Wall clock time and date at job start Tue Mar 31 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38380 * 119.83890 * 2 1 4 4 C 1.37925 * 120.15753 * 179.97438 * 3 2 1 5 5 C 1.39711 * 119.84023 * 0.02562 * 4 3 2 6 6 C 1.47442 * 120.16091 * 180.02562 * 5 4 3 7 7 N 1.29823 * 120.00180 * 179.97438 * 6 5 4 8 8 N 1.40102 * 120.00192 * 185.16154 * 7 6 5 9 9 C 1.36868 * 119.79934 * 246.18694 * 8 7 6 10 10 S 1.76198 * 118.48369 * 0.02562 * 9 8 7 11 11 C 1.76199 * 100.00036 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99846 * 359.97438 * 11 10 9 13 13 C 1.38828 * 120.00058 * 179.97438 * 11 10 9 14 14 N 1.31505 * 119.99937 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00123 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47125 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47388 * 119.99733 * 15 13 11 18 18 H 1.48496 * 109.47365 * 239.99995 * 15 13 11 19 19 N 1.30990 * 123.03077 * 180.02562 * 9 8 7 20 20 C 1.34733 * 121.64500 * 359.97438 * 19 9 8 21 21 C 1.39851 * 121.52589 * 180.02562 * 20 19 9 22 22 C 1.36597 * 119.80893 * 179.97438 * 21 20 19 23 23 C 1.38937 * 120.98066 * 0.02562 * 22 21 20 24 24 C 1.37761 * 120.59984 * 359.97414 * 23 22 21 25 25 C 1.39436 * 119.40845 * 0.02562 * 24 23 22 26 26 C 1.35346 * 119.79275 * 66.16379 * 8 7 6 27 27 O 1.21754 * 121.25147 * 0.02562 * 26 8 7 28 28 C 1.39709 * 119.68328 * 0.27706 * 5 4 3 29 29 C 1.37935 * 119.83699 * 359.40164 * 28 5 4 30 30 H 1.09002 * 109.47062 * 89.99795 * 1 2 3 31 31 H 1.08995 * 109.47276 * 210.00174 * 1 2 3 32 32 H 1.08998 * 109.47027 * 329.99924 * 1 2 3 33 33 H 1.07996 * 119.92203 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.08392 * 180.02562 * 4 3 2 35 35 H 1.08001 * 119.99833 * 359.97438 * 6 5 4 36 36 H 0.97003 * 119.99803 * 179.97438 * 14 13 11 37 37 H 1.08008 * 120.09710 * 359.97438 * 21 20 19 38 38 H 1.08000 * 119.50847 * 180.27225 * 22 21 20 39 39 H 1.08004 * 119.69781 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.29942 * 180.02562 * 24 23 22 41 41 H 1.08005 * 120.08268 * 179.72916 * 28 5 4 42 42 H 1.07996 * 119.92081 * 180.32084 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2003 0.0000 4 6 3.5747 1.2080 0.0005 5 6 4.2767 0.0000 0.0005 6 6 5.7511 0.0000 0.0017 7 7 6.4002 -1.1243 0.0022 8 7 7.7969 -1.1268 0.1124 9 6 8.5613 -1.5582 -0.9378 10 16 7.7468 -2.0988 -2.4037 11 6 9.1431 -2.5268 -3.3895 12 1 10.1408 -2.4063 -2.9938 13 6 8.9609 -3.0189 -4.6747 14 7 7.7461 -3.1662 -5.1563 15 14 10.4412 -3.4734 -5.7195 16 1 11.6863 -3.2179 -4.9516 17 1 10.3694 -4.9120 -6.0806 18 1 10.4448 -2.6521 -6.9567 19 7 9.8704 -1.5878 -0.9033 20 6 10.5581 -1.1889 0.1845 21 6 11.9558 -1.2210 0.2184 22 6 12.6175 -0.8077 1.3396 23 6 11.9225 -0.3538 2.4537 24 6 10.5456 -0.3101 2.4515 25 6 9.8492 -0.7271 1.3178 26 6 8.3819 -0.7022 1.2566 27 8 7.7168 -0.3153 2.2002 28 6 3.5748 -1.2080 -0.0059 29 6 2.1955 -1.2003 0.0003 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6516 2.1334 0.0004 34 1 4.1109 2.1455 0.0010 35 1 6.2911 0.9353 0.0021 36 1 7.6188 -3.5097 -6.0545 37 1 12.5105 -1.5715 -0.6396 38 1 13.6971 -0.8303 1.3589 39 1 12.4667 -0.0315 3.3292 40 1 10.0103 0.0440 3.3201 41 1 4.1109 -2.1455 -0.0103 42 1 1.6516 -2.1333 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002802158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:32 Heat of formation + Delta-G solvation = 80.439487 kcal Electronic energy + Delta-G solvation = -28390.430629 eV Core-core repulsion = 24427.473898 eV Total energy + Delta-G solvation = -3962.956731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.094 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.92649 -39.45755 -38.24751 -36.96304 -35.62243 -33.44608 -32.90120 -31.51584 -31.06287 -30.60560 -29.46048 -27.33866 -25.90106 -24.55553 -24.20458 -22.95010 -22.30954 -21.48888 -20.45744 -19.08255 -18.39486 -17.84706 -17.16539 -16.67628 -15.64301 -15.49199 -15.26603 -15.15646 -15.10870 -14.83099 -14.53694 -14.02283 -13.98174 -13.56019 -13.52905 -13.45306 -13.17422 -12.91198 -12.72479 -12.45037 -12.29857 -11.78005 -11.60436 -11.48219 -11.38487 -11.29321 -11.25896 -11.18960 -11.13462 -10.85376 -10.38717 -9.84612 -9.56036 -9.35089 -9.18486 -9.03228 -8.97473 -8.83496 -8.51104 -8.00900 -6.94260 -6.69713 -4.42875 0.59173 0.97681 1.20777 1.34678 2.11524 2.23261 2.63012 2.63973 3.05081 3.12241 3.15489 3.21483 3.75666 3.82673 4.30863 4.45942 4.57429 4.68537 4.71741 4.74824 4.78585 4.92178 4.99489 5.09873 5.15609 5.24806 5.28329 5.35426 5.39098 5.53051 5.57005 5.63668 5.73096 5.74232 5.89982 5.97236 6.05403 6.30642 6.33807 6.41572 6.43236 6.47471 6.67809 6.73999 6.84836 6.92625 7.14698 7.37935 7.39671 8.23765 8.26625 8.51771 8.83358 10.36977 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.006932 B = 0.003659 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4038.166531 B = 7649.996479 C =11365.439157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.067 4.067 3 C -0.130 4.130 4 C -0.076 4.076 5 C -0.070 4.070 6 C 0.187 3.813 7 N -0.255 5.255 8 N -0.404 5.404 9 C 0.330 3.670 10 S 0.210 5.790 11 C -0.544 4.544 12 H 0.119 0.881 13 C 0.078 3.922 14 N -0.866 5.866 15 Si 0.935 3.065 16 H -0.262 1.262 17 H -0.276 1.276 18 H -0.276 1.276 19 N -0.536 5.536 20 C 0.205 3.795 21 C -0.135 4.135 22 C -0.066 4.066 23 C -0.180 4.180 24 C -0.027 4.027 25 C -0.236 4.236 26 C 0.549 3.451 27 O -0.532 6.532 28 C -0.059 4.059 29 C -0.129 4.129 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.278 0.722 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.139 0.861 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.823 7.224 8.499 13.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.068 4.068 3 C -0.148 4.148 4 C -0.096 4.096 5 C -0.073 4.073 6 C -0.022 4.022 7 N -0.055 5.055 8 N -0.216 5.216 9 C -0.033 4.033 10 S 0.456 5.544 11 C -0.692 4.692 12 H 0.137 0.863 13 C -0.133 4.133 14 N -0.499 5.499 15 Si 0.760 3.240 16 H -0.186 1.186 17 H -0.201 1.201 18 H -0.202 1.202 19 N -0.266 5.266 20 C 0.084 3.916 21 C -0.157 4.157 22 C -0.085 4.085 23 C -0.201 4.201 24 C -0.047 4.047 25 C -0.247 4.247 26 C 0.342 3.658 27 O -0.409 6.409 28 C -0.079 4.079 29 C -0.147 4.147 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.151 0.849 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.157 0.843 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.071 6.006 7.796 12.728 hybrid contribution 2.069 0.846 0.392 2.269 sum -6.002 6.852 8.189 12.249 Atomic orbital electron populations 1.20845 0.91104 1.02868 1.02560 1.20125 0.96214 0.93246 0.97233 1.20892 0.93672 0.97701 1.02570 1.21240 0.94286 0.96900 0.97211 1.18397 0.89131 0.94320 1.05422 1.25088 0.94275 0.95567 0.87261 1.75572 0.89001 1.24108 1.16788 1.47424 1.03054 1.57046 1.14121 1.26417 0.90105 0.92923 0.93830 1.83932 1.09413 1.64673 0.96360 1.23772 0.95773 1.49148 1.00525 0.86286 1.25229 0.97821 0.93481 0.96777 1.69910 1.21049 1.41034 1.17902 0.85829 0.80934 0.78308 0.78975 1.18585 1.20147 1.20186 1.69167 1.02160 1.30065 1.25228 1.18937 0.94353 0.90367 0.87980 1.20525 0.91574 1.04203 0.99422 1.20873 0.99743 0.95327 0.92604 1.20871 0.93552 1.06352 0.99298 1.20848 0.93952 0.94074 0.95785 1.20388 0.91147 1.14406 0.98726 1.18748 0.88540 0.76880 0.81595 1.90806 1.66057 1.48304 1.35723 1.21521 0.94005 0.98171 0.94232 1.21038 0.93971 0.97777 1.01904 0.90838 0.91368 0.91467 0.85573 0.85298 0.86348 0.91182 0.84920 0.85867 0.86026 0.85561 0.84307 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.00 36.01 0.36 -0.45 16 2 C -0.07 -0.66 5.89 -104.52 -0.62 -1.27 16 3 C -0.13 -1.26 9.68 -39.64 -0.38 -1.65 16 4 C -0.08 -0.84 9.79 -39.15 -0.38 -1.22 16 5 C -0.07 -0.97 5.87 -105.05 -0.62 -1.58 16 6 C 0.19 3.06 9.96 -14.65 -0.15 2.92 16 7 N -0.25 -4.96 9.09 32.16 0.29 -4.67 16 8 N -0.40 -8.71 3.26 -13.02 -0.04 -8.75 16 9 C 0.33 7.60 7.86 -88.28 -0.69 6.91 16 10 S 0.21 5.09 20.82 -107.50 -2.24 2.85 16 11 C -0.54 -14.22 9.23 30.95 0.29 -13.93 16 12 H 0.12 3.16 6.48 -52.49 -0.34 2.82 16 13 C 0.08 1.99 5.49 -17.47 -0.10 1.89 16 14 N -0.87 -22.82 13.22 55.49 0.73 -22.09 16 15 Si 0.93 19.87 29.55 -169.99 -5.02 14.84 16 16 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 N -0.54 -12.37 8.28 -10.83 -0.09 -12.46 16 20 C 0.21 4.22 6.62 -84.78 -0.56 3.65 16 21 C -0.14 -2.33 9.98 -39.57 -0.40 -2.72 16 22 C -0.07 -0.92 9.95 -39.92 -0.40 -1.32 16 23 C -0.18 -2.51 10.02 -39.50 -0.40 -2.91 16 24 C -0.03 -0.45 9.68 -39.31 -0.38 -0.83 16 25 C -0.24 -4.70 5.90 -104.74 -0.62 -5.31 16 26 C 0.55 11.76 7.58 -12.51 -0.09 11.67 16 27 O -0.53 -11.77 16.50 5.14 0.08 -11.68 16 28 C -0.06 -0.80 9.58 -39.14 -0.37 -1.17 16 29 C -0.13 -1.43 9.68 -39.64 -0.38 -1.81 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 40 H 0.13 1.96 7.82 -52.49 -0.41 1.54 16 41 H 0.14 1.98 7.55 -52.48 -0.40 1.59 16 42 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -31.04 385.68 -10.87 -41.91 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -4.50 Total: 3.38 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -5.89 Total: -9.15 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.89 Total: -47.96 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -2.24 Total: 2.85 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.04 -10.87 -41.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002802158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.347 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds