Wall clock time and date at job start Tue Mar 31 2020 07:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47413 * 2 1 4 4 C 1.39623 * 119.99884 * 180.02562 * 3 2 1 5 5 C 1.38755 * 120.12369 * 359.72091 * 4 3 2 6 6 C 1.38172 * 120.00919 * 180.28006 * 5 4 3 7 7 C 1.38462 * 120.25386 * 359.97438 * 6 5 4 8 8 S 1.76202 * 119.88029 * 179.97438 * 7 6 5 9 9 O 1.42097 * 104.27524 * 26.08995 * 8 7 6 10 10 O 1.42099 * 104.27443 * 153.94927 * 8 7 6 11 11 C 1.81398 * 104.44778 * 270.01956 * 8 7 6 12 12 F 1.39899 * 109.47062 * 59.99712 * 11 8 7 13 13 F 1.39896 * 109.47461 * 180.02562 * 11 8 7 14 14 F 1.39895 * 109.47299 * 300.00120 * 11 8 7 15 15 C 1.38091 * 120.24039 * 0.02562 * 7 6 5 16 16 C 1.38918 * 119.99354 * 359.97438 * 15 7 6 17 17 N 1.39480 * 120.12763 * 179.97438 * 16 15 7 18 18 C 1.34769 * 120.00069 * 325.25655 * 17 16 15 19 19 O 1.21791 * 120.00044 * 4.50593 * 18 17 16 20 20 C 1.41724 * 119.99835 * 184.51323 * 18 17 16 21 21 H 1.08001 * 119.99871 * 359.97438 * 20 18 17 22 22 C 1.40141 * 119.99656 * 179.97438 * 20 18 17 23 23 N 1.30625 * 120.00537 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 119.99729 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47200 * 89.99961 * 24 22 20 26 26 H 1.48502 * 109.47333 * 210.00561 * 24 22 20 27 27 H 1.48505 * 109.47286 * 330.00209 * 24 22 20 28 28 H 1.08997 * 109.47484 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46956 * 300.00208 * 1 2 3 30 30 H 1.09004 * 109.47418 * 59.99631 * 1 2 3 31 31 H 1.09003 * 109.46956 * 239.99792 * 2 1 3 32 32 H 1.09000 * 109.46978 * 120.00212 * 2 1 3 33 33 H 0.96997 * 119.99811 * 359.97438 * 3 2 1 34 34 H 1.08005 * 119.99977 * 0.25553 * 5 4 3 35 35 H 1.08001 * 119.87825 * 180.02562 * 6 5 4 36 36 H 1.08004 * 119.99922 * 180.02562 * 15 7 6 37 37 H 0.97000 * 119.99628 * 145.24759 * 17 16 15 38 38 H 0.96994 * 120.00557 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3911 1.6362 -0.0005 5 6 4.2950 0.5835 0.0048 6 6 5.6529 0.8386 0.0101 7 6 6.1177 2.1429 0.0096 8 16 7.8515 2.4569 0.0170 9 8 8.4195 1.3011 -0.5836 10 8 7.9786 3.7355 -0.5898 11 6 8.2887 2.5406 1.7756 12 9 7.9755 1.3246 2.3923 13 9 9.6593 2.7897 1.9040 14 9 7.5684 3.5725 2.3866 15 6 5.2274 3.1984 0.0043 16 6 3.8600 2.9536 -0.0010 17 7 2.9582 4.0177 -0.0058 18 6 3.2515 5.1525 0.6594 19 8 4.3374 5.2806 1.1958 20 6 2.2962 6.1966 0.7348 21 1 1.3334 6.0831 0.2589 22 6 2.6010 7.3764 1.4270 23 7 3.7657 7.5140 2.0022 24 14 1.3422 8.7530 1.5258 25 1 0.4922 8.5611 2.7283 26 1 2.0429 10.0590 1.6182 27 1 0.4905 8.7333 0.3094 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3881 2.1184 -0.0004 34 1 3.9371 -0.4356 0.0052 35 1 6.3546 0.0176 0.0138 36 1 5.5943 4.2143 0.0035 37 1 2.1201 3.9409 -0.4881 38 1 3.9768 8.3307 2.4810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003219671.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:05 Heat of formation + Delta-G solvation = -201.111983 kcal Electronic energy + Delta-G solvation = -31806.817263 eV Core-core repulsion = 26748.934127 eV Total energy + Delta-G solvation = -5057.883136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.069 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.13195 -47.86269 -47.70471 -39.86714 -37.53101 -37.35858 -36.39032 -36.02295 -33.71413 -32.54195 -31.41127 -29.64211 -28.20337 -26.91754 -26.44176 -23.92796 -22.43769 -21.75212 -20.30224 -20.05255 -18.80203 -18.66965 -18.59491 -18.10113 -17.27089 -16.82729 -16.11613 -15.61791 -15.57711 -15.25507 -15.07737 -14.78932 -14.62534 -14.49666 -14.23633 -14.14871 -14.01993 -13.80804 -13.78754 -13.61071 -13.29024 -13.07406 -12.65134 -12.48101 -12.42436 -12.35833 -12.27649 -11.98553 -11.81323 -11.52248 -11.27374 -11.16905 -11.14677 -10.76840 -10.70128 -10.40006 -10.28908 -9.45569 -8.95549 -8.14451 -7.77390 -6.95610 -6.42559 -4.96831 -0.82198 1.23140 1.76666 2.36206 2.92862 3.01287 3.09064 3.12294 3.28933 3.31110 3.37591 3.78770 3.89899 3.94524 4.21547 4.36796 4.48698 4.76485 4.87920 4.96456 5.15355 5.26558 5.47847 5.57316 5.68769 5.69070 5.74266 5.82890 6.09541 6.21522 6.38899 6.46389 6.98446 7.17854 7.21282 7.54862 7.73496 7.92929 8.05732 8.74495 9.16973 10.31771 10.50937 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.007843 B = 0.004474 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3569.329261 B = 6256.330825 C = 9040.138543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.118 3.882 3 N -0.738 5.738 4 C 0.233 3.767 5 C -0.200 4.200 6 C -0.004 4.004 7 C -0.685 4.685 8 S 2.488 3.512 9 O -0.880 6.880 10 O -0.862 6.862 11 C -0.026 4.026 12 F -0.163 7.163 13 F -0.170 7.170 14 F -0.143 7.143 15 C 0.013 3.987 16 C 0.107 3.893 17 N -0.699 5.699 18 C 0.543 3.457 19 O -0.563 6.563 20 C -0.538 4.538 21 H 0.069 0.931 22 C 0.088 3.912 23 N -0.743 5.743 24 Si 0.912 3.088 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.263 1.263 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.403 0.597 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.168 0.832 37 H 0.387 0.613 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 -14.177 -3.661 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.368 5.368 4 C 0.124 3.876 5 C -0.225 4.225 6 C -0.026 4.026 7 C -0.783 4.783 8 S 2.654 3.346 9 O -0.877 6.877 10 O -0.860 6.860 11 C -0.151 4.151 12 F -0.145 7.145 13 F -0.152 7.152 14 F -0.124 7.124 15 C -0.011 4.011 16 C 0.004 3.996 17 N -0.345 5.345 18 C 0.353 3.647 19 O -0.447 6.447 20 C -0.573 4.573 21 H 0.087 0.913 22 C -0.135 4.135 23 N -0.370 5.370 24 Si 0.736 3.264 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.187 1.187 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.185 0.815 37 H 0.221 0.779 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.189 -13.955 -3.606 14.414 hybrid contribution -1.801 0.804 1.082 2.250 sum -1.612 -13.151 -2.524 13.487 Atomic orbital electron populations 1.21980 0.94522 1.02960 1.02865 1.21332 0.94605 0.83299 1.01344 1.44756 1.03401 1.07667 1.80954 1.18123 0.84273 0.92639 0.92581 1.20375 0.92164 0.97465 1.12455 1.20457 0.95776 0.93840 0.92479 1.29036 1.19447 1.00907 1.28937 1.06962 0.77364 0.76216 0.74067 1.93610 1.78395 1.49588 1.66084 1.93676 1.86263 1.40890 1.65125 1.35357 0.79911 0.78374 1.21423 1.93224 1.92222 1.42658 1.86369 1.93216 1.30590 1.93951 1.97442 1.93390 1.76102 1.56927 1.86018 1.21097 0.91124 0.99285 0.89597 1.17406 0.90546 0.86105 1.05557 1.43975 1.20378 1.14901 1.55275 1.17077 0.88808 0.80345 0.78496 1.90654 1.24943 1.79216 1.49856 1.19967 1.01602 1.00075 1.35644 0.91263 1.25746 0.95450 0.98993 0.93359 1.69988 1.19665 1.25321 1.21976 0.86290 0.80727 0.79919 0.79417 1.19600 1.20161 1.18733 0.90919 0.91809 0.91890 0.91986 0.92046 0.76127 0.85209 0.84497 0.81505 0.77945 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.03 37.16 0.37 -0.78 16 2 C 0.12 1.04 5.63 -4.04 -0.02 1.02 16 3 N -0.74 -9.00 5.70 -58.44 -0.33 -9.34 16 4 C 0.23 3.59 6.68 -83.52 -0.56 3.03 16 5 C -0.20 -2.73 9.31 -39.41 -0.37 -3.10 16 6 C 0.00 -0.05 9.46 -39.52 -0.37 -0.43 16 7 C -0.69 -11.71 5.65 -39.55 -0.22 -11.93 16 8 S 2.49 40.12 5.19 -107.50 -0.56 39.56 16 9 O -0.88 -13.65 17.11 -57.54 -0.98 -14.63 16 10 O -0.86 -16.13 17.11 -57.54 -0.98 -17.12 16 11 C -0.03 -0.43 3.54 101.05 0.36 -0.07 16 12 F -0.16 -2.51 17.35 2.25 0.04 -2.47 16 13 F -0.17 -2.67 17.36 2.25 0.04 -2.63 16 14 F -0.14 -2.77 17.35 2.25 0.04 -2.73 16 15 C 0.01 0.27 8.11 -39.38 -0.32 -0.05 16 16 C 0.11 2.06 6.33 -83.53 -0.53 1.53 16 17 N -0.70 -14.41 4.99 -12.29 -0.06 -14.47 16 18 C 0.54 14.23 7.41 -14.93 -0.11 14.11 16 19 O -0.56 -16.75 12.29 5.11 0.06 -16.68 16 20 C -0.54 -13.90 9.31 -37.54 -0.35 -14.25 16 21 H 0.07 1.60 7.85 -52.49 -0.41 1.19 16 22 C 0.09 2.29 5.50 -17.35 -0.10 2.19 16 23 N -0.74 -20.89 11.73 55.56 0.65 -20.24 16 24 Si 0.91 18.76 29.56 -169.99 -5.02 13.74 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 27 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.49 7.96 -51.93 -0.41 0.08 16 32 H 0.06 0.53 7.94 -51.93 -0.41 0.12 16 33 H 0.40 4.82 7.09 -40.82 -0.29 4.53 16 34 H 0.13 1.34 6.73 -52.48 -0.35 0.99 16 35 H 0.14 1.57 7.56 -52.49 -0.40 1.17 16 36 H 0.17 3.94 5.70 -52.48 -0.30 3.64 16 37 H 0.39 6.65 7.68 -40.82 -0.31 6.34 16 38 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -33.47 355.24 -7.27 -40.74 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -3.29 Total: 9.65 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -2.22 Total: -8.71 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.26 Total: -44.06 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -1.91 Total: -48.43 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.12 Total: -7.84 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Atomic # 16 Polarization: 40.12 SS G_CDS: -0.56 Total: 39.56 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.47 -7.27 -40.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003219671.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.373 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds