Wall clock time and date at job start Tue Mar 31 2020 07:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 120.00286 * 2 1 4 4 H 1.48503 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46922 * 299.98968 * 3 2 1 6 6 H 1.48496 * 109.47385 * 59.99332 * 3 2 1 7 7 C 1.38702 * 119.99479 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99600 * 180.02562 * 7 2 1 9 9 O 1.34810 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.35613 * 116.99782 * 185.05436 * 9 7 2 11 11 C 1.39474 * 119.70787 * 174.67895 * 10 9 7 12 12 C 1.36516 * 120.29926 * 180.30210 * 11 10 9 13 13 C 1.39607 * 119.76911 * 359.72405 * 12 11 10 14 14 C 1.40596 * 120.40913 * 0.02562 * 13 12 11 15 15 C 1.38581 * 119.71227 * 354.42560 * 10 9 7 16 16 O 1.34770 * 120.30758 * 180.02562 * 14 13 12 17 17 C 1.33569 * 123.29250 * 359.97438 * 16 14 13 18 18 C 1.35812 * 122.55304 * 0.02562 * 17 16 14 19 19 C 1.48328 * 120.63676 * 179.97438 * 18 17 16 20 20 C 1.39378 * 120.07312 * 130.00360 * 19 18 17 21 21 C 1.37966 * 119.98043 * 180.02562 * 20 19 18 22 22 C 1.38812 * 120.23756 * 359.93822 * 21 20 19 23 23 C 1.39079 * 120.02046 * 359.97249 * 22 21 20 24 24 C 1.38502 * 119.93890 * 359.86205 * 23 22 21 25 25 O 1.36134 * 120.77679 * 180.20998 * 23 22 21 26 26 C 1.43172 * 116.71123 * 342.72051 * 25 23 22 27 27 C 1.53475 * 108.22514 * 46.27218 * 26 25 23 28 28 O 1.36171 * 119.25385 * 179.83061 * 22 21 20 29 29 C 1.47283 * 118.71715 * 359.97438 * 18 17 16 30 30 O 1.21903 * 121.61287 * 179.97438 * 29 18 17 31 31 H 0.97006 * 119.99509 * 0.02562 * 1 2 3 32 32 H 1.07998 * 119.84693 * 0.03152 * 11 10 9 33 33 H 1.07995 * 120.11657 * 179.70491 * 12 11 10 34 34 H 1.08001 * 120.08993 * 359.97348 * 15 10 9 35 35 H 1.08000 * 118.72007 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.01435 * 359.97438 * 20 19 18 37 37 H 1.08002 * 119.88017 * 179.97438 * 21 20 19 38 38 H 1.07999 * 120.01721 * 180.16809 * 24 23 22 39 39 H 1.08998 * 109.71376 * 286.58947 * 26 25 23 40 40 H 1.09000 * 109.71238 * 165.94989 * 26 25 23 41 41 H 1.08993 * 109.70833 * 180.52107 * 27 26 25 42 42 H 1.09004 * 109.74214 * 59.91236 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8908 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0086 -1.2013 0.0005 8 1 3.0886 -1.2013 0.0010 9 8 1.3345 -2.3687 0.0005 10 6 2.0690 -3.5037 0.1075 11 6 1.4249 -4.7352 0.2255 12 6 2.1524 -5.8847 0.3401 13 6 3.5472 -5.8259 0.3333 14 6 4.2068 -4.5904 0.2096 15 6 3.4527 -3.4303 0.0934 16 8 5.5534 -4.5361 0.2027 17 6 6.3313 -5.6165 0.3099 18 6 5.8264 -6.8710 0.4353 19 6 6.7301 -8.0415 0.5507 20 6 6.5419 -8.9712 1.5719 21 6 7.3839 -10.0590 1.6778 22 6 8.4190 -10.2327 0.7694 23 6 8.6103 -9.3091 -0.2526 24 6 7.7652 -8.2175 -0.3648 25 8 9.6178 -9.4667 -1.1544 26 6 10.6691 -10.3691 -0.7936 27 6 10.0322 -11.6543 -0.2475 28 8 9.2403 -11.3117 0.8948 29 6 4.3642 -7.0467 0.4544 30 8 3.8544 -8.1486 0.5642 31 1 -0.4850 0.8401 -0.0004 32 1 0.3458 -4.7791 0.2305 33 1 1.6506 -6.8362 0.4361 34 1 3.9432 -2.4729 -0.0028 35 1 7.4035 -5.4875 0.2962 36 1 5.7376 -8.8398 2.2807 37 1 7.2368 -10.7781 2.4700 38 1 7.9109 -7.5009 -1.1596 39 1 11.2964 -9.9150 -0.0266 40 1 11.2715 -10.6018 -1.6718 41 1 10.8132 -12.3564 0.0439 42 1 9.3991 -12.1050 -1.0119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002407695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:30 Heat of formation + Delta-G solvation = -90.973993 kcal Electronic energy + Delta-G solvation = -30949.378580 eV Core-core repulsion = 26406.224519 eV Total energy + Delta-G solvation = -4543.154061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.103 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.50323 -41.21630 -38.98194 -38.48435 -37.62147 -37.48039 -36.05574 -33.20873 -32.62460 -31.25240 -30.56254 -30.13472 -29.36530 -28.05025 -25.93112 -25.08575 -24.22646 -23.13101 -22.82188 -21.68764 -20.91264 -19.20913 -18.92471 -18.13594 -17.95613 -17.52501 -17.31292 -16.65078 -16.08155 -15.89764 -15.65326 -15.29523 -15.19800 -14.66652 -14.65620 -14.52283 -14.34264 -14.21160 -14.03730 -13.90178 -13.50815 -13.47255 -13.37289 -12.95611 -12.80191 -12.33601 -12.05535 -11.92878 -11.81938 -11.50113 -11.39233 -11.36121 -10.98868 -10.88842 -10.72350 -10.60182 -9.78357 -9.46500 -9.27006 -9.11457 -8.73683 -8.28361 -7.77419 -7.64074 -6.78096 -4.34712 0.77995 1.18819 1.23908 1.54375 2.12024 2.68409 2.75787 2.93725 2.96075 2.99051 3.05494 3.31996 3.59139 3.72872 3.89458 4.31776 4.35708 4.39380 4.44556 4.53162 4.60682 4.77825 4.84225 4.87966 4.99127 5.07325 5.12278 5.16412 5.24270 5.37718 5.53338 5.65823 5.71802 5.85220 5.95913 5.97850 6.07655 6.17605 6.37524 6.47264 6.47985 6.53658 6.64867 6.78161 6.95025 7.08651 7.18525 7.22712 7.66060 7.70294 8.07254 8.65799 9.27600 10.37436 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.001897 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.346272 B =14755.765496 C =15682.681761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.044 3.956 3 Si 0.947 3.053 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.395 4.395 8 H 0.102 0.898 9 O -0.148 6.148 10 C 0.195 3.805 11 C -0.200 4.200 12 C 0.004 3.996 13 C -0.312 4.312 14 C 0.189 3.811 15 C -0.267 4.267 16 O -0.224 6.224 17 C 0.138 3.862 18 C -0.262 4.262 19 C -0.004 4.004 20 C -0.083 4.083 21 C -0.111 4.111 22 C 0.045 3.955 23 C 0.049 3.951 24 C -0.110 4.110 25 O -0.308 6.308 26 C 0.021 3.979 27 C 0.020 3.980 28 O -0.309 6.309 29 C 0.437 3.563 30 O -0.487 6.487 31 H 0.276 0.724 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.146 0.854 35 H 0.192 0.808 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.168 -15.308 0.269 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.470 4.470 8 H 0.119 0.881 9 O -0.047 6.047 10 C 0.137 3.863 11 C -0.219 4.219 12 C -0.015 4.015 13 C -0.315 4.315 14 C 0.145 3.855 15 C -0.287 4.287 16 O -0.128 6.128 17 C 0.072 3.928 18 C -0.264 4.264 19 C -0.005 4.005 20 C -0.101 4.101 21 C -0.130 4.130 22 C 0.000 4.000 23 C 0.005 3.995 24 C -0.128 4.128 25 O -0.223 6.223 26 C -0.055 4.055 27 C -0.056 4.056 28 O -0.223 6.223 29 C 0.324 3.676 30 O -0.370 6.370 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.209 0.791 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.566 -15.416 0.252 24.134 hybrid contribution 0.729 0.523 -0.155 0.911 sum 19.295 -14.894 0.097 24.375 Atomic orbital electron populations 1.70030 1.06219 1.28555 1.42723 1.25462 0.95953 0.99338 0.95602 0.85539 0.79330 0.79444 0.78594 1.18650 1.19773 1.19763 1.21616 0.92353 0.80291 1.52737 0.88052 1.83960 1.34692 1.11840 1.74239 1.19135 0.88919 0.88048 0.90203 1.20072 1.00457 0.89779 1.11639 1.20269 0.91227 0.97817 0.92188 1.19954 0.95514 0.92623 1.23375 1.18943 0.78057 0.93961 0.94535 1.20252 0.92808 0.97038 1.18576 1.82856 1.17984 1.34768 1.77165 1.23795 0.95035 0.83875 0.90074 1.21128 0.95814 0.92798 1.16709 1.17830 0.93569 0.94310 0.94782 1.20995 0.98302 0.92843 0.97940 1.20353 0.93125 0.99531 0.99952 1.18934 0.94437 0.88255 0.98327 1.18665 0.92293 0.95821 0.92758 1.20456 0.95567 0.96423 1.00396 1.86318 1.31501 1.62891 1.41562 1.23607 0.89001 0.89869 1.02977 1.23609 0.95787 0.97242 0.88917 1.86309 1.53940 1.44545 1.37557 1.19533 0.86673 0.88165 0.73243 1.90631 1.76007 1.27648 1.42724 0.91351 0.85203 0.84980 0.83625 0.79112 0.84714 0.84658 0.84676 0.90535 0.86171 0.86197 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.68 13.67 55.48 0.76 -21.92 16 2 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 3 Si 0.95 18.72 29.55 -169.99 -5.02 13.69 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.40 -10.02 9.48 30.90 0.29 -9.73 16 8 H 0.10 2.36 5.17 -52.49 -0.27 2.09 16 9 O -0.15 -3.83 9.74 0.53 0.01 -3.82 16 10 C 0.20 4.34 6.65 -38.99 -0.26 4.08 16 11 C -0.20 -3.96 9.92 -39.74 -0.39 -4.35 16 12 C 0.00 0.07 9.61 -39.69 -0.38 -0.31 16 13 C -0.31 -5.86 5.89 -104.77 -0.62 -6.48 16 14 C 0.19 3.51 6.77 -38.46 -0.26 3.25 16 15 C -0.27 -5.44 9.11 -39.23 -0.36 -5.80 16 16 O -0.22 -3.51 9.66 6.33 0.06 -3.44 16 17 C 0.14 1.77 10.77 29.86 0.32 2.09 16 18 C -0.26 -3.88 5.60 -102.94 -0.58 -4.45 16 19 C 0.00 -0.06 5.37 -104.92 -0.56 -0.62 16 20 C -0.08 -1.10 9.02 -39.26 -0.35 -1.45 16 21 C -0.11 -1.34 9.94 -39.47 -0.39 -1.73 16 22 C 0.05 0.55 6.50 -39.06 -0.25 0.30 16 23 C 0.05 0.60 6.49 -39.17 -0.25 0.35 16 24 C -0.11 -1.36 9.38 -39.09 -0.37 -1.73 16 25 O -0.31 -3.35 10.41 -32.94 -0.34 -3.70 16 26 C 0.02 0.14 7.26 37.40 0.27 0.41 16 27 C 0.02 0.14 7.26 37.40 0.27 0.41 16 28 O -0.31 -3.32 10.42 -33.06 -0.34 -3.66 16 29 C 0.44 7.90 7.09 -32.18 -0.23 7.67 16 30 O -0.49 -9.67 16.29 5.01 0.08 -9.59 16 31 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.13 2.23 7.80 -52.49 -0.41 1.82 16 34 H 0.15 2.92 5.59 -52.49 -0.29 2.63 16 35 H 0.19 1.59 7.97 -52.49 -0.42 1.17 16 36 H 0.13 1.80 7.87 -52.49 -0.41 1.38 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.14 1.47 8.04 -52.49 -0.42 1.05 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -31.35 368.10 -7.35 -38.71 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -3.90 Total: 5.29 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -4.20 Total: -17.10 kcal Atomic # 7 Polarization: -22.68 SS G_CDS: 0.76 Total: -21.92 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.54 Total: -24.21 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.35 -7.35 -38.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002407695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.267 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds