Wall clock time and date at job start Tue Mar 31 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48493 * 109.47317 * 274.98782 * 3 2 1 5 5 H 1.48498 * 109.47114 * 34.99222 * 3 2 1 6 6 H 1.48502 * 109.46951 * 154.98649 * 3 2 1 7 7 C 1.39919 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00544 * 173.37636 * 7 2 1 9 9 C 1.39853 * 120.00016 * 353.64239 * 7 2 1 10 10 N 1.31496 * 125.22520 * 186.15534 * 9 7 2 11 11 C 1.31637 * 115.80906 * 180.02562 * 10 9 7 12 12 C 1.47181 * 122.57435 * 179.97438 * 11 10 9 13 13 C 1.37721 * 125.91783 * 0.02895 * 12 11 10 14 14 C 1.40042 * 106.79477 * 179.97438 * 13 12 11 15 15 C 1.36513 * 107.05277 * 359.97438 * 14 13 12 16 16 C 1.47528 * 125.68908 * 180.02562 * 15 14 13 17 17 C 1.39760 * 120.15298 * 129.99596 * 16 15 14 18 18 C 1.37860 * 119.86124 * 179.97438 * 17 16 15 19 19 C 1.38553 * 120.17730 * 359.97438 * 18 17 16 20 20 Cl 1.73603 * 119.84450 * 180.02562 * 19 18 17 21 21 C 1.38464 * 120.31070 * 0.04387 * 19 18 17 22 22 C 1.38038 * 120.13243 * 359.69768 * 21 19 18 23 23 Cl 1.73597 * 120.09222 * 180.30212 * 22 21 19 24 24 O 1.34669 * 108.62563 * 359.73575 * 15 14 13 25 25 C 1.37718 * 114.86059 * 0.02562 * 11 10 9 26 26 S 1.70989 * 109.06656 * 359.72824 * 25 11 10 27 27 H 0.97002 * 120.00030 * 359.97438 * 1 2 3 28 28 H 1.08002 * 126.60618 * 359.97438 * 13 12 11 29 29 H 1.08001 * 126.46869 * 179.97438 * 14 13 12 30 30 H 1.07993 * 120.06856 * 359.95901 * 17 16 15 31 31 H 1.07998 * 119.91264 * 180.02562 * 18 17 16 32 32 H 1.08000 * 119.93766 * 179.97438 * 21 19 18 33 33 H 1.08008 * 125.47068 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3848 2.1073 -1.3947 5 1 1.4969 2.6199 0.8029 6 1 3.5890 1.4120 0.5920 7 6 2.0083 -1.2117 -0.0005 8 1 3.0829 -1.2149 -0.1084 9 6 1.3155 -2.4192 0.1330 10 7 1.8729 -3.6034 0.2606 11 6 1.0425 -4.6186 0.3730 12 6 1.5050 -6.0078 0.5226 13 6 2.8177 -6.4222 0.5645 14 6 2.7979 -7.8143 0.7161 15 6 1.4873 -8.1935 0.7610 16 6 0.9962 -9.5763 0.9134 17 6 0.0325 -9.8765 1.8801 18 6 -0.4225 -11.1706 2.0170 19 6 0.0725 -12.1731 1.1987 20 17 -0.5072 -13.7997 1.3781 21 6 1.0275 -11.8839 0.2388 22 6 1.4883 -10.5915 0.0872 23 17 2.6800 -10.2286 -1.1219 24 8 0.7174 -7.0942 0.6495 25 6 -0.2923 -4.2813 0.3389 26 16 -0.4359 -2.5866 0.1620 27 1 -0.4850 0.8401 0.0004 28 1 3.6937 -5.7945 0.4941 29 1 3.6573 -8.4648 0.7844 30 1 -0.3546 -9.0964 2.5188 31 1 -1.1675 -11.4034 2.7635 32 1 1.4095 -12.6701 -0.3955 33 1 -1.1163 -4.9752 0.4167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003064025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:35 Heat of formation + Delta-G solvation = 42.934518 kcal Electronic energy + Delta-G solvation = -23187.928864 eV Core-core repulsion = 19357.663170 eV Total energy + Delta-G solvation = -3830.265694 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 364.978 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.02988 -39.55735 -37.52950 -37.04720 -36.51797 -34.25171 -32.87017 -32.01675 -31.27060 -29.90053 -27.60738 -26.40177 -23.95016 -23.28199 -22.26451 -21.20286 -20.46975 -18.82879 -17.92914 -17.84757 -16.69758 -16.30902 -15.68372 -15.40866 -15.26693 -15.09376 -14.55399 -14.21172 -14.18791 -13.42206 -13.18329 -12.82008 -12.70599 -12.49919 -12.37704 -12.33100 -12.19997 -11.93342 -11.84745 -11.48778 -11.35003 -11.32599 -11.07978 -10.69043 -10.55743 -9.86953 -9.70006 -9.59269 -9.34124 -9.13669 -8.30104 -7.99705 -7.97452 -7.20874 -6.90997 -4.87768 0.39475 0.74070 1.51450 1.69593 1.99243 2.43553 2.78992 2.87112 2.88910 2.95910 3.14921 3.27831 3.37017 3.59984 3.83535 4.15607 4.35525 4.52159 4.60454 4.82609 4.95274 5.02533 5.30711 5.35168 5.51785 5.55247 5.71289 5.82628 6.09614 6.15321 6.24914 6.42814 6.56193 6.71473 6.75539 7.03550 7.23722 7.54830 7.78785 8.19680 8.21427 9.48993 9.69187 Molecular weight = 364.98amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.001961 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.948187 B =14272.744446 C =15038.298941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.055 3.945 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.370 4.370 8 H 0.106 0.894 9 C 0.204 3.796 10 N -0.578 5.578 11 C 0.155 3.845 12 C 0.109 3.891 13 C -0.196 4.196 14 C -0.151 4.151 15 C -0.033 4.033 16 C 0.019 3.981 17 C -0.077 4.077 18 C -0.103 4.103 19 C -0.026 4.026 20 Cl -0.060 7.060 21 C -0.101 4.101 22 C -0.010 4.010 23 Cl -0.041 7.041 24 O -0.157 6.157 25 C -0.433 4.433 26 S 0.139 5.861 27 H 0.300 0.700 28 H 0.156 0.844 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 -16.986 2.191 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.167 4.167 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.413 4.413 8 H 0.124 0.876 9 C -0.050 4.050 10 N -0.301 5.301 11 C 0.016 3.984 12 C 0.056 3.944 13 C -0.217 4.217 14 C -0.171 4.171 15 C -0.083 4.083 16 C 0.018 3.982 17 C -0.095 4.095 18 C -0.122 4.122 19 C -0.053 4.053 20 Cl -0.031 7.031 21 C -0.120 4.120 22 C -0.038 4.038 23 Cl -0.012 7.012 24 O -0.052 6.052 25 C -0.579 4.579 26 S 0.400 5.600 27 H 0.113 0.887 28 H 0.173 0.827 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.933 -16.265 2.027 16.417 hybrid contribution 0.638 -0.522 0.023 0.825 sum -0.294 -16.787 2.050 16.914 Atomic orbital electron populations 1.68808 1.07709 1.31079 1.33396 1.26166 0.95139 1.02803 0.92640 0.85662 0.80187 0.78004 0.79502 1.18930 1.19586 1.17895 1.18938 0.96396 0.87339 1.38615 0.87598 1.23750 0.91419 0.93659 0.96126 1.67189 1.34075 0.96998 1.31790 1.17354 0.88693 0.87998 1.04355 1.20376 0.87819 0.85034 1.01206 1.21925 0.96966 0.93923 1.08883 1.21641 0.95399 0.95676 1.04338 1.19786 0.89280 0.85104 1.14094 1.17632 0.96889 0.88303 0.95416 1.21351 0.94904 0.96485 0.96772 1.21084 1.00393 0.91441 0.99274 1.20839 0.98662 0.86798 0.98964 1.98386 1.87728 1.20016 1.97002 1.20769 0.97146 0.95350 0.98784 1.20804 0.96045 0.93363 0.93549 1.98409 1.54449 1.94844 1.53495 1.84047 1.36621 1.13959 1.70598 1.26705 0.99031 1.05113 1.27048 1.84293 1.11296 0.93945 1.70449 0.88680 0.82660 0.83573 0.83499 0.83852 0.83459 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.91 10.66 55.55 0.59 -17.32 16 2 C 0.05 1.23 5.49 -17.33 -0.10 1.13 16 3 Si 0.94 16.71 29.57 -169.99 -5.03 11.69 16 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 5 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 6 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 7 C -0.37 -9.19 9.42 -38.35 -0.36 -9.55 16 8 H 0.11 2.53 7.85 -52.49 -0.41 2.12 16 9 C 0.20 5.40 7.10 -17.09 -0.12 5.28 16 10 N -0.58 -15.32 10.52 -9.64 -0.10 -15.42 16 11 C 0.15 3.87 6.69 -84.51 -0.57 3.31 16 12 C 0.11 2.40 7.12 -36.14 -0.26 2.15 16 13 C -0.20 -3.82 10.74 -39.09 -0.42 -4.24 16 14 C -0.15 -2.48 9.32 -39.53 -0.37 -2.85 16 15 C -0.03 -0.54 6.27 -36.42 -0.23 -0.77 16 16 C 0.02 0.25 5.79 -104.94 -0.61 -0.36 16 17 C -0.08 -0.86 9.79 -39.15 -0.38 -1.25 16 18 C -0.10 -0.96 9.81 -39.60 -0.39 -1.34 16 19 C -0.03 -0.24 6.33 -39.38 -0.25 -0.49 16 20 Cl -0.06 -0.50 28.95 -51.86 -1.50 -2.01 16 21 C -0.10 -1.00 9.59 -39.57 -0.38 -1.38 16 22 C -0.01 -0.12 6.34 -39.05 -0.25 -0.37 16 23 Cl -0.04 -0.50 26.61 -51.86 -1.38 -1.88 16 24 O -0.16 -3.12 10.61 3.37 0.04 -3.08 16 25 C -0.43 -10.57 10.94 30.54 0.33 -10.24 16 26 S 0.14 3.42 20.12 -107.50 -2.16 1.26 16 27 H 0.30 6.12 8.30 -40.82 -0.34 5.78 16 28 H 0.16 2.98 8.06 -52.49 -0.42 2.55 16 29 H 0.15 2.02 7.73 -52.49 -0.41 1.61 16 30 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.14 3.08 8.06 -52.48 -0.42 2.66 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -27.20 343.26 -10.78 -37.97 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -2.07 Total: 4.59 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -4.34 Total: -20.97 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.49 Total: -32.74 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -2.16 Total: 1.26 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -2.88 Total: -3.89 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.20 -10.78 -37.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003064025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.907 kcal (2) G-P(sol) polarization free energy of solvation -27.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds