Wall clock time and date at job start Tue Mar 31 2020 06:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35956 * 117.00012 * 2 1 4 4 C 1.38079 * 119.99953 * 0.02562 * 3 2 1 5 5 C 1.39978 * 119.83523 * 179.97438 * 4 3 2 6 6 C 1.46962 * 120.07864 * 180.02562 * 5 4 3 7 7 C 1.35047 * 120.00422 * 180.02562 * 6 5 4 8 8 C 1.46206 * 120.00069 * 180.02562 * 7 6 5 9 9 O 1.21740 * 120.00210 * 5.02704 * 8 7 6 10 10 N 1.34779 * 119.99619 * 185.03757 * 8 7 6 11 11 C 1.46525 * 124.97222 * 354.85056 * 10 8 7 12 12 C 1.53751 * 105.28225 * 180.02562 * 11 10 8 13 13 C 1.51211 * 104.55941 * 359.95236 * 12 11 10 14 14 C 1.38175 * 130.98167 * 180.02562 * 13 12 11 15 15 C 1.38238 * 120.15529 * 180.02562 * 14 13 12 16 16 C 1.38306 * 119.82724 * 359.97438 * 15 14 13 17 17 C 1.37827 * 120.22983 * 359.97438 * 16 15 14 18 18 C 1.38587 * 108.55367 * 359.97438 * 13 12 11 19 19 C 1.40032 * 119.84470 * 0.27311 * 5 4 3 20 20 C 1.37646 * 120.00067 * 359.44715 * 19 5 4 21 21 C 1.39065 * 120.15701 * 0.55670 * 20 19 5 22 22 O 1.35616 * 119.91894 * 179.74473 * 21 20 19 23 23 C 1.34758 * 116.99796 * 5.59295 * 22 21 20 24 24 H 1.07996 * 120.00275 * 354.93732 * 23 22 21 25 25 C 1.38707 * 119.99883 * 174.94487 * 23 22 21 26 26 N 1.31521 * 119.99787 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00174 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47278 * 59.99610 * 27 25 23 29 29 H 1.48502 * 109.46924 * 179.97438 * 27 25 23 30 30 H 1.48505 * 109.47083 * 299.99648 * 27 25 23 31 31 H 1.09004 * 109.47189 * 299.99758 * 1 2 3 32 32 H 1.08999 * 109.46839 * 59.99880 * 1 2 3 33 33 H 1.08996 * 109.47398 * 179.97438 * 1 2 3 34 34 H 1.07998 * 120.08190 * 359.95730 * 4 3 2 35 35 H 1.08000 * 119.99764 * 359.97438 * 6 5 4 36 36 H 1.08000 * 119.99814 * 359.97438 * 7 6 5 37 37 H 1.09005 * 110.30118 * 61.05012 * 11 10 8 38 38 H 1.08999 * 110.29967 * 299.00827 * 11 10 8 39 39 H 1.08997 * 110.41341 * 118.71901 * 12 11 10 40 40 H 1.08990 * 110.41592 * 241.17988 * 12 11 10 41 41 H 1.08000 * 119.92566 * 359.95422 * 14 13 12 42 42 H 1.07994 * 120.08671 * 179.97438 * 15 14 13 43 43 H 1.08001 * 119.88170 * 180.02562 * 16 15 14 44 44 H 1.08002 * 119.85844 * 180.02562 * 17 16 15 45 45 H 1.08005 * 120.00021 * 179.72567 * 19 5 4 46 46 H 1.07992 * 119.92274 * 180.27222 * 20 19 5 47 47 H 0.97007 * 119.99922 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0005 5 6 1.9333 3.6148 0.0011 6 6 1.1381 4.8507 0.0022 7 6 1.7562 6.0514 0.0022 8 6 0.9650 7.2809 0.0039 9 8 -0.2474 7.2245 0.0977 10 7 1.5781 8.4768 -0.0986 11 6 3.0294 8.6784 -0.1092 12 6 3.2265 10.1975 -0.2416 13 6 1.8238 10.7593 -0.2990 14 6 1.3727 12.0600 -0.4164 15 6 0.0162 12.3245 -0.4467 16 6 -0.8898 11.2832 -0.3597 17 6 -0.4447 9.9839 -0.2436 18 6 0.9241 9.7087 -0.2124 19 6 3.3320 3.6803 -0.0047 20 6 4.0753 2.5218 0.0006 21 6 3.4405 1.2844 0.0000 22 8 4.1776 0.1461 0.0000 23 6 5.5131 0.2820 0.1176 24 1 5.9573 1.2664 0.1240 25 6 6.3174 -0.8425 0.2302 26 7 5.7765 -2.0413 0.2228 27 14 8.1688 -0.6542 0.3925 28 1 8.4812 0.1340 1.6117 29 1 8.7955 -1.9964 0.4972 30 1 8.7014 0.0496 -0.8018 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 0.2156 2.3144 0.0003 35 1 0.0593 4.7987 0.0022 36 1 2.8350 6.1034 0.0018 37 1 3.4765 8.1636 -0.9597 38 1 3.4678 8.3200 0.8221 39 1 3.7577 10.5890 0.6259 40 1 3.7679 10.4322 -1.1579 41 1 2.0815 12.8721 -0.4834 42 1 -0.3352 13.3416 -0.5380 43 1 -1.9498 11.4888 -0.3838 44 1 -1.1575 9.1753 -0.1765 45 1 3.8277 4.6398 -0.0088 46 1 5.1540 2.5738 0.0005 47 1 6.3389 -2.8277 0.3019 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002661269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:44 Heat of formation + Delta-G solvation = -15.404927 kcal Electronic energy + Delta-G solvation = -30637.381886 eV Core-core repulsion = 26331.056502 eV Total energy + Delta-G solvation = -4306.325384 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 6.34 seconds Orbital eigenvalues (eV) -41.22953 -39.77996 -38.76735 -37.73474 -36.67955 -36.45102 -33.17093 -32.51790 -32.34075 -30.32170 -29.76874 -29.23552 -28.59192 -26.64228 -25.66260 -24.42658 -23.44471 -22.65231 -21.81177 -21.52763 -20.49356 -18.81497 -18.26440 -17.92513 -17.16780 -16.68806 -16.40900 -16.08435 -15.84278 -15.50410 -15.25401 -15.01532 -14.71611 -14.33632 -14.33099 -14.05342 -14.00016 -13.65692 -13.59170 -13.50182 -13.03289 -12.89375 -12.64078 -12.41986 -12.21065 -12.18905 -11.87024 -11.84694 -11.73962 -11.51811 -11.18219 -11.14124 -11.09223 -10.84598 -10.76527 -10.56641 -10.41017 -9.91050 -9.65477 -9.50080 -9.00194 -8.91335 -8.07105 -7.92691 -6.98118 -6.67744 -4.18505 0.75867 1.16579 1.28254 2.05688 2.44147 2.67349 3.01163 3.02730 3.05954 3.33764 3.66954 3.78168 3.89317 4.12375 4.25428 4.40000 4.65026 4.76301 4.79743 4.84013 4.92844 4.95738 5.01832 5.12149 5.19880 5.30336 5.34704 5.42002 5.49820 5.50569 5.50914 5.52840 5.54191 5.63000 5.79301 5.81348 5.92216 6.01883 6.15005 6.21386 6.25895 6.35603 6.37761 6.42560 6.50272 6.76612 6.87542 6.93292 7.02129 7.17939 7.26194 7.40842 7.72459 8.01897 8.04240 8.74853 9.43002 10.47633 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.001871 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.435122 B =14959.028106 C =16960.661840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.134 4.134 5 C -0.171 4.171 6 C 0.047 3.953 7 C -0.283 4.283 8 C 0.567 3.433 9 O -0.535 6.535 10 N -0.557 5.557 11 C 0.101 3.899 12 C -0.085 4.085 13 C -0.144 4.144 14 C -0.080 4.080 15 C -0.149 4.149 16 C -0.095 4.095 17 C -0.135 4.135 18 C 0.155 3.845 19 C -0.056 4.056 20 C -0.226 4.226 21 C 0.149 3.851 22 O -0.144 6.144 23 C -0.391 4.391 24 H 0.098 0.902 25 C 0.042 3.958 26 N -0.842 5.842 27 Si 0.946 3.054 28 H -0.267 1.267 29 H -0.276 1.276 30 H -0.267 1.267 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.139 0.861 45 H 0.116 0.884 46 H 0.138 0.862 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 21.783 -0.992 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.154 4.154 5 C -0.173 4.173 6 C 0.027 3.973 7 C -0.304 4.304 8 C 0.363 3.637 9 O -0.415 6.415 10 N -0.279 5.279 11 C -0.021 4.021 12 C -0.122 4.122 13 C -0.147 4.147 14 C -0.099 4.099 15 C -0.168 4.168 16 C -0.113 4.113 17 C -0.155 4.155 18 C 0.059 3.941 19 C -0.074 4.074 20 C -0.246 4.246 21 C 0.092 3.908 22 O -0.045 6.045 23 C -0.466 4.466 24 H 0.115 0.885 25 C -0.166 4.166 26 N -0.474 5.474 27 Si 0.769 3.231 28 H -0.192 1.192 29 H -0.200 1.200 30 H -0.192 1.192 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.156 0.844 45 H 0.134 0.866 46 H 0.155 0.845 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.313 20.797 -0.926 21.753 hybrid contribution 0.750 0.254 0.074 0.795 sum -5.563 21.051 -0.852 21.790 Atomic orbital electron populations 1.22924 0.80111 1.03127 1.00436 1.86238 1.19620 1.26153 1.89694 1.18038 0.89368 0.84628 1.07270 1.20877 0.98627 0.90885 1.04974 1.18121 0.92779 0.91278 1.15093 1.22273 0.99191 0.90915 0.84883 1.22326 0.99859 0.90881 1.17373 1.18372 0.87370 0.82721 0.75215 1.90752 1.14369 1.86810 1.49520 1.45855 1.07518 1.04597 1.69965 1.22159 0.79739 0.96738 1.03485 1.21102 0.94316 0.93092 1.03735 1.20037 0.94823 0.93108 1.06773 1.20336 0.95677 0.94408 0.99430 1.20991 0.92835 0.99124 1.03823 1.20935 0.99769 0.91889 0.98728 1.20995 0.93315 0.97857 1.03374 1.18470 0.93106 0.84855 0.97653 1.20925 0.92456 0.97354 0.96671 1.20824 1.00728 0.90710 1.12297 1.18892 0.88271 0.87630 0.95979 1.83986 1.19774 1.25936 1.74760 1.21494 0.78335 0.95117 1.51655 0.88475 1.25436 1.01001 0.94128 0.95999 1.70039 1.36886 0.97876 1.42556 0.85703 0.79613 0.78286 0.79462 1.19179 1.20034 1.19181 0.93403 0.93437 0.88922 0.85807 0.85879 0.85439 0.89581 0.89656 0.89150 0.89127 0.85914 0.85827 0.85654 0.84354 0.86639 0.84452 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.30 -6.35 10.28 -34.22 -0.35 -6.70 16 3 C 0.05 1.09 6.70 -39.12 -0.26 0.83 16 4 C -0.13 -2.37 8.77 -38.99 -0.34 -2.71 16 5 C -0.17 -2.88 5.87 -105.04 -0.62 -3.50 16 6 C 0.05 0.70 9.45 -37.18 -0.35 0.35 16 7 C -0.28 -3.91 8.91 -37.52 -0.33 -4.25 16 8 C 0.57 8.45 7.70 -13.06 -0.10 8.35 16 9 O -0.54 -9.38 14.45 5.15 0.07 -9.31 16 10 N -0.56 -7.08 3.13 -114.45 -0.36 -7.44 16 11 C 0.10 0.89 6.22 -3.64 -0.02 0.86 16 12 C -0.09 -0.63 6.94 -27.24 -0.19 -0.82 16 13 C -0.14 -1.46 6.23 -104.27 -0.65 -2.11 16 14 C -0.08 -0.70 10.04 -39.60 -0.40 -1.09 16 15 C -0.15 -1.28 10.06 -39.56 -0.40 -1.68 16 16 C -0.09 -0.94 10.02 -39.71 -0.40 -1.34 16 17 C -0.13 -1.71 9.46 -39.20 -0.37 -2.08 16 18 C 0.15 1.97 6.63 -83.50 -0.55 1.42 16 19 C -0.06 -0.95 9.40 -39.13 -0.37 -1.32 16 20 C -0.23 -4.54 9.14 -39.49 -0.36 -4.90 16 21 C 0.15 3.49 6.67 -38.76 -0.26 3.23 16 22 O -0.14 -3.97 9.52 -13.95 -0.13 -4.10 16 23 C -0.39 -10.26 9.48 30.91 0.29 -9.97 16 24 H 0.10 2.29 5.18 -52.49 -0.27 2.02 16 25 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 26 N -0.84 -23.52 13.67 55.48 0.76 -22.76 16 27 Si 0.95 19.11 29.55 -169.99 -5.02 14.09 16 28 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 29 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 30 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 31 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 32 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.12 1.83 6.28 -52.49 -0.33 1.50 16 35 H 0.12 1.80 7.53 -52.49 -0.40 1.41 16 36 H 0.13 1.51 5.33 -52.49 -0.28 1.23 16 37 H 0.09 0.65 8.13 -51.93 -0.42 0.23 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.14 1.96 6.30 -52.49 -0.33 1.63 16 45 H 0.12 1.59 6.15 -52.48 -0.32 1.27 16 46 H 0.14 2.66 5.61 -52.49 -0.29 2.37 16 47 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 395.80 15.07 5.96 5.96 Total: -1.00 -32.74 395.80 -9.39 -42.13 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.54 Total: 6.44 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -4.78 Total: -18.31 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.40 Total: -30.21 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.41 Total: -20.11 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.74 -9.39 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002661269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.723 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.34 seconds