Wall clock time and date at job start Tue Mar 31 2020 06:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99778 * 2 1 4 4 H 1.48497 * 109.47319 * 269.99811 * 3 2 1 5 5 H 1.48497 * 109.47380 * 30.00313 * 3 2 1 6 6 H 1.48502 * 109.46764 * 150.00005 * 3 2 1 7 7 C 1.37871 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00464 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99880 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47389 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99971 * 89.99759 * 10 9 7 12 12 O 1.21289 * 120.00101 * 5.21833 * 11 10 9 13 13 C 1.50707 * 120.00121 * 185.22306 * 11 10 9 14 14 O 1.42898 * 109.47041 * 185.13346 * 13 11 10 15 15 C 1.34907 * 116.99755 * 179.97438 * 14 13 11 16 16 O 1.21620 * 119.99893 * 0.02562 * 15 14 13 17 17 C 1.46235 * 119.99760 * 179.97438 * 15 14 13 18 18 C 1.34920 * 119.99769 * 180.27759 * 17 15 14 19 19 C 1.47172 * 120.00069 * 179.72784 * 18 17 15 20 20 C 1.39859 * 120.16798 * 359.72232 * 19 18 17 21 21 C 1.37892 * 119.81667 * 179.74517 * 20 19 18 22 22 C 1.38398 * 120.17686 * 0.53367 * 21 20 19 23 23 C 1.38407 * 120.34628 * 359.74349 * 22 21 20 24 24 C 1.37885 * 120.17571 * 359.97438 * 23 22 21 25 25 C 1.39925 * 120.00260 * 270.00299 * 10 9 7 26 26 C 1.38867 * 120.07405 * 112.46409 * 25 10 9 27 27 C 1.38114 * 119.93051 * 179.74553 * 26 25 10 28 28 C 1.38284 * 120.06554 * 0.53381 * 27 26 25 29 29 C 1.38278 * 120.14326 * 359.74817 * 28 27 26 30 30 C 1.38109 * 120.07454 * 359.97122 * 29 28 27 31 31 H 0.97000 * 120.00007 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47288 * 59.99623 * 9 7 2 33 33 H 1.09002 * 109.46832 * 300.00262 * 9 7 2 34 34 H 1.08999 * 109.47101 * 65.13483 * 13 11 10 35 35 H 1.09005 * 109.46680 * 305.13405 * 13 11 10 36 36 H 1.07998 * 120.00304 * 0.02562 * 17 15 14 37 37 H 1.07998 * 119.99871 * 359.72590 * 18 17 15 38 38 H 1.07992 * 120.08921 * 0.02562 * 20 19 18 39 39 H 1.08007 * 119.90886 * 180.29685 * 21 20 19 40 40 H 1.07999 * 119.82801 * 179.76017 * 22 21 20 41 41 H 1.08006 * 119.91153 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.08633 * 180.02562 * 24 23 22 43 43 H 1.08005 * 120.03355 * 0.03239 * 26 25 10 44 44 H 1.07991 * 119.96829 * 180.27891 * 27 26 25 45 45 H 1.08006 * 119.92684 * 179.71903 * 28 27 26 46 46 H 1.08007 * 119.96495 * 179.97438 * 29 28 27 47 47 H 1.07994 * 120.03769 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 4.2249 -3.2103 -1.1673 12 8 4.1144 -2.6100 -2.2154 13 6 4.6137 -4.6663 -1.1702 14 8 4.9118 -5.0771 -2.5061 15 6 5.2804 -6.3626 -2.6837 16 8 5.3461 -7.1138 -1.7294 17 6 5.5998 -6.8531 -4.0238 18 6 5.9629 -8.1402 -4.2022 19 6 6.2786 -8.6355 -5.5516 20 6 6.1977 -7.7765 -6.6524 21 6 6.5001 -8.2468 -7.9128 22 6 6.8723 -9.5677 -8.0917 23 6 6.9491 -10.4255 -7.0081 24 6 6.6554 -9.9690 -5.7406 25 6 4.2326 -3.2352 1.2116 26 6 3.4340 -4.3085 1.5841 27 6 3.6696 -4.9610 2.7783 28 6 4.6926 -4.5397 3.6079 29 6 5.4859 -3.4676 3.2426 30 6 5.2591 -2.8144 2.0471 31 1 -0.4850 0.8400 0.0004 32 1 3.8745 -0.6808 0.8905 33 1 3.8751 -0.6796 -0.8895 34 1 3.7886 -5.2635 -0.7821 35 1 5.4927 -4.8089 -0.5415 36 1 5.5410 -6.1862 -4.8712 37 1 6.0220 -8.8071 -3.3547 38 1 5.9035 -6.7465 -6.5149 39 1 6.4428 -7.5835 -8.7632 40 1 7.1042 -9.9311 -9.0819 41 1 7.2399 -11.4551 -7.1559 42 1 6.7162 -10.6394 -4.8961 43 1 2.6323 -4.6355 0.9383 44 1 3.0518 -5.7986 3.0664 45 1 4.8720 -5.0488 4.5434 46 1 6.2838 -3.1406 3.8930 47 1 5.8793 -1.9774 1.7622 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003263103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:41 Heat of formation + Delta-G solvation = -53.212722 kcal Electronic energy + Delta-G solvation = -30701.746505 eV Core-core repulsion = 26393.781651 eV Total energy + Delta-G solvation = -4307.964853 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.05254 -41.21694 -40.11384 -39.57304 -37.85955 -36.63213 -35.24688 -34.81385 -32.11096 -31.94981 -31.57020 -31.01049 -30.26308 -28.86462 -25.85210 -24.50042 -23.90289 -23.59551 -23.36372 -22.61842 -20.85739 -20.46811 -19.28186 -19.18486 -18.84382 -17.99949 -17.91308 -17.41937 -17.30947 -17.01047 -16.55213 -16.17171 -16.00676 -15.73847 -15.45908 -15.39568 -14.91781 -14.57897 -14.49881 -14.37047 -14.29734 -14.17733 -14.04850 -13.91758 -13.81462 -13.53780 -13.24234 -13.16164 -12.61470 -12.38261 -12.26534 -12.22485 -12.02514 -11.95242 -11.94062 -11.81217 -11.78475 -11.49760 -11.19976 -10.87451 -10.20965 -9.91102 -9.87838 -9.36193 -9.33329 -8.38049 -6.44629 -0.68316 0.27749 0.45596 0.46749 0.77059 1.15366 1.31125 1.34575 1.35601 1.42867 1.84785 2.21072 2.27491 2.80278 2.91749 2.95621 3.23329 3.49295 3.75217 3.80461 3.82952 3.97741 4.04747 4.06956 4.08046 4.15684 4.28672 4.31500 4.47433 4.51146 4.52209 4.55211 4.62581 4.75487 4.80995 4.88955 4.92236 5.09813 5.11297 5.12688 5.19602 5.29133 5.33608 5.48515 5.51156 5.56588 5.58472 5.59484 5.62248 5.98526 6.01091 6.14562 6.39520 6.54537 6.55299 6.97962 7.19503 8.78602 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.010662 B = 0.002073 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.632856 B =13501.126088 C =15441.890468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.014 3.986 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.238 1.238 7 C -0.540 4.540 8 H 0.029 0.971 9 C 0.228 3.772 10 N -0.551 5.551 11 C 0.513 3.487 12 O -0.555 6.555 13 C 0.067 3.933 14 O -0.341 6.341 15 C 0.497 3.503 16 O -0.532 6.532 17 C -0.211 4.211 18 C 0.021 3.979 19 C -0.104 4.104 20 C -0.108 4.108 21 C -0.134 4.134 22 C -0.104 4.104 23 C -0.131 4.131 24 C -0.094 4.094 25 C 0.111 3.889 26 C -0.140 4.140 27 C -0.106 4.106 28 C -0.115 4.115 29 C -0.101 4.101 30 C -0.132 4.132 31 H 0.270 0.730 32 H 0.053 0.947 33 H 0.032 0.968 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.106 0.894 44 H 0.148 0.852 45 H 0.161 0.839 46 H 0.160 0.840 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.718 -20.868 -5.322 28.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.184 4.184 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.161 1.161 7 C -0.579 4.579 8 H 0.048 0.952 9 C 0.108 3.892 10 N -0.279 5.279 11 C 0.301 3.699 12 O -0.433 6.433 13 C -0.011 4.011 14 O -0.257 6.257 15 C 0.346 3.654 16 O -0.424 6.424 17 C -0.230 4.230 18 C 0.002 3.998 19 C -0.104 4.104 20 C -0.126 4.126 21 C -0.152 4.152 22 C -0.122 4.122 23 C -0.149 4.149 24 C -0.112 4.112 25 C 0.021 3.979 26 C -0.160 4.160 27 C -0.124 4.124 28 C -0.133 4.133 29 C -0.119 4.119 30 C -0.151 4.151 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.172 0.828 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.163 0.837 43 H 0.124 0.876 44 H 0.166 0.834 45 H 0.179 0.821 46 H 0.178 0.822 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 18.504 -20.592 -5.607 28.247 hybrid contribution -0.806 1.144 -0.084 1.402 sum 17.698 -19.448 -5.691 26.905 Atomic orbital electron populations 1.70036 1.08141 1.28477 1.51322 1.25820 0.95740 1.03272 0.93604 0.85740 0.79905 0.78257 0.79291 1.19685 1.19742 1.16135 1.21419 0.91020 0.93496 1.51939 0.95247 1.19527 0.93259 0.78443 0.97960 1.45374 1.63540 1.15085 1.03898 1.20446 0.77235 0.88724 0.83457 1.90673 1.52274 1.68416 1.31942 1.22283 1.03949 0.92075 0.82769 1.86223 1.78316 1.29987 1.31135 1.21832 0.73193 0.78982 0.91435 1.90846 1.50902 1.56811 1.43859 1.22136 1.09666 0.98248 0.92911 1.22597 0.86694 0.93865 0.96609 1.19037 1.04204 0.95290 0.91863 1.21748 0.97931 1.00186 0.92762 1.21437 0.99572 0.96869 0.97291 1.21752 0.96721 0.93401 1.00345 1.21480 0.99963 1.01325 0.92094 1.21686 0.96553 0.93998 0.98947 1.18050 0.96896 0.95275 0.87726 1.21417 0.98262 0.97489 0.98816 1.21339 0.98474 0.99936 0.92694 1.21609 0.94600 0.96718 1.00391 1.21408 1.00211 0.95275 0.95027 1.21438 0.96622 1.01327 0.95743 0.92087 0.92867 0.95014 0.87778 0.86913 0.82802 0.83820 0.84900 0.83945 0.83414 0.83162 0.83673 0.87613 0.83383 0.82129 0.82202 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.90 13.96 21.45 0.30 -59.60 16 2 C 0.01 0.85 5.47 84.65 0.46 1.32 16 3 Si 0.95 44.64 27.47 68.60 1.88 46.52 16 4 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 7 C -0.54 -32.53 9.94 25.60 0.25 -32.27 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 9 C 0.23 11.53 4.21 85.63 0.36 11.89 16 10 N -0.55 -24.40 2.51 -635.29 -1.59 -25.99 16 11 C 0.51 23.05 7.65 87.66 0.67 23.72 16 12 O -0.56 -29.40 16.06 15.93 0.26 -29.15 16 13 C 0.07 2.40 4.37 71.24 0.31 2.71 16 14 O -0.34 -12.24 9.66 -51.77 -0.50 -12.74 16 15 C 0.50 15.05 7.87 69.90 0.55 15.60 16 16 O -0.53 -17.31 16.00 19.44 0.31 -17.00 16 17 C -0.21 -4.81 9.54 23.59 0.22 -4.59 16 18 C 0.02 0.38 9.46 23.86 0.23 0.61 16 19 C -0.10 -1.67 5.87 -20.15 -0.12 -1.79 16 20 C -0.11 -1.68 9.41 22.58 0.21 -1.47 16 21 C -0.13 -1.65 10.03 22.23 0.22 -1.43 16 22 C -0.10 -1.05 10.04 22.35 0.22 -0.82 16 23 C -0.13 -1.30 10.03 22.23 0.22 -1.08 16 24 C -0.09 -1.17 9.80 22.58 0.22 -0.95 16 25 C 0.11 4.03 4.43 38.15 0.17 4.20 16 26 C -0.14 -4.69 8.45 22.39 0.19 -4.50 16 27 C -0.11 -2.66 10.04 22.25 0.22 -2.43 16 28 C -0.12 -2.36 10.04 22.29 0.22 -2.13 16 29 C -0.10 -2.20 10.04 22.25 0.22 -1.98 16 30 C -0.13 -3.87 9.66 22.39 0.22 -3.65 16 31 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 32 H 0.05 2.49 6.90 -2.39 -0.02 2.47 16 33 H 0.03 1.68 6.78 -2.39 -0.02 1.66 16 34 H 0.10 3.60 6.88 -2.39 -0.02 3.59 16 35 H 0.11 3.57 7.85 -2.38 -0.02 3.55 16 36 H 0.15 3.10 6.08 -2.91 -0.02 3.08 16 37 H 0.14 2.48 7.52 -2.91 -0.02 2.46 16 38 H 0.13 1.92 6.17 -2.91 -0.02 1.91 16 39 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 40 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 41 H 0.15 0.73 8.06 -2.91 -0.02 0.70 16 42 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.11 3.83 7.55 -2.91 -0.02 3.81 16 44 H 0.15 2.91 8.06 -2.92 -0.02 2.89 16 45 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 47 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -82.73 409.32 6.89 -75.85 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.94 Total: 21.15 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 5.29 Total: 0.96 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -1.29 Total: -85.59 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: 0.07 Total: -58.89 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -82.73 6.89 -75.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003263103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.633 kcal (2) G-P(sol) polarization free energy of solvation -82.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds