 179.97438 * 22 21 12 37 37 H 1.09001 * 109.47213 * 83.22880 * 24 23 4 38 38 H 1.09006 * 109.46538 * 203.22555 * 24 23 4 39 39 H 1.08997 * 109.47578 * 323.22177 * 24 23 4 40 40 H 1.08000 * 120.00080 * 179.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1971 0.0052 5 16 4.4611 2.7234 0.0045 6 8 4.7488 3.0212 1.3638 7 8 5.4645 2.6073 -0.9949 8 8 3.4978 3.7990 -0.4766 9 6 3.3033 3.8052 -1.8194 10 6 4.2133 4.4580 -2.6480 11 6 4.0276 4.4647 -3.9997 12 6 2.9066 3.8185 -4.5557 13 6 2.7038 3.8258 -5.9532 14 1 2.0192 3.1219 -6.4032 15 6 3.3896 4.7445 -6.7548 16 7 3.6891 5.9284 -6.2837 17 14 3.8778 4.2818 -8.4975 18 1 2.8423 4.7644 -9.4463 19 1 5.1829 4.9080 -8.8287 20 1 3.9961 2.8053 -8.6029 21 6 1.9888 3.1655 -3.7104 22 6 2.1921 3.1632 -2.3613 23 6 4.2725 0.0001 0.0109 24 6 5.7795 0.0012 0.0172 25 6 3.5824 -1.1972 0.0120 26 6 2.1987 -1.1980 0.0058 27 17 1.3313 -2.7016 0.0063 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.6584 2.1323 -0.0045 32 1 5.0703 4.9565 -2.2196 33 1 4.7361 4.9678 -4.6411 34 1 4.1642 6.5656 -6.8397 35 1 1.1264 2.6680 -4.1290 36 1 1.4890 2.6632 -1.7116 37 1 6.1385 0.1251 1.0389 38 1 6.1451 -0.9439 -0.3844 39 1 6.1449 0.8231 -0.5985 40 1 4.1231 -2.1321 0.0161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002163133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:30 Heat of formation + Delta-G solvation = -76.678716 kcal Electronic energy + Delta-G solvation = -28575.847705 eV Core-core repulsion = 24473.633555 eV Total energy + Delta-G solvation = -4102.214150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.053 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.92766 -39.69658 -37.06231 -36.77296 -36.65692 -35.52917 -33.95601 -33.93710 -31.25216 -29.95993 -29.63556 -29.44900 -25.57315 -25.08554 -23.49147 -22.24792 -21.71462 -21.18640 -19.54271 -17.87630 -17.77771 -17.06768 -16.88753 -16.36739 -16.05563 -15.59727 -14.93095 -14.62557 -14.46000 -14.27012 -14.07253 -13.48755 -13.24233 -13.07207 -13.01424 -12.78382 -12.53056 -12.43932 -12.38762 -12.30573 -12.17337 -12.11581 -11.69551 -11.56077 -11.45434 -11.41249 -11.31891 -11.14256 -11.09236 -10.94826 -10.75150 -10.36752 -10.28683 -9.69910 -9.31068 -9.13239 -8.67814 -7.93506 -7.83798 -7.34773 -4.72984 0.64628 0.84206 1.11726 1.86602 2.37216 2.78609 2.82240 2.87755 2.96120 3.14120 3.23789 3.59507 3.98986 4.09417 4.46954 4.55046 4.85592 4.97661 5.06937 5.20825 5.27878 5.31545 5.49163 5.51202 5.59765 5.63275 5.78784 5.83803 5.87684 5.96891 6.02910 6.10489 6.19762 6.25094 6.57561 6.62276 6.64628 6.80675 6.85684 7.17221 7.47608 7.61887 7.64190 7.80066 8.15988 8.39878 8.52963 9.56989 Molecular weight = 366.05amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.003417 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.247236 B = 8192.994091 C = 9434.700301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C -0.015 4.015 4 C -0.666 4.666 5 S 2.637 3.363 6 O -0.961 6.961 7 O -0.954 6.954 8 O -0.629 6.629 9 C -0.121 4.121 10 C -0.049 4.049 11 C -0.176 4.176 12 C 0.119 3.881 13 C -0.423 4.423 14 H 0.092 0.908 15 C 0.080 3.920 16 N -0.740 5.740 17 Si 0.909 3.091 18 H -0.265 1.265 19 H -0.269 1.269 20 H -0.253 1.253 21 C -0.220 4.220 22 C -0.064 4.064 23 C 0.026 3.974 24 C -0.176 4.176 25 C -0.130 4.130 26 C 0.011 3.989 27 Cl -0.064 7.064 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.293 0.707 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.296 -9.751 6.132 11.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.103 4.103 3 C -0.034 4.034 4 C -0.747 4.747 5 S 2.733 3.267 6 O -0.960 6.960 7 O -0.952 6.952 8 O -0.589 6.589 9 C -0.167 4.167 10 C -0.070 4.070 11 C -0.196 4.196 12 C 0.115 3.885 13 C -0.450 4.450 14 H 0.110 0.890 15 C -0.147 4.147 16 N -0.360 5.360 17 Si 0.731 3.269 18 H -0.190 1.190 19 H -0.193 1.193 20 H -0.176 1.176 21 C -0.240 4.240 22 C -0.085 4.085 23 C 0.025 3.975 24 C -0.232 4.232 25 C -0.149 4.149 26 C -0.016 4.016 27 Cl -0.035 7.035 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.121 0.879 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.834 -9.157 6.475 11.364 hybrid contribution -0.253 -1.014 -0.579 1.195 sum -2.087 -10.172 5.896 11.941 Atomic orbital electron populations 1.20890 0.89689 1.03595 1.03426 1.19787 0.97062 0.91248 1.02162 1.20792 0.91904 0.98231 0.92459 1.31318 1.06477 1.21697 1.15238 1.04853 0.74834 0.73019 0.73986 1.93547 1.83382 1.82913 1.36116 1.93517 1.57697 1.85164 1.58861 1.85682 1.76307 1.64747 1.32115 1.17490 1.04943 1.20277 0.74036 1.20426 0.96207 0.96216 0.94111 1.20776 0.99720 1.06439 0.92705 1.17737 0.89591 0.88174 0.92981 1.19878 1.20112 1.13255 0.91722 0.88968 1.26199 0.92999 0.93367 1.02116 1.69912 1.23688 1.03333 1.39100 0.86269 0.79196 0.81169 0.80296 1.18969 1.19336 1.17615 1.20482 1.01648 1.10145 0.91755 1.20393 0.94865 0.97452 0.95767 1.19342 0.96105 0.90818 0.91276 1.21673 0.89986 1.07061 1.04488 1.20982 0.91877 0.98691 1.03348 1.20981 0.92430 0.86710 1.01467 1.98359 1.76841 1.31782 1.96551 0.90169 0.90793 0.90718 0.83653 0.87888 0.86032 0.89554 0.87571 0.87948 0.89710 0.89695 0.86689 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.62 36.00 0.35 -0.93 16 2 C -0.10 -1.39 5.88 -104.59 -0.62 -2.01 16 3 C -0.02 -0.23 7.35 -39.59 -0.29 -0.53 16 4 C -0.67 -11.45 5.70 -39.58 -0.23 -11.67 16 5 S 2.64 51.42 4.70 -107.50 -0.51 50.92 16 6 O -0.96 -20.18 18.01 -66.81 -1.20 -21.38 16 7 O -0.95 -19.98 13.21 -66.81 -0.88 -20.86 16 8 O -0.63 -12.87 9.36 -50.88 -0.48 -13.35 16 9 C -0.12 -2.66 4.93 -38.78 -0.19 -2.86 16 10 C -0.05 -1.13 8.65 -39.83 -0.34 -1.48 16 11 C -0.18 -4.24 8.76 -39.25 -0.34 -4.58 16 12 C 0.12 2.84 5.63 -106.81 -0.60 2.24 16 13 C -0.42 -9.72 8.96 -37.84 -0.34 -10.06 16 14 H 0.09 1.99 8.01 -52.48 -0.42 1.57 16 15 C 0.08 1.72 4.85 -17.34 -0.08 1.64 16 16 N -0.74 -16.52 11.41 55.54 0.63 -15.89 16 17 Si 0.91 15.97 29.66 -169.99 -5.04 10.93 16 18 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 19 H -0.27 -4.66 7.11 56.52 0.40 -4.25 16 20 H -0.25 -4.49 7.11 56.52 0.40 -4.08 16 21 C -0.22 -4.79 9.74 -39.25 -0.38 -5.17 16 22 C -0.06 -1.33 9.03 -39.83 -0.36 -1.69 16 23 C 0.03 0.40 5.87 -104.63 -0.61 -0.21 16 24 C -0.18 -2.41 9.42 36.01 0.34 -2.07 16 25 C -0.13 -1.76 9.46 -39.55 -0.37 -2.13 16 26 C 0.01 0.15 6.31 -39.50 -0.25 -0.10 16 27 Cl -0.06 -0.73 27.29 -51.86 -1.42 -2.14 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.71 6.90 -51.93 -0.36 0.35 16 30 H 0.07 0.70 8.09 -51.92 -0.42 0.28 16 31 H 0.15 2.08 5.97 -52.49 -0.31 1.76 16 32 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.12 2.93 6.16 -52.49 -0.32 2.61 16 34 H 0.29 5.80 8.30 -40.82 -0.34 5.46 16 35 H 0.11 2.09 8.06 -52.48 -0.42 1.66 16 36 H 0.10 1.78 5.27 -52.48 -0.28 1.50 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 39 H 0.11 1.80 5.07 -51.93 -0.26 1.54 16 40 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -27.50 357.40 -11.88 -39.38 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -4.04 Total: 8.62 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: -4.33 Total: -41.61 kcal Atomic # 7 Polarization: -16.52 SS G_CDS: 0.63 Total: -15.89 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -2.56 Total: -55.60 kcal Atomic # 14 Polarization: 15.97 SS G_CDS: -5.04 Total: 10.93 kcal Atomic # 16 Polarization: 51.42 SS G_CDS: -0.51 Total: 50.92 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.42 Total: -2.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.50 -11.88 -39.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002163133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.298 kcal (2) G-P(sol) polarization free energy of solvation -27.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds