Wall clock time and date at job start Tue Mar 31 2020 05:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38288 * 119.96328 * 2 1 4 4 C 1.38283 * 120.13892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.96181 * 179.97438 * 4 3 2 6 6 C 1.38113 * 120.07042 * 359.95711 * 4 3 2 7 7 C 1.38870 * 119.93217 * 0.02562 * 6 4 3 8 8 N 1.39924 * 120.07331 * 179.72386 * 7 6 4 9 9 C 1.46500 * 119.99954 * 67.91059 * 8 7 6 10 10 C 1.50704 * 109.46754 * 90.00095 * 9 8 7 11 11 H 1.07997 * 119.99897 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99988 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00238 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00079 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46953 * 60.00005 * 14 12 10 16 16 H 1.48496 * 109.46993 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46924 * 300.00429 * 14 12 10 18 18 C 1.34776 * 120.00196 * 247.92051 * 8 7 6 19 19 O 1.21287 * 119.99792 * 4.73112 * 18 8 7 20 20 C 1.50698 * 120.00053 * 184.74321 * 18 8 7 21 21 O 1.42902 * 109.46840 * 179.97438 * 20 18 8 22 22 C 1.35762 * 116.99536 * 179.97438 * 21 20 18 23 23 C 1.38954 * 119.90740 * 359.73113 * 22 21 20 24 24 C 1.37733 * 120.09845 * 179.71848 * 23 22 21 25 25 C 1.39764 * 119.89937 * 0.54972 * 24 23 22 26 26 C 1.43199 * 120.09387 * 179.70143 * 25 24 23 27 27 N 9.89543 * 135.65609 * 205.41236 * 8 1 2 28 28 C 1.39762 * 119.81097 * 359.72212 * 25 24 23 29 29 C 1.37727 * 119.90155 * 0.02562 * 28 25 24 30 30 C 1.38110 * 119.96717 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47406 * 89.99410 * 1 2 3 32 32 H 1.09003 * 109.47219 * 210.00155 * 1 2 3 33 33 H 1.09008 * 109.47041 * 329.99102 * 1 2 3 34 34 H 1.07994 * 119.92893 * 0.02562 * 3 2 1 35 35 H 1.08993 * 109.47087 * 269.97748 * 5 4 3 36 36 H 1.09001 * 109.46715 * 29.98022 * 5 4 3 37 37 H 1.09001 * 109.46488 * 149.97622 * 5 4 3 38 38 H 1.08003 * 120.03363 * 179.97438 * 6 4 3 39 39 H 1.08994 * 109.47328 * 210.00230 * 9 8 7 40 40 H 1.09006 * 109.47029 * 330.00751 * 9 8 7 41 41 H 0.97000 * 120.00651 * 179.97438 * 13 12 10 42 42 H 1.09003 * 109.46524 * 299.98802 * 20 18 8 43 43 H 1.08989 * 109.47315 * 59.99459 * 20 18 8 44 44 H 1.08010 * 119.95391 * 359.97256 * 23 22 21 45 45 H 1.07992 * 120.05362 * 180.25155 * 24 23 22 46 46 H 1.07996 * 120.04305 * 179.97438 * 28 25 24 47 47 H 1.08007 * 119.95290 * 179.97438 * 29 28 25 48 48 H 1.08005 * 120.03523 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1981 0.0000 4 6 3.5805 1.2023 -0.0005 5 6 4.3291 2.5102 -0.0011 6 6 4.2762 0.0092 -0.0002 7 6 3.5856 -1.1956 0.0002 8 7 4.2874 -2.4061 -0.0053 9 6 5.0724 -2.8030 1.1662 10 6 4.2048 -3.6005 2.1055 11 1 3.1722 -3.7929 1.8547 12 6 4.7298 -4.0855 3.2846 13 7 5.9874 -3.8517 3.5898 14 14 3.6545 -5.0747 4.4486 15 1 3.1564 -6.2879 3.7519 16 1 4.4506 -5.4779 5.6356 17 1 2.5020 -4.2453 4.8833 18 6 4.2413 -3.2069 -1.0884 19 8 3.6630 -2.8403 -2.0894 20 6 4.9082 -4.5579 -1.0554 21 8 4.7211 -5.2122 -2.3121 22 6 5.2646 -6.4486 -2.4501 23 6 5.9694 -7.0171 -1.3961 24 6 6.5175 -8.2736 -1.5299 25 6 6.3737 -8.9721 -2.7319 26 6 6.9474 -10.2761 -2.8776 27 7 7.4012 -11.3110 -2.9930 28 6 5.6689 -8.3941 -3.7913 29 6 5.1196 -7.1394 -3.6471 30 6 2.1968 -1.1965 0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5140 34 1 1.6559 2.1323 0.0004 35 1 4.5096 2.8251 -1.0289 36 1 3.7372 3.2678 0.5125 37 1 5.2820 2.3836 0.5128 38 1 5.3562 0.0132 -0.0010 39 1 5.9183 -3.4119 0.8475 40 1 5.4380 -1.9122 1.6773 41 1 6.3567 -4.1925 4.4195 42 1 5.9743 -4.4323 -0.8661 43 1 4.4670 -5.1617 -0.2626 44 1 6.0842 -6.4747 -0.4692 45 1 7.0617 -8.7165 -0.7089 46 1 5.5558 -8.9303 -4.7219 47 1 4.5751 -6.6918 -4.4654 48 1 1.6569 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002625264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:52 Heat of formation + Delta-G solvation = 4.085744 kcal Electronic energy + Delta-G solvation = -31316.614663 eV Core-core repulsion = 27108.853120 eV Total energy + Delta-G solvation = -4207.761543 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -40.53171 -39.89102 -38.55268 -37.63855 -36.14062 -35.34380 -33.29035 -32.91726 -31.50148 -30.98843 -30.45558 -28.09230 -27.46208 -26.84418 -26.43483 -23.52951 -23.27307 -23.10939 -21.80578 -20.43473 -19.09228 -18.69707 -18.20653 -16.95622 -16.51790 -16.33935 -15.98896 -15.83202 -15.50953 -15.34048 -14.74842 -14.51987 -14.15597 -14.11885 -13.85498 -13.69178 -13.66755 -13.60161 -13.27745 -13.07381 -12.82051 -12.68112 -12.58860 -12.40805 -12.38499 -12.21990 -12.15139 -11.84768 -11.78273 -11.36478 -11.29145 -11.08175 -11.01291 -10.98447 -10.84414 -10.81156 -10.34063 -10.01300 -9.39183 -9.27279 -8.73861 -8.64951 -8.33023 -8.22973 -7.80143 -6.35911 -4.45072 0.73045 1.15703 1.64900 1.71342 2.58404 2.75152 2.85226 2.99948 3.14023 3.20372 3.23393 3.75574 3.80253 3.89123 4.03682 4.20244 4.60382 4.69693 4.95896 4.98139 4.98904 5.00848 5.09695 5.24126 5.33411 5.39017 5.41924 5.43374 5.50972 5.53765 5.68165 5.69832 5.76923 5.78343 5.84367 5.90116 5.97489 5.99931 6.14156 6.14985 6.17553 6.41810 6.44342 6.53788 6.75156 6.82410 6.88174 6.97459 7.12629 7.23866 7.41043 7.51087 7.59282 7.81285 7.93839 8.55186 8.70194 9.24019 10.70619 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.008515 B = 0.002767 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.387898 B =10118.534732 C =12111.171059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.079 4.079 3 C -0.131 4.131 4 C -0.079 4.079 5 C -0.109 4.109 6 C -0.126 4.126 7 C 0.181 3.819 8 N -0.556 5.556 9 C 0.236 3.764 10 C -0.546 4.546 11 H 0.063 0.937 12 C 0.071 3.929 13 N -0.887 5.887 14 Si 0.896 3.104 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.525 3.475 19 O -0.535 6.535 20 C 0.044 3.956 21 O -0.288 6.288 22 C 0.171 3.829 23 C -0.211 4.211 24 C -0.023 4.023 25 C -0.084 4.084 26 C 0.265 3.735 27 N -0.435 5.435 28 C -0.031 4.031 29 C -0.156 4.156 30 C -0.109 4.109 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.268 0.732 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.148 0.852 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.142 0.858 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 3.504 -8.142 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.079 4.079 3 C -0.150 4.150 4 C -0.080 4.080 5 C -0.166 4.166 6 C -0.146 4.146 7 C 0.091 3.909 8 N -0.285 5.285 9 C 0.118 3.882 10 C -0.585 4.585 11 H 0.081 0.919 12 C -0.133 4.133 13 N -0.525 5.525 14 Si 0.723 3.277 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.200 1.200 18 C 0.313 3.687 19 O -0.412 6.412 20 C -0.034 4.034 21 O -0.199 6.199 22 C 0.123 3.877 23 C -0.230 4.230 24 C -0.044 4.044 25 C -0.088 4.088 26 C -0.049 4.049 27 N -0.111 5.111 28 C -0.051 4.051 29 C -0.174 4.174 30 C -0.128 4.128 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.131 0.869 44 H 0.166 0.834 45 H 0.154 0.846 46 H 0.155 0.845 47 H 0.160 0.840 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.136 2.156 -8.823 9.331 hybrid contribution -0.471 -0.283 1.338 1.446 sum -2.606 1.873 -7.486 8.145 Atomic orbital electron populations 1.20743 0.91370 1.02514 1.02016 1.19682 0.95792 0.92690 0.99776 1.20764 0.93372 0.97140 1.03678 1.19642 0.93680 0.94686 0.99993 1.20739 0.99924 0.93962 1.01969 1.21019 0.99851 0.91060 1.02631 1.17419 0.90426 0.85249 0.97855 1.45767 1.48696 1.17254 1.16784 1.19651 0.90496 0.97010 0.81084 1.21385 0.97891 1.34722 1.04475 0.91869 1.24901 0.95060 0.95891 0.97488 1.69891 1.12879 1.44864 1.24840 0.86577 0.80465 0.80440 0.80240 1.19894 1.20986 1.19954 1.19825 0.80779 0.85243 0.82895 1.90697 1.44191 1.74500 1.31840 1.22694 1.02517 0.93135 0.85022 1.86094 1.71098 1.26788 1.35897 1.19393 0.90108 0.84313 0.93861 1.21431 1.03579 0.97645 1.00341 1.20972 0.95116 0.92901 0.95375 1.15907 1.06680 0.89262 0.96979 1.25685 0.93075 0.92667 0.93489 1.81238 1.10177 1.11785 1.07894 1.20895 0.93208 0.93666 0.97341 1.20344 1.05289 0.94902 0.96897 1.21062 0.93205 0.97800 1.00768 0.91414 0.91614 0.91785 0.86486 0.91478 0.91766 0.91578 0.86052 0.94133 0.93783 0.92186 0.88443 0.86870 0.83437 0.84638 0.84501 0.84001 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 36.00 0.36 -0.96 16 2 C -0.08 -1.22 5.88 -104.65 -0.62 -1.83 16 3 C -0.13 -1.88 9.35 -39.55 -0.37 -2.25 16 4 C -0.08 -1.18 5.88 -104.65 -0.62 -1.79 16 5 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16 6 C -0.13 -2.18 9.34 -39.39 -0.37 -2.54 16 7 C 0.18 3.51 4.76 -83.69 -0.40 3.11 16 8 N -0.56 -11.07 2.51 -114.74 -0.29 -11.36 16 9 C 0.24 5.07 4.88 -5.19 -0.03 5.05 16 10 C -0.55 -12.94 9.16 -34.44 -0.32 -13.25 16 11 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 12 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -22.49 13.29 55.43 0.74 -21.76 16 14 Si 0.90 19.22 29.54 -169.99 -5.02 14.20 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 C 0.53 10.26 7.60 -10.99 -0.08 10.17 16 19 O -0.54 -11.76 16.25 -14.36 -0.23 -12.00 16 20 C 0.04 0.71 3.88 36.00 0.14 0.85 16 21 O -0.29 -4.54 9.66 -38.90 -0.38 -4.92 16 22 C 0.17 2.21 6.69 -39.05 -0.26 1.95 16 23 C -0.21 -2.50 9.01 -39.50 -0.36 -2.86 16 24 C -0.02 -0.24 9.75 -39.20 -0.38 -0.62 16 25 C -0.08 -0.88 5.74 -106.83 -0.61 -1.49 16 26 C 0.27 3.13 15.33 -22.47 -0.34 2.78 16 27 N -0.43 -6.06 18.54 41.84 0.78 -5.28 16 28 C -0.03 -0.28 9.75 -39.20 -0.38 -0.67 16 29 C -0.16 -1.67 9.97 -39.50 -0.39 -2.06 16 30 C -0.11 -1.99 9.19 -39.39 -0.36 -2.36 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.06 0.65 8.09 -51.92 -0.42 0.23 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 37 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 39 H 0.04 0.85 6.47 -51.93 -0.34 0.52 16 40 H 0.04 1.02 7.86 -51.93 -0.41 0.61 16 41 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 42 H 0.10 1.42 6.75 -51.93 -0.35 1.07 16 43 H 0.11 1.84 7.44 -51.93 -0.39 1.45 16 44 H 0.15 1.75 6.28 -52.48 -0.33 1.42 16 45 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 47 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 48 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 420.61 15.07 6.34 6.34 Total: -1.00 -29.27 420.61 -9.61 -38.88 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.42 Total: 3.90 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -5.12 Total: -8.00 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 1.22 Total: -38.40 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.61 Total: -16.92 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -29.27 -9.61 -38.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002625264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.964 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds