Wall clock time and date at job start Tue Mar 31 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47431 * 2 1 4 4 C 1.38771 * 120.16097 * 91.12950 * 3 2 1 5 5 C 1.50705 * 119.06410 * 359.69973 * 4 3 2 6 6 N 1.31291 * 121.86990 * 179.97438 * 4 3 2 7 7 C 1.33820 * 121.69078 * 359.97438 * 6 4 3 8 8 C 1.40631 * 120.98590 * 179.97438 * 7 6 4 9 9 Br 1.89097 * 120.13168 * 0.02562 * 8 7 6 10 10 C 1.36222 * 119.73880 * 180.02562 * 8 7 6 11 11 C 1.39246 * 121.01654 * 0.02562 * 10 8 7 12 12 C 1.36276 * 120.81818 * 0.02562 * 11 10 8 13 13 C 1.40141 * 119.64759 * 359.97438 * 12 11 10 14 14 C 1.38695 * 120.15966 * 271.10516 * 3 2 1 15 15 S 1.76208 * 121.06165 * 0.02562 * 14 3 2 16 16 C 1.81002 * 99.99840 * 267.17701 * 15 14 3 17 17 C 1.50699 * 109.47110 * 184.78372 * 16 15 14 18 18 H 1.08007 * 119.99701 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00088 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00237 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99988 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46952 * 90.00430 * 21 19 17 23 23 H 1.48495 * 109.47210 * 210.00538 * 21 19 17 24 24 H 1.48497 * 109.47335 * 330.00417 * 21 19 17 25 25 H 1.08999 * 109.46873 * 296.09681 * 1 2 3 26 26 H 1.09001 * 109.46672 * 56.09772 * 1 2 3 27 27 H 1.09000 * 109.47164 * 176.09683 * 1 2 3 28 28 H 1.09000 * 109.47028 * 239.99591 * 2 1 3 29 29 H 1.09004 * 109.46940 * 120.00645 * 2 1 3 30 30 H 1.09000 * 109.47190 * 90.00042 * 5 4 3 31 31 H 1.09000 * 109.46832 * 209.99978 * 5 4 3 32 32 H 1.08995 * 109.46916 * 329.99919 * 5 4 3 33 33 H 1.08003 * 119.49154 * 179.97438 * 10 8 7 34 34 H 1.08000 * 119.59294 * 180.02562 * 11 10 8 35 35 H 1.07993 * 120.17181 * 180.02562 * 12 11 10 36 36 H 1.08993 * 109.47155 * 304.78558 * 16 15 14 37 37 H 1.09003 * 109.46663 * 64.78529 * 16 15 14 38 38 H 0.97001 * 120.00478 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2871 2.0702 1.1996 5 6 2.0476 1.3370 2.4943 6 7 2.7258 3.3070 1.2387 7 6 2.9517 4.0085 0.1217 8 6 3.4212 5.3328 0.1810 9 35 3.7448 6.1513 1.8546 10 6 3.6419 6.0237 -0.9721 11 6 3.4094 5.4393 -2.2144 12 6 2.9534 4.1586 -2.3092 13 6 2.7158 3.4193 -1.1426 14 6 2.2429 2.0854 -1.1990 15 16 1.9314 1.2958 -2.7431 16 6 3.5787 0.6337 -3.0955 17 6 3.5826 -0.0029 -4.4614 18 1 2.6817 -0.0082 -5.0573 19 6 4.7357 -0.5795 -4.9500 20 7 4.7392 -1.1346 -6.1422 21 14 6.2934 -0.5710 -3.9190 22 1 6.3357 -1.7928 -3.0760 23 1 7.4787 -0.5454 -4.8133 24 1 6.3043 0.6318 -3.0483 25 1 -0.3633 0.4521 0.9229 26 1 -0.3633 0.5732 -0.8530 27 1 -0.3633 -1.0253 -0.0700 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 2.9570 0.8133 2.7889 31 1 1.7718 2.0509 3.2704 32 1 1.2408 0.6166 2.3600 33 1 4.0021 7.0407 -0.9220 34 1 3.5926 6.0081 -3.1141 35 1 2.7770 3.7155 -3.2781 36 1 4.3086 1.4427 -3.0696 37 1 3.8379 -0.1137 -2.3455 38 1 5.5506 -1.5400 -6.4861 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002339233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:20 Heat of formation + Delta-G solvation = 39.794823 kcal Electronic energy + Delta-G solvation = -21979.412045 eV Core-core repulsion = 18765.539543 eV Total energy + Delta-G solvation = -3213.872502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 365.014 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.89826 -37.82568 -34.67165 -33.25200 -33.15055 -31.84958 -30.19861 -29.50279 -28.76924 -27.79406 -24.61847 -23.15403 -22.53827 -21.83412 -21.54406 -18.18879 -17.23193 -17.03718 -16.55970 -15.44026 -15.04527 -14.96355 -14.33852 -14.17758 -13.90664 -13.77533 -13.41105 -13.26735 -13.09188 -12.79281 -12.57320 -12.47364 -12.20491 -11.99709 -11.59411 -11.54460 -11.22273 -11.19576 -10.92227 -10.87193 -10.79415 -10.54656 -10.21320 -10.06535 -9.70496 -9.44164 -9.14187 -8.83350 -8.60327 -8.05569 -7.08421 -6.30548 -4.34673 0.13867 0.77513 1.59864 1.69139 2.25535 2.78568 3.12862 3.20740 3.23552 3.42512 4.00280 4.04615 4.20475 4.52857 4.70330 4.79671 4.93568 5.00844 5.08308 5.17907 5.20311 5.33107 5.44468 5.51231 5.52999 5.60875 5.73972 5.80042 5.88183 5.91266 6.04892 6.12515 6.32279 6.33864 6.42134 6.46541 6.49691 6.52938 6.72559 7.25743 7.85276 8.14704 8.69619 9.24842 10.80930 Molecular weight = 365.01amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003824 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.189811 B = 7320.943260 C = 8495.383526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 C -0.091 4.091 4 C 0.166 3.834 5 C -0.108 4.108 6 N -0.463 5.463 7 C 0.143 3.857 8 C -0.076 4.076 9 Br -0.038 7.038 10 C -0.067 4.067 11 C -0.125 4.125 12 C -0.066 4.066 13 C -0.074 4.074 14 C -0.049 4.049 15 S -0.132 6.132 16 C 0.036 3.964 17 C -0.520 4.520 18 H 0.086 0.914 19 C 0.086 3.914 20 N -0.886 5.886 21 Si 0.872 3.128 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.266 1.266 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.154 0.846 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 11.613 16.138 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.096 4.096 4 C 0.012 3.988 5 C -0.165 4.165 6 N -0.172 5.172 7 C 0.018 3.982 8 C -0.157 4.157 9 Br 0.048 6.952 10 C -0.089 4.089 11 C -0.144 4.144 12 C -0.085 4.085 13 C -0.079 4.079 14 C -0.168 4.168 15 S 0.102 5.898 16 C -0.111 4.111 17 C -0.559 4.559 18 H 0.104 0.896 19 C -0.119 4.119 20 N -0.523 5.523 21 Si 0.698 3.302 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.191 1.191 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.818 12.220 16.739 21.278 hybrid contribution 1.917 -0.401 -0.033 1.959 sum -2.901 11.819 16.707 20.669 Atomic orbital electron populations 1.21680 0.93999 1.02211 1.01833 1.20722 0.96836 0.91045 1.04288 1.21128 0.98290 0.97973 0.92221 1.21322 0.92613 0.89903 0.94972 1.20857 1.02901 0.99838 0.92933 1.67930 1.12565 1.07229 1.29449 1.18296 0.98304 0.93051 0.88553 1.21302 1.07741 0.94199 0.92441 1.96637 1.94664 1.78932 1.25002 1.20922 0.97014 0.99959 0.90975 1.20937 1.00517 0.95632 0.97285 1.21571 0.94262 0.93715 0.98937 1.18900 1.00663 0.94373 0.93979 1.22812 0.99347 0.95032 0.99621 1.85637 1.21493 1.67052 1.15598 1.21644 0.89181 0.98571 1.01751 1.20403 0.99478 1.37798 0.98220 0.89620 1.24793 0.98251 0.94106 0.94784 1.69845 1.28912 1.36732 1.16784 0.86894 0.83276 0.79310 0.80694 1.19688 1.20571 1.19089 0.93180 0.91951 0.91872 0.88605 0.90639 0.90047 0.90233 0.89947 0.84543 0.84423 0.82864 0.94422 0.94753 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.78 37.16 0.36 -1.27 16 2 C -0.09 -1.21 4.93 -27.88 -0.14 -1.35 16 3 C -0.09 -1.42 5.17 -104.26 -0.54 -1.96 16 4 C 0.17 2.43 6.77 -82.62 -0.56 1.87 16 5 C -0.11 -1.14 9.31 36.01 0.34 -0.80 16 6 N -0.46 -7.51 9.58 -7.33 -0.07 -7.58 16 7 C 0.14 2.38 6.60 -84.87 -0.56 1.82 16 8 C -0.08 -1.12 6.23 -39.40 -0.25 -1.36 16 9 Br -0.04 -0.49 33.17 -68.01 -2.26 -2.75 16 10 C -0.07 -0.84 9.67 -39.93 -0.39 -1.22 16 11 C -0.12 -1.59 9.96 -39.91 -0.40 -1.99 16 12 C -0.07 -1.02 9.42 -39.57 -0.37 -1.40 16 13 C -0.07 -1.27 5.75 -106.66 -0.61 -1.88 16 14 C -0.05 -0.87 5.60 -38.12 -0.21 -1.08 16 15 S -0.13 -2.57 18.68 -107.50 -2.01 -4.58 16 16 C 0.04 0.82 4.52 36.01 0.16 0.98 16 17 C -0.52 -13.95 9.68 -34.44 -0.33 -14.28 16 18 H 0.09 2.50 7.95 -52.48 -0.42 2.08 16 19 C 0.09 2.36 5.47 -17.82 -0.10 2.26 16 20 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 21 Si 0.87 20.45 27.47 -169.99 -4.67 15.79 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 25 H 0.05 0.51 7.39 -51.93 -0.38 0.13 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.10 1.48 6.92 -51.93 -0.36 1.12 16 29 H 0.08 0.83 6.61 -51.93 -0.34 0.49 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.72 5.78 -51.93 -0.30 0.42 16 33 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.15 2.45 6.95 -52.49 -0.36 2.09 16 36 H 0.04 0.88 7.20 -51.92 -0.37 0.50 16 37 H 0.03 0.78 7.57 -51.91 -0.39 0.38 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -29.60 345.84 -11.25 -40.86 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.64 Total: -0.37 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -3.59 Total: -21.66 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.70 Total: -32.50 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.79 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.01 Total: -4.58 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -2.26 Total: -2.75 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.60 -11.25 -40.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002339233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.651 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds