Wall clock time and date at job start Tue Mar 31 2020 07:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99690 * 2 1 4 4 H 1.48503 * 109.47158 * 270.00647 * 3 2 1 5 5 H 1.48496 * 109.46923 * 30.00296 * 3 2 1 6 6 H 1.48496 * 109.46844 * 150.00603 * 3 2 1 7 7 C 1.37871 * 120.00403 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00098 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00171 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47495 * 179.97438 * 9 7 2 11 11 C 1.35032 * 125.93347 * 125.28619 * 10 9 7 12 12 C 1.35088 * 107.98034 * 180.16355 * 11 10 9 13 13 C 1.50697 * 126.07818 * 179.83815 * 12 11 10 14 14 N 1.46905 * 109.47066 * 259.69112 * 13 12 11 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 13 17 17 C 1.38242 * 119.99531 * 269.72281 * 16 15 14 18 18 C 1.38237 * 119.99538 * 179.76506 * 17 16 15 19 19 C 1.38231 * 120.00299 * 0.49110 * 18 17 16 20 20 C 1.38240 * 120.00017 * 359.78263 * 19 18 17 21 21 C 1.38231 * 120.00460 * 89.99687 * 16 15 14 22 22 C 1.40845 * 107.84792 * 359.57336 * 12 11 10 23 23 C 1.48418 * 126.04029 * 180.22803 * 22 12 11 24 24 C 1.39332 * 120.09406 * 324.72442 * 23 22 12 25 25 C 1.37978 * 119.90714 * 179.69773 * 24 23 22 26 26 C 1.38545 * 120.09322 * 0.60218 * 25 24 23 27 27 F 1.35098 * 119.90876 * 179.69524 * 26 25 24 28 28 C 1.38550 * 120.18860 * 359.67624 * 26 25 24 29 29 C 1.37986 * 120.09209 * 0.02562 * 28 26 25 30 30 N 1.31625 * 107.92395 * 0.26652 * 22 12 11 31 31 H 0.97000 * 120.00335 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47580 * 59.99928 * 9 7 2 33 33 H 1.09004 * 109.47483 * 299.99798 * 9 7 2 34 34 H 1.08003 * 126.00925 * 0.02562 * 11 10 9 35 35 H 1.09001 * 109.47558 * 139.69275 * 13 12 11 36 36 H 1.08998 * 109.47216 * 19.68937 * 13 12 11 37 37 H 1.00901 * 110.99869 * 56.04737 * 14 13 12 38 38 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 39 39 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 40 40 H 1.08000 * 120.00220 * 0.02562 * 17 16 15 41 41 H 1.08001 * 119.99684 * 180.25339 * 18 17 16 42 42 H 1.07997 * 120.00360 * 179.76638 * 19 18 17 43 43 H 1.07995 * 120.00363 * 179.97438 * 20 19 18 44 44 H 1.08001 * 119.99947 * 0.02562 * 21 16 15 45 45 H 1.08005 * 120.04516 * 359.97438 * 24 23 22 46 46 H 1.07998 * 119.95971 * 180.29997 * 25 24 23 47 47 H 1.07992 * 119.95340 * 180.02562 * 28 26 25 48 48 H 1.07993 * 120.04844 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.8593 -3.1118 -0.8937 12 6 5.0584 -4.4045 -0.5557 13 6 5.9431 -5.3853 -1.2811 14 7 5.1186 -6.2472 -2.1387 15 6 5.9492 -7.2187 -2.8627 16 6 5.0707 -8.0826 -3.7303 17 6 4.5478 -9.2600 -3.2289 18 6 3.7380 -10.0501 -4.0232 19 6 3.4594 -9.6680 -5.3222 20 6 3.9870 -8.4935 -5.8254 21 6 4.7925 -7.7008 -5.0294 22 6 4.2968 -4.6710 0.5987 23 6 4.2230 -5.9683 1.3159 24 6 4.2727 -7.1645 0.6031 25 6 4.2101 -8.3684 1.2743 26 6 4.0854 -8.3889 2.6540 27 9 4.0183 -9.5697 3.3068 28 6 4.0298 -7.2018 3.3662 29 6 4.0980 -5.9934 2.7034 30 7 3.6614 -3.5666 0.9288 31 1 -0.4850 0.8400 0.0004 32 1 3.8752 -0.6802 0.8888 33 1 3.8745 -0.6799 -0.8912 34 1 5.3069 -2.5985 -1.7319 35 1 6.4769 -5.9989 -0.5553 36 1 6.6610 -4.8417 -1.8952 37 1 4.5645 -5.6973 -2.7780 38 1 6.6675 -6.6881 -3.4878 39 1 6.4827 -7.8448 -2.1476 40 1 4.7684 -9.5604 -2.2152 41 1 3.3261 -10.9678 -3.6302 42 1 2.8299 -10.2872 -5.9440 43 1 3.7697 -8.1952 -6.8404 44 1 5.2050 -6.7834 -5.4227 45 1 4.3646 -7.1493 -0.4729 46 1 4.2534 -9.2961 0.7230 47 1 3.9331 -7.2222 4.4416 48 1 4.0550 -5.0686 3.2593 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002846483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:45 Heat of formation + Delta-G solvation = 84.580093 kcal Electronic energy + Delta-G solvation = -31275.240873 eV Core-core repulsion = 27017.916706 eV Total energy + Delta-G solvation = -4257.324168 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.160 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -48.78523 -40.75867 -39.43128 -38.49626 -36.27720 -33.87543 -32.40814 -31.92467 -31.04431 -30.89710 -30.28920 -29.50983 -27.62538 -25.76544 -23.69711 -23.45257 -22.79128 -22.70220 -21.59704 -21.27160 -20.00132 -19.34750 -17.49654 -17.12240 -17.06208 -16.46840 -15.98140 -15.72163 -15.47555 -15.46391 -15.17094 -15.02710 -14.68134 -14.38612 -14.15263 -13.85496 -13.60968 -13.54682 -13.30352 -13.18656 -12.88624 -12.74099 -12.71935 -12.59570 -12.32463 -12.17937 -12.02904 -11.86369 -11.43460 -11.18588 -11.10919 -11.05152 -10.82862 -10.77459 -10.32693 -9.98670 -9.70170 -9.08415 -9.06120 -8.98642 -8.92594 -8.81501 -8.44515 -8.17045 -7.67480 -6.28099 -4.31386 1.13573 1.18404 1.26848 1.45274 2.54095 3.08468 3.09730 3.16232 3.17102 3.32171 3.61753 3.95525 4.17623 4.38871 4.44990 4.63578 4.70382 4.84044 4.85853 4.94628 4.96438 4.99848 5.01974 5.10514 5.18533 5.32263 5.36004 5.44573 5.49620 5.52528 5.53811 5.62715 5.73953 5.85432 5.89844 5.98051 6.11852 6.15336 6.29761 6.30694 6.36562 6.36885 6.43030 6.46158 6.48068 6.57288 6.83346 6.84302 6.93199 7.04572 7.12852 7.28069 7.33340 7.65725 8.25495 8.39525 8.81726 9.25932 10.84446 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.006700 B = 0.002962 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4178.104217 B = 9450.337731 C =12308.175595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.078 3.922 3 Si 0.872 3.128 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.087 0.913 9 C 0.230 3.770 10 N -0.319 5.319 11 C 0.056 3.944 12 C -0.246 4.246 13 C 0.143 3.857 14 N -0.680 5.680 15 C 0.094 3.906 16 C -0.080 4.080 17 C -0.098 4.098 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.114 4.114 22 C 0.096 3.904 23 C -0.006 4.006 24 C -0.077 4.077 25 C -0.161 4.161 26 C 0.090 3.910 27 F -0.147 7.147 28 C -0.161 4.161 29 C -0.069 4.069 30 N -0.257 5.257 31 H 0.269 0.731 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.165 0.835 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.348 0.652 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.175 0.825 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.017 -17.307 -6.801 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.126 4.126 3 Si 0.698 3.302 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.105 0.895 9 C 0.111 3.889 10 N -0.098 5.098 11 C -0.094 4.094 12 C -0.259 4.259 13 C 0.014 3.986 14 N -0.312 5.312 15 C -0.034 4.034 16 C -0.081 4.081 17 C -0.117 4.117 18 C -0.140 4.140 19 C -0.141 4.141 20 C -0.140 4.140 21 C -0.132 4.132 22 C -0.068 4.068 23 C -0.008 4.008 24 C -0.097 4.097 25 C -0.179 4.179 26 C 0.070 3.930 27 F -0.126 7.126 28 C -0.180 4.180 29 C -0.088 4.088 30 N -0.080 5.080 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.182 0.818 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.167 0.833 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.192 0.808 46 H 0.149 0.851 47 H 0.150 0.850 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.826 -16.863 -5.446 21.875 hybrid contribution 1.018 1.112 -1.145 1.893 sum 13.844 -15.751 -6.591 21.981 Atomic orbital electron populations 1.69866 1.06148 1.27358 1.48777 1.24821 0.94853 0.98742 0.94213 0.86927 0.80439 0.83950 0.78888 1.19730 1.20452 1.18912 1.21069 0.87581 0.95799 1.53003 0.89546 1.20077 0.97638 0.72961 0.98205 1.48934 1.31118 1.10970 1.18797 1.22222 0.96080 0.94439 0.96684 1.19563 1.10475 0.94372 1.01480 1.20047 0.92253 0.91882 0.94382 1.60502 1.25016 1.20167 1.25519 1.20918 0.93350 0.93991 0.95162 1.19799 0.98738 0.95503 0.94045 1.21050 0.96862 0.94224 0.99535 1.21168 0.98569 0.99940 0.94317 1.21150 0.99991 0.96996 0.95928 1.21116 0.97914 0.95110 0.99832 1.21064 0.98746 0.99531 0.93905 1.20360 0.98116 0.92610 0.95688 1.17899 1.00795 0.90159 0.91981 1.22045 0.94674 0.89554 1.03395 1.21041 1.05285 0.99562 0.92054 1.17857 1.03583 0.80750 0.90798 1.91461 1.93949 1.45521 1.81648 1.20986 1.05272 0.91148 1.00585 1.21164 0.96371 0.97569 0.93711 1.77724 1.20642 0.95805 1.13835 0.92098 0.93930 0.93514 0.81792 0.90516 0.94757 0.83315 0.94309 0.90050 0.85897 0.86167 0.86353 0.86269 0.86355 0.80807 0.85132 0.85021 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.21 13.96 55.43 0.77 -25.44 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 19.69 27.47 -169.99 -4.67 15.02 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 7 C -0.54 -14.79 9.79 -34.44 -0.34 -15.13 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 C 0.23 5.21 5.33 -5.19 -0.03 5.19 16 10 N -0.32 -6.71 3.67 -62.58 -0.23 -6.94 16 11 C 0.06 0.93 11.33 -17.26 -0.20 0.73 16 12 C -0.25 -3.82 5.58 -104.76 -0.58 -4.40 16 13 C 0.14 1.62 5.10 -4.97 -0.03 1.60 16 14 N -0.68 -7.15 4.02 -116.34 -0.47 -7.61 16 15 C 0.09 0.80 5.81 -4.98 -0.03 0.77 16 16 C -0.08 -0.75 5.39 -104.62 -0.56 -1.31 16 17 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 18 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 19 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 20 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 21 C -0.11 -1.04 9.70 -39.58 -0.38 -1.43 16 22 C 0.10 1.74 6.74 -82.78 -0.56 1.18 16 23 C -0.01 -0.10 5.80 -104.89 -0.61 -0.71 16 24 C -0.08 -1.06 8.78 -39.27 -0.34 -1.41 16 25 C -0.16 -2.01 10.01 -39.56 -0.40 -2.40 16 26 C 0.09 1.19 7.30 -39.35 -0.29 0.91 16 27 F -0.15 -1.96 17.26 2.25 0.04 -1.92 16 28 C -0.16 -2.15 10.01 -39.56 -0.40 -2.54 16 29 C -0.07 -1.03 9.75 -39.27 -0.38 -1.42 16 30 N -0.26 -5.61 12.40 33.43 0.41 -5.19 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 33 H 0.05 0.96 7.50 -51.93 -0.39 0.57 16 34 H 0.16 2.13 8.06 -52.48 -0.42 1.71 16 35 H 0.08 0.85 7.78 -51.93 -0.40 0.45 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.35 3.92 8.72 -39.29 -0.34 3.58 16 38 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 39 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.18 2.26 4.72 -52.48 -0.25 2.02 16 46 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 48 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 410.37 15.07 6.18 6.18 Total: -1.00 -31.34 410.37 -11.17 -42.51 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.42 Total: 7.44 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -6.80 Total: -24.05 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.49 Total: -45.19 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.67 Total: 15.02 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.34 -11.17 -42.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002846483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.091 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds