Wall clock time and date at job start Tue Mar 31 2020 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99778 * 2 1 4 4 H 1.48497 * 109.47319 * 269.99811 * 3 2 1 5 5 H 1.48497 * 109.47380 * 30.00313 * 3 2 1 6 6 H 1.48502 * 109.46764 * 150.00005 * 3 2 1 7 7 C 1.37871 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00464 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99880 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47389 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99971 * 89.99759 * 10 9 7 12 12 O 1.21289 * 120.00101 * 5.21833 * 11 10 9 13 13 C 1.50707 * 120.00121 * 185.22306 * 11 10 9 14 14 O 1.42898 * 109.47041 * 185.13346 * 13 11 10 15 15 C 1.34907 * 116.99755 * 179.97438 * 14 13 11 16 16 O 1.21620 * 119.99893 * 0.02562 * 15 14 13 17 17 C 1.46235 * 119.99760 * 179.97438 * 15 14 13 18 18 C 1.34920 * 119.99769 * 180.27759 * 17 15 14 19 19 C 1.47172 * 120.00069 * 179.72784 * 18 17 15 20 20 C 1.39859 * 120.16798 * 359.72232 * 19 18 17 21 21 C 1.37892 * 119.81667 * 179.74517 * 20 19 18 22 22 C 1.38398 * 120.17686 * 0.53367 * 21 20 19 23 23 C 1.38407 * 120.34628 * 359.74349 * 22 21 20 24 24 C 1.37885 * 120.17571 * 359.97438 * 23 22 21 25 25 C 1.39925 * 120.00260 * 270.00299 * 10 9 7 26 26 C 1.38867 * 120.07405 * 112.46409 * 25 10 9 27 27 C 1.38114 * 119.93051 * 179.74553 * 26 25 10 28 28 C 1.38284 * 120.06554 * 0.53381 * 27 26 25 29 29 C 1.38278 * 120.14326 * 359.74817 * 28 27 26 30 30 C 1.38109 * 120.07454 * 359.97122 * 29 28 27 31 31 H 0.97000 * 120.00007 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47288 * 59.99623 * 9 7 2 33 33 H 1.09002 * 109.46832 * 300.00262 * 9 7 2 34 34 H 1.08999 * 109.47101 * 65.13483 * 13 11 10 35 35 H 1.09005 * 109.46680 * 305.13405 * 13 11 10 36 36 H 1.07998 * 120.00304 * 0.02562 * 17 15 14 37 37 H 1.07998 * 119.99871 * 359.72590 * 18 17 15 38 38 H 1.07992 * 120.08921 * 0.02562 * 20 19 18 39 39 H 1.08007 * 119.90886 * 180.29685 * 21 20 19 40 40 H 1.07999 * 119.82801 * 179.76017 * 22 21 20 41 41 H 1.08006 * 119.91153 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.08633 * 180.02562 * 24 23 22 43 43 H 1.08005 * 120.03355 * 0.03239 * 26 25 10 44 44 H 1.07991 * 119.96829 * 180.27891 * 27 26 25 45 45 H 1.08006 * 119.92684 * 179.71903 * 28 27 26 46 46 H 1.08007 * 119.96495 * 179.97438 * 29 28 27 47 47 H 1.07994 * 120.03769 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 4.2249 -3.2103 -1.1673 12 8 4.1144 -2.6100 -2.2154 13 6 4.6137 -4.6663 -1.1702 14 8 4.9118 -5.0771 -2.5061 15 6 5.2804 -6.3626 -2.6837 16 8 5.3461 -7.1138 -1.7294 17 6 5.5998 -6.8531 -4.0238 18 6 5.9629 -8.1402 -4.2022 19 6 6.2786 -8.6355 -5.5516 20 6 6.1977 -7.7765 -6.6524 21 6 6.5001 -8.2468 -7.9128 22 6 6.8723 -9.5677 -8.0917 23 6 6.9491 -10.4255 -7.0081 24 6 6.6554 -9.9690 -5.7406 25 6 4.2326 -3.2352 1.2116 26 6 3.4340 -4.3085 1.5841 27 6 3.6696 -4.9610 2.7783 28 6 4.6926 -4.5397 3.6079 29 6 5.4859 -3.4676 3.2426 30 6 5.2591 -2.8144 2.0471 31 1 -0.4850 0.8400 0.0004 32 1 3.8745 -0.6808 0.8905 33 1 3.8751 -0.6796 -0.8895 34 1 3.7886 -5.2635 -0.7821 35 1 5.4927 -4.8089 -0.5415 36 1 5.5410 -6.1862 -4.8712 37 1 6.0220 -8.8071 -3.3547 38 1 5.9035 -6.7465 -6.5149 39 1 6.4428 -7.5835 -8.7632 40 1 7.1042 -9.9311 -9.0819 41 1 7.2399 -11.4551 -7.1559 42 1 6.7162 -10.6394 -4.8961 43 1 2.6323 -4.6355 0.9383 44 1 3.0518 -5.7986 3.0664 45 1 4.8720 -5.0488 4.5434 46 1 6.2838 -3.1406 3.8930 47 1 5.8793 -1.9774 1.7622 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003263103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:42 Heat of formation + Delta-G solvation = -35.010659 kcal Electronic energy + Delta-G solvation = -30700.957204 eV Core-core repulsion = 26393.781651 eV Total energy + Delta-G solvation = -4307.175553 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -40.73068 -39.89868 -39.50373 -38.21507 -36.60435 -35.00015 -34.48844 -32.68460 -31.43844 -30.87545 -30.38024 -29.80892 -29.01834 -27.19228 -24.89833 -23.14503 -22.76842 -22.57936 -22.09080 -21.66981 -19.74094 -19.20877 -18.25260 -17.49597 -17.13259 -17.04806 -16.61671 -16.32608 -16.03416 -15.53789 -15.51196 -15.08410 -15.00040 -14.35997 -14.21969 -13.99466 -13.91813 -13.80191 -13.47504 -13.37703 -13.23502 -12.85510 -12.71973 -12.48913 -12.39912 -12.26404 -11.85801 -11.70234 -11.40046 -11.35321 -11.19439 -10.90788 -10.79110 -10.71600 -10.63098 -10.60335 -10.26339 -9.63406 -9.55022 -9.39127 -8.77108 -8.71106 -8.70611 -8.62012 -7.83446 -6.13499 -4.13461 0.07170 0.98452 1.45633 1.52610 1.56883 2.43220 2.80137 3.00601 3.26284 3.31805 3.33624 3.48149 3.63006 3.93687 4.31656 4.35032 4.36991 4.53030 4.64393 4.69367 4.83663 4.92575 4.99274 5.05378 5.07932 5.11795 5.18837 5.20256 5.24688 5.31165 5.47642 5.53350 5.59832 5.67411 5.73798 5.84671 5.91236 6.04188 6.07448 6.17879 6.20790 6.32340 6.49510 6.51585 6.59739 6.65975 6.66972 6.83253 6.98454 7.20213 7.50710 7.66575 8.02280 8.37542 8.65143 8.88349 9.44834 10.99525 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.010662 B = 0.002073 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.632856 B =13501.126088 C =15441.890468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.075 3.925 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.219 3.781 10 N -0.550 5.550 11 C 0.520 3.480 12 O -0.505 6.505 13 C 0.051 3.949 14 O -0.321 6.321 15 C 0.496 3.504 16 O -0.512 6.512 17 C -0.182 4.182 18 C -0.012 4.012 19 C -0.078 4.078 20 C -0.097 4.097 21 C -0.122 4.122 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.093 4.093 25 C 0.150 3.850 26 C -0.121 4.121 27 C -0.106 4.106 28 C -0.129 4.129 29 C -0.110 4.110 30 C -0.124 4.124 31 H 0.266 0.734 32 H 0.036 0.964 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.883 -19.412 -6.422 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.094 0.906 9 C 0.100 3.900 10 N -0.280 5.280 11 C 0.306 3.694 12 O -0.379 6.379 13 C -0.027 4.027 14 O -0.236 6.236 15 C 0.343 3.657 16 O -0.403 6.403 17 C -0.201 4.201 18 C -0.031 4.031 19 C -0.078 4.078 20 C -0.115 4.115 21 C -0.140 4.140 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.111 4.111 25 C 0.059 3.941 26 C -0.140 4.140 27 C -0.125 4.125 28 C -0.148 4.148 29 C -0.128 4.128 30 C -0.144 4.144 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.648 -19.091 -6.745 25.589 hybrid contribution 0.075 0.954 0.291 1.001 sum 15.723 -18.136 -6.454 24.856 Atomic orbital electron populations 1.69884 1.06148 1.27101 1.49979 1.24813 0.94791 0.98897 0.94282 0.86870 0.80232 0.83794 0.78970 1.19730 1.20903 1.19016 1.21233 0.88736 0.95072 1.52027 0.90572 1.19865 0.96089 0.75973 0.98051 1.45485 1.64215 1.15988 1.02293 1.19747 0.78245 0.87259 0.84112 1.90721 1.49853 1.67024 1.30314 1.22517 1.03096 0.95028 0.82037 1.86217 1.77721 1.28314 1.31369 1.21278 0.74015 0.80120 0.90325 1.90877 1.49554 1.56805 1.43024 1.22207 1.06282 0.97173 0.94444 1.22437 0.90074 0.94799 0.95771 1.18976 1.02144 0.94282 0.92449 1.21565 0.97845 0.99942 0.92161 1.21162 0.99589 0.95991 0.97260 1.21364 0.98333 0.93788 0.99077 1.21128 1.00562 1.00055 0.92566 1.21399 0.97502 0.94439 0.97721 1.17755 0.94486 0.93808 0.88073 1.21416 0.98312 0.96870 0.97431 1.21010 0.97780 0.99716 0.93954 1.21109 0.96392 0.97565 0.99686 1.20969 0.99756 0.96047 0.96054 1.21268 0.97203 1.00789 0.95112 0.92433 0.94599 0.93796 0.88268 0.88817 0.83767 0.84279 0.84973 0.85467 0.85798 0.85605 0.85312 0.85630 0.85817 0.86156 0.85919 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.96 55.43 0.77 -26.59 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 8 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 9 C 0.22 5.36 4.21 -5.19 -0.02 5.33 16 10 N -0.55 -11.65 2.51 -114.73 -0.29 -11.94 16 11 C 0.52 10.99 7.65 -10.98 -0.08 10.91 16 12 O -0.51 -12.53 16.06 -14.31 -0.23 -12.76 16 13 C 0.05 0.87 4.37 36.01 0.16 1.03 16 14 O -0.32 -5.45 9.66 -47.81 -0.46 -5.91 16 15 C 0.50 7.22 7.87 33.94 0.27 7.48 16 16 O -0.51 -8.16 16.00 -19.36 -0.31 -8.47 16 17 C -0.18 -2.01 9.54 -37.55 -0.36 -2.37 16 18 C -0.01 -0.12 9.46 -37.13 -0.35 -0.47 16 19 C -0.08 -0.66 5.87 -105.06 -0.62 -1.28 16 20 C -0.10 -0.78 9.41 -39.10 -0.37 -1.14 16 21 C -0.12 -0.84 10.03 -39.65 -0.40 -1.24 16 22 C -0.11 -0.67 10.04 -39.46 -0.40 -1.07 16 23 C -0.13 -0.78 10.03 -39.65 -0.40 -1.18 16 24 C -0.09 -0.66 9.80 -39.11 -0.38 -1.04 16 25 C 0.15 2.69 4.43 -83.69 -0.37 2.32 16 26 C -0.12 -1.97 8.45 -39.39 -0.33 -2.30 16 27 C -0.11 -1.43 10.04 -39.61 -0.40 -1.82 16 28 C -0.13 -1.58 10.04 -39.55 -0.40 -1.97 16 29 C -0.11 -1.40 10.04 -39.61 -0.40 -1.79 16 30 C -0.12 -1.91 9.66 -39.39 -0.38 -2.29 16 31 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.04 0.84 6.90 -51.93 -0.36 0.49 16 33 H 0.04 1.12 6.78 -51.93 -0.35 0.77 16 34 H 0.10 1.60 6.88 -51.93 -0.36 1.24 16 35 H 0.09 1.44 7.85 -51.93 -0.41 1.03 16 36 H 0.14 1.36 6.08 -52.49 -0.32 1.04 16 37 H 0.14 1.24 7.52 -52.49 -0.39 0.85 16 38 H 0.13 0.93 6.17 -52.49 -0.32 0.61 16 39 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 40 H 0.12 0.51 8.06 -52.49 -0.42 0.08 16 41 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 42 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 43 H 0.13 2.09 7.55 -52.48 -0.40 1.69 16 44 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 46 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 47 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 409.32 15.07 6.17 6.17 Total: -1.00 -35.57 409.32 -10.56 -46.13 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.88 Total: 3.02 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -5.67 Total: -6.38 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.49 Total: -38.53 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -1.00 Total: -27.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.57 -10.56 -46.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003263103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.120 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds