Wall clock time and date at job start Tue Mar 31 2020 06:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38380 * 119.83890 * 2 1 4 4 C 1.37925 * 120.15753 * 179.97438 * 3 2 1 5 5 C 1.39711 * 119.84023 * 0.02562 * 4 3 2 6 6 C 1.47442 * 120.16091 * 180.02562 * 5 4 3 7 7 N 1.29823 * 120.00180 * 179.97438 * 6 5 4 8 8 N 1.40102 * 120.00192 * 185.16154 * 7 6 5 9 9 C 1.36868 * 119.79934 * 246.18694 * 8 7 6 10 10 S 1.76198 * 118.48369 * 0.02562 * 9 8 7 11 11 C 1.76199 * 100.00036 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99846 * 359.97438 * 11 10 9 13 13 C 1.38828 * 120.00058 * 179.97438 * 11 10 9 14 14 N 1.31505 * 119.99937 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00123 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47125 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47388 * 119.99733 * 15 13 11 18 18 H 1.48496 * 109.47365 * 239.99995 * 15 13 11 19 19 N 1.30990 * 123.03077 * 180.02562 * 9 8 7 20 20 C 1.34733 * 121.64500 * 359.97438 * 19 9 8 21 21 C 1.39851 * 121.52589 * 180.02562 * 20 19 9 22 22 C 1.36597 * 119.80893 * 179.97438 * 21 20 19 23 23 C 1.38937 * 120.98066 * 0.02562 * 22 21 20 24 24 C 1.37761 * 120.59984 * 359.97414 * 23 22 21 25 25 C 1.39436 * 119.40845 * 0.02562 * 24 23 22 26 26 C 1.35346 * 119.79275 * 66.16379 * 8 7 6 27 27 O 1.21754 * 121.25147 * 0.02562 * 26 8 7 28 28 C 1.39709 * 119.68328 * 0.27706 * 5 4 3 29 29 C 1.37935 * 119.83699 * 359.40164 * 28 5 4 30 30 H 1.09002 * 109.47062 * 89.99795 * 1 2 3 31 31 H 1.08995 * 109.47276 * 210.00174 * 1 2 3 32 32 H 1.08998 * 109.47027 * 329.99924 * 1 2 3 33 33 H 1.07996 * 119.92203 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.08392 * 180.02562 * 4 3 2 35 35 H 1.08001 * 119.99833 * 359.97438 * 6 5 4 36 36 H 0.97003 * 119.99803 * 179.97438 * 14 13 11 37 37 H 1.08008 * 120.09710 * 359.97438 * 21 20 19 38 38 H 1.08000 * 119.50847 * 180.27225 * 22 21 20 39 39 H 1.08004 * 119.69781 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.29942 * 180.02562 * 24 23 22 41 41 H 1.08005 * 120.08268 * 179.72916 * 28 5 4 42 42 H 1.07996 * 119.92081 * 180.32084 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2003 0.0000 4 6 3.5747 1.2080 0.0005 5 6 4.2767 0.0000 0.0005 6 6 5.7511 0.0000 0.0017 7 7 6.4002 -1.1243 0.0022 8 7 7.7969 -1.1268 0.1124 9 6 8.5613 -1.5582 -0.9378 10 16 7.7468 -2.0988 -2.4037 11 6 9.1431 -2.5268 -3.3895 12 1 10.1408 -2.4063 -2.9938 13 6 8.9609 -3.0189 -4.6747 14 7 7.7461 -3.1662 -5.1563 15 14 10.4412 -3.4734 -5.7195 16 1 11.6863 -3.2179 -4.9516 17 1 10.3694 -4.9120 -6.0806 18 1 10.4448 -2.6521 -6.9567 19 7 9.8704 -1.5878 -0.9033 20 6 10.5581 -1.1889 0.1845 21 6 11.9558 -1.2210 0.2184 22 6 12.6175 -0.8077 1.3396 23 6 11.9225 -0.3538 2.4537 24 6 10.5456 -0.3101 2.4515 25 6 9.8492 -0.7271 1.3178 26 6 8.3819 -0.7022 1.2566 27 8 7.7168 -0.3153 2.2002 28 6 3.5748 -1.2080 -0.0059 29 6 2.1955 -1.2003 0.0003 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6516 2.1334 0.0004 34 1 4.1109 2.1455 0.0010 35 1 6.2911 0.9353 0.0021 36 1 7.6188 -3.5097 -6.0545 37 1 12.5105 -1.5715 -0.6396 38 1 13.6971 -0.8303 1.3589 39 1 12.4667 -0.0315 3.3292 40 1 10.0103 0.0440 3.3201 41 1 4.1109 -2.1455 -0.0103 42 1 1.6516 -2.1333 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002802158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:31 Heat of formation + Delta-G solvation = 65.274215 kcal Electronic energy + Delta-G solvation = -28391.088244 eV Core-core repulsion = 24427.473898 eV Total energy + Delta-G solvation = -3963.614347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.094 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.50225 -40.40705 -39.65558 -38.57302 -36.97667 -34.86791 -34.55611 -32.77575 -32.04049 -31.82752 -30.95149 -28.27552 -27.82959 -26.04824 -25.58936 -23.94644 -23.36309 -22.94519 -21.53005 -20.75521 -19.86390 -19.35875 -18.84073 -17.89240 -17.03580 -17.02550 -16.79523 -16.75108 -16.13011 -16.02097 -15.79083 -15.42009 -14.92722 -14.89440 -14.71822 -14.57890 -14.52561 -14.37530 -13.81330 -13.56673 -13.47798 -13.09505 -13.02401 -12.98077 -12.93133 -12.72885 -12.45436 -12.36954 -12.24336 -12.07525 -11.89390 -11.42700 -11.34777 -10.99585 -10.86902 -10.61077 -10.20224 -9.92723 -9.73919 -9.44490 -8.64500 -8.57802 -6.39295 -0.63059 -0.39663 -0.22162 0.45825 0.46823 0.96707 1.05912 1.15210 1.37924 1.39457 1.55381 1.70714 2.08578 2.81434 2.84234 2.85258 2.97706 3.10365 3.27529 3.45924 3.64175 3.81352 3.96833 4.00331 4.06947 4.09315 4.30268 4.32714 4.38902 4.48769 4.50807 4.74704 4.84292 4.85191 4.90514 4.99836 5.05118 5.12953 5.24435 5.27275 5.40287 5.43160 5.44725 5.46551 5.46944 5.63093 5.87480 5.93468 5.99397 6.25976 6.69852 6.85154 6.91127 8.51129 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.006932 B = 0.003659 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4038.166531 B = 7649.996479 C =11365.439157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.058 4.058 3 C -0.129 4.129 4 C -0.071 4.071 5 C -0.101 4.101 6 C 0.201 3.799 7 N -0.295 5.295 8 N -0.404 5.404 9 C 0.332 3.668 10 S 0.159 5.841 11 C -0.564 4.564 12 H 0.107 0.893 13 C 0.034 3.966 14 N -0.900 5.900 15 Si 1.000 3.000 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.266 1.266 19 N -0.549 5.549 20 C 0.160 3.840 21 C -0.141 4.141 22 C -0.047 4.047 23 C -0.146 4.146 24 C -0.042 4.042 25 C -0.247 4.247 26 C 0.536 3.464 27 O -0.551 6.551 28 C -0.077 4.077 29 C -0.138 4.138 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.126 0.874 36 H 0.283 0.717 37 H 0.138 0.862 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.137 0.863 41 H 0.116 0.884 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.771 9.092 10.268 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.147 4.147 4 C -0.091 4.091 5 C -0.104 4.104 6 C -0.006 4.006 7 N -0.096 5.096 8 N -0.215 5.215 9 C -0.034 4.034 10 S 0.402 5.598 11 C -0.712 4.712 12 H 0.125 0.875 13 C -0.173 4.173 14 N -0.535 5.535 15 Si 0.821 3.179 16 H -0.186 1.186 17 H -0.193 1.193 18 H -0.191 1.191 19 N -0.279 5.279 20 C 0.042 3.958 21 C -0.162 4.162 22 C -0.067 4.067 23 C -0.165 4.165 24 C -0.061 4.061 25 C -0.258 4.258 26 C 0.331 3.669 27 O -0.429 6.429 28 C -0.097 4.097 29 C -0.155 4.155 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.179 0.821 34 H 0.168 0.832 35 H 0.143 0.857 36 H 0.092 0.908 37 H 0.156 0.844 38 H 0.191 0.809 39 H 0.189 0.811 40 H 0.155 0.845 41 H 0.134 0.866 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.967 7.906 9.634 14.278 hybrid contribution 1.776 0.459 0.202 1.845 sum -5.191 8.365 9.837 13.917 Atomic orbital electron populations 1.20934 0.88498 1.04265 1.03592 1.20581 0.98087 0.92631 0.94622 1.21328 0.93067 0.99145 1.01113 1.21548 0.95215 0.96523 0.95815 1.18490 0.87614 0.95781 1.08495 1.25535 0.95734 0.95047 0.84333 1.75637 0.87720 1.25580 1.20689 1.47472 1.04135 1.56223 1.13642 1.26110 0.90409 0.93215 0.93679 1.83843 1.10014 1.68152 0.97758 1.23812 0.95521 1.50443 1.01411 0.87513 1.26097 1.00532 0.93133 0.97567 1.69992 1.22770 1.42281 1.18458 0.84884 0.77330 0.78362 0.77360 1.18636 1.19292 1.19116 1.69091 1.02492 1.29374 1.26942 1.19344 0.95863 0.92769 0.87853 1.20827 0.90090 1.04156 1.01129 1.21435 1.02160 0.92299 0.90761 1.21495 0.92321 1.02251 1.00466 1.21151 0.95459 0.94508 0.95011 1.20621 0.90470 1.14776 0.99889 1.19167 0.89457 0.76874 0.81437 1.90763 1.66602 1.49541 1.36027 1.21501 0.95297 0.97396 0.95553 1.21268 0.92943 0.99472 1.01864 0.89773 0.90545 0.89606 0.82105 0.83171 0.85692 0.90790 0.84442 0.80857 0.81121 0.84510 0.86571 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.00 71.24 0.71 -0.54 16 2 C -0.06 -1.03 5.89 -19.80 -0.12 -1.15 16 3 C -0.13 -2.19 9.68 22.23 0.22 -1.98 16 4 C -0.07 -1.51 9.79 22.55 0.22 -1.29 16 5 C -0.10 -2.94 5.87 -20.14 -0.12 -3.05 16 6 C 0.20 7.08 9.96 87.42 0.87 7.95 16 7 N -0.29 -12.54 9.09 -52.16 -0.47 -13.01 16 8 N -0.40 -18.70 3.26 -312.98 -1.02 -19.73 16 9 C 0.33 16.46 7.86 179.53 1.41 17.87 16 10 S 0.16 8.38 20.82 -56.49 -1.18 7.21 16 11 C -0.56 -31.30 9.23 67.96 0.63 -30.68 16 12 H 0.11 6.00 6.48 -2.91 -0.02 5.98 16 13 C 0.03 1.80 5.49 84.88 0.47 2.26 16 14 N -0.90 -49.74 13.22 21.65 0.29 -49.46 16 15 Si 1.00 41.85 29.55 68.60 2.03 43.88 16 16 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 18 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 19 N -0.55 -26.72 8.28 -188.19 -1.56 -28.28 16 20 C 0.16 6.67 6.62 39.87 0.26 6.94 16 21 C -0.14 -4.59 9.98 22.28 0.22 -4.37 16 22 C -0.05 -1.10 9.95 22.05 0.22 -0.88 16 23 C -0.15 -3.33 10.02 22.32 0.22 -3.10 16 24 C -0.04 -1.30 9.68 22.45 0.22 -1.08 16 25 C -0.25 -9.96 5.90 -19.94 -0.12 -10.07 16 26 C 0.54 24.06 7.58 86.41 0.65 24.71 16 27 O -0.55 -25.29 16.50 -4.52 -0.07 -25.36 16 28 C -0.08 -2.24 9.58 22.55 0.22 -2.02 16 29 C -0.14 -3.06 9.68 22.23 0.22 -2.84 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 32 H 0.09 0.65 8.08 -2.39 -0.02 0.63 16 33 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 35 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 36 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 40 H 0.14 3.95 7.82 -2.91 -0.02 3.93 16 41 H 0.12 3.80 7.55 -2.91 -0.02 3.78 16 42 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -74.51 385.68 5.48 -69.03 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.06 Total: 19.04 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 6.40 Total: -3.31 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -2.77 Total: -110.47 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.07 Total: -25.36 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: 8.38 SS G_CDS: -1.18 Total: 7.21 kcal Total: -74.51 5.48 -69.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002802158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.306 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds