Wall clock time and date at job start Tue Mar 31 2020 06:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47439 * 2 1 4 4 C 1.34847 * 117.00068 * 179.97438 * 3 2 1 5 5 O 1.21588 * 119.99753 * 0.02562 * 4 3 2 6 6 C 1.46824 * 119.99511 * 179.97438 * 4 3 2 7 7 C 1.43189 * 120.00498 * 0.02562 * 6 4 3 8 8 N 5.00612 * 99.40228 * 0.02562 * 2 1 3 9 9 C 1.38098 * 119.99290 * 180.02562 * 6 4 3 10 10 C 1.41845 * 119.99684 * 173.00789 * 9 6 4 11 11 C 1.38678 * 126.89343 * 342.80543 * 10 9 6 12 12 N 1.34066 * 107.78534 * 180.13960 * 11 10 9 13 13 C 1.46498 * 125.10164 * 179.89855 * 12 11 10 14 14 C 1.50697 * 109.47047 * 124.71801 * 13 12 11 15 15 H 1.08009 * 120.00058 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00143 * 180.02562 * 14 13 12 17 17 N 1.31504 * 119.99870 * 359.72638 * 16 14 13 18 18 Si 1.86803 * 119.99971 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46841 * 269.72063 * 18 16 14 20 20 H 1.48498 * 109.47187 * 29.71972 * 18 16 14 21 21 H 1.48505 * 109.46915 * 149.72256 * 18 16 14 22 22 N 1.39737 * 109.80097 * 359.63869 * 12 11 10 23 23 C 1.31297 * 109.25560 * 0.22833 * 22 12 11 24 24 C 1.48225 * 126.52708 * 179.97438 * 23 22 12 25 25 C 1.39418 * 120.13205 * 144.75236 * 24 23 22 26 26 C 1.37999 * 119.87285 * 179.71957 * 25 24 23 27 27 C 1.38342 * 120.12436 * 0.57230 * 26 25 24 28 28 C 1.50701 * 119.86677 * 179.70345 * 27 26 25 29 29 C 1.38332 * 120.26103 * 359.67739 * 27 26 25 30 30 C 1.37996 * 120.13104 * 0.04288 * 29 27 26 31 31 H 1.08998 * 109.47143 * 299.99862 * 1 2 3 32 32 H 1.09002 * 109.47014 * 59.99807 * 1 2 3 33 33 H 1.08997 * 109.47661 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.46967 * 240.00101 * 2 1 3 35 35 H 1.08998 * 109.47090 * 120.00692 * 2 1 3 36 36 H 1.07995 * 120.00285 * 353.00333 * 9 6 4 37 37 H 1.08001 * 126.10385 * 0.02562 * 11 10 9 38 38 H 1.08999 * 109.46906 * 4.72710 * 13 12 11 39 39 H 1.08997 * 109.47447 * 244.72226 * 13 12 11 40 40 H 0.97006 * 120.00408 * 0.27390 * 17 16 14 41 41 H 1.08002 * 120.05975 * 359.96695 * 25 24 23 42 42 H 1.08002 * 119.93758 * 180.26956 * 26 25 24 43 43 H 1.09005 * 109.46608 * 269.97625 * 28 27 26 44 44 H 1.08998 * 109.47003 * 29.97080 * 28 27 26 45 45 H 1.08997 * 109.47181 * 149.97572 * 28 27 26 46 46 H 1.08000 * 119.93558 * 180.02562 * 29 27 26 47 47 H 1.08000 * 120.06709 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3509 1.5455 0.0005 5 8 4.0915 0.5812 0.0005 6 6 3.9121 2.9023 0.0000 7 6 3.0399 4.0379 -0.0005 8 7 2.3478 4.9389 0.0022 9 6 5.2811 3.0831 0.0000 10 6 5.8245 4.3848 -0.1500 11 6 5.1702 5.5101 -0.6282 12 7 6.0415 6.5288 -0.6108 13 6 5.7458 7.8977 -1.0408 14 6 6.0663 8.8558 0.0774 15 1 6.4521 8.4824 1.0146 16 6 5.8670 10.2090 -0.0959 17 7 5.4024 10.6642 -1.2388 18 14 6.2649 11.3967 1.2900 19 1 5.0620 11.5865 2.1399 20 1 7.3704 10.8442 2.1133 21 1 6.6785 12.7035 0.7185 22 7 7.2724 6.0905 -0.1153 23 6 7.1921 4.8125 0.1747 24 6 8.2751 3.9629 0.7246 25 6 7.9756 2.9464 1.6305 26 6 8.9874 2.1548 2.1347 27 6 10.2982 2.3761 1.7518 28 6 11.3993 1.5124 2.3110 29 6 10.6021 3.3865 0.8572 30 6 9.5980 4.1807 0.3420 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 5.9381 2.2336 0.1143 37 1 4.1427 5.5569 -0.9578 38 1 4.6893 7.9780 -1.2963 39 1 6.3505 8.1429 -1.9139 40 1 5.1961 10.0475 -1.9586 41 1 6.9532 2.7762 1.9341 42 1 8.7560 1.3643 2.8332 43 1 11.7827 1.9609 3.2276 44 1 11.0068 0.5192 2.5291 45 1 12.2048 1.4327 1.5811 46 1 11.6272 3.5543 0.5616 47 1 9.8365 4.9695 -0.3560 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003273755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:08 Heat of formation + Delta-G solvation = 45.335047 kcal Electronic energy + Delta-G solvation = -31066.377644 eV Core-core repulsion = 26794.978894 eV Total energy + Delta-G solvation = -4271.398750 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.08696 -40.33112 -39.18074 -37.11712 -36.54180 -34.83665 -33.69298 -33.34717 -31.92941 -31.39066 -31.01466 -29.55681 -27.94806 -26.53837 -24.80576 -23.55972 -23.12600 -22.68239 -21.76461 -21.63775 -20.43501 -19.88463 -18.68903 -17.31505 -16.96612 -16.64234 -16.55052 -15.69256 -15.61360 -15.38120 -15.12940 -14.56538 -14.33277 -14.22224 -13.92574 -13.89721 -13.88830 -13.49845 -13.48365 -13.31088 -13.07970 -12.97062 -12.76707 -12.51401 -12.38111 -12.23184 -12.11907 -11.98830 -11.88531 -11.76700 -11.42147 -11.29635 -11.08866 -10.88565 -10.67588 -10.66906 -10.56086 -10.26489 -10.16668 -9.81441 -9.02790 -8.99714 -8.72329 -8.42333 -7.77697 -6.75042 -4.51587 0.28449 1.04032 1.36359 2.22795 2.41506 2.48450 2.80367 2.82595 2.97005 3.29797 3.32780 3.49752 3.64404 3.80936 4.04976 4.26160 4.32065 4.54888 4.70397 4.72732 4.75946 4.77821 4.82255 4.95836 5.00930 5.05364 5.10637 5.16420 5.28641 5.35887 5.39709 5.41665 5.50446 5.55476 5.62222 5.65233 5.73827 5.84779 5.90243 5.99626 6.03641 6.16732 6.26212 6.33607 6.39423 6.49737 6.51344 6.67704 6.89678 7.13642 7.37955 7.57989 7.78613 7.90896 8.10700 8.41576 9.16703 10.63129 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.005461 B = 0.003492 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5126.242496 B = 8015.848085 C =12536.907218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.355 6.355 4 C 0.533 3.467 5 O -0.516 6.516 6 C -0.194 4.194 7 C 0.269 3.731 8 N -0.427 5.427 9 C 0.165 3.835 10 C -0.291 4.291 11 C 0.121 3.879 12 N -0.296 5.296 13 C 0.236 3.764 14 C -0.615 4.615 15 H 0.067 0.933 16 C 0.028 3.972 17 N -0.898 5.898 18 Si 1.079 2.921 19 H -0.284 1.284 20 H -0.285 1.285 21 H -0.279 1.279 22 N -0.252 5.252 23 C 0.139 3.861 24 C -0.015 4.015 25 C -0.093 4.093 26 C -0.120 4.120 27 C -0.081 4.081 28 C -0.115 4.115 29 C -0.121 4.121 30 C -0.081 4.081 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.158 0.842 37 H 0.184 0.816 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.268 0.732 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.125 0.875 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.975 -22.629 3.471 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.272 6.272 4 C 0.380 3.620 5 O -0.407 6.407 6 C -0.201 4.201 7 C -0.044 4.044 8 N -0.105 5.105 9 C 0.141 3.859 10 C -0.303 4.303 11 C -0.036 4.036 12 N -0.067 5.067 13 C 0.119 3.881 14 C -0.653 4.653 15 H 0.085 0.915 16 C -0.178 4.178 17 N -0.532 5.532 18 Si 0.905 3.095 19 H -0.210 1.210 20 H -0.210 1.210 21 H -0.205 1.205 22 N -0.069 5.069 23 C -0.030 4.030 24 C -0.017 4.017 25 C -0.112 4.112 26 C -0.138 4.138 27 C -0.082 4.082 28 C -0.171 4.171 29 C -0.139 4.139 30 C -0.101 4.101 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.175 0.825 37 H 0.201 0.799 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.143 0.857 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.806 -18.634 3.769 19.218 hybrid contribution -0.515 -2.647 -0.546 2.752 sum 2.291 -21.282 3.222 21.646 Atomic orbital electron populations 1.21813 0.92785 1.02828 1.03669 1.23012 0.95233 0.80061 1.02668 1.86631 1.23853 1.32259 1.84461 1.20210 0.80547 0.88593 0.72637 1.90863 1.60261 1.41586 1.48011 1.16705 0.90452 0.85605 1.27333 1.25237 0.92987 0.92727 0.93454 1.81308 1.08578 1.10191 1.10386 1.21306 0.91795 0.95530 0.77268 1.19125 0.94673 0.94314 1.22148 1.23942 0.96870 0.87276 0.95532 1.49230 1.06144 1.10576 1.40755 1.20129 0.97478 0.72681 0.97803 1.22022 1.49761 0.93097 1.00396 0.91502 1.25961 0.93391 0.96986 1.01412 1.70832 1.39815 1.38769 1.03807 0.83383 0.76755 0.75336 0.73978 1.20993 1.21044 1.20483 1.77493 1.02966 1.10336 1.16144 1.22056 0.91639 0.91352 0.97974 1.17706 0.90674 0.95140 0.98180 1.21206 0.99814 0.94257 0.95935 1.20920 0.91985 1.00145 1.00713 1.20020 0.94843 0.96517 0.96810 1.20809 0.96623 0.98673 1.01040 1.20959 0.99185 0.95800 0.97983 1.21263 0.91290 0.98475 0.99047 0.91464 0.91478 0.90250 0.91101 0.91085 0.82466 0.79905 0.93084 0.93628 0.92180 0.85442 0.85570 0.91121 0.91472 0.91537 0.85729 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 37.16 0.38 -0.72 16 2 C 0.06 0.60 6.20 37.16 0.23 0.83 16 3 O -0.35 -4.51 9.76 -40.89 -0.40 -4.91 16 4 C 0.53 7.13 7.87 34.20 0.27 7.40 16 5 O -0.52 -7.30 16.10 -19.33 -0.31 -7.61 16 6 C -0.19 -2.67 5.89 -104.56 -0.62 -3.28 16 7 C 0.27 4.30 11.67 -22.48 -0.26 4.04 16 8 N -0.43 -7.74 17.38 41.84 0.73 -7.01 16 9 C 0.17 2.17 8.27 -38.25 -0.32 1.85 16 10 C -0.29 -4.69 5.90 -104.84 -0.62 -5.31 16 11 C 0.12 2.24 9.91 -16.41 -0.16 2.07 16 12 N -0.30 -6.37 3.62 -61.86 -0.22 -6.59 16 13 C 0.24 5.68 5.52 -5.20 -0.03 5.65 16 14 C -0.61 -16.67 9.20 -34.44 -0.32 -16.99 16 15 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 16 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 17 N -0.90 -25.54 13.65 55.43 0.76 -24.79 16 18 Si 1.08 24.51 29.90 -169.99 -5.08 19.43 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 N -0.25 -5.26 12.25 34.62 0.42 -4.83 16 23 C 0.14 2.39 6.94 -80.48 -0.56 1.83 16 24 C -0.02 -0.21 5.83 -104.91 -0.61 -0.83 16 25 C -0.09 -1.10 8.71 -39.23 -0.34 -1.45 16 26 C -0.12 -1.21 9.68 -39.63 -0.38 -1.60 16 27 C -0.08 -0.80 5.88 -104.55 -0.62 -1.42 16 28 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 29 C -0.12 -1.31 9.68 -39.64 -0.38 -1.70 16 30 C -0.08 -1.08 9.76 -39.23 -0.38 -1.46 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.16 1.73 6.55 -52.49 -0.34 1.39 16 37 H 0.18 3.26 5.00 -52.49 -0.26 3.00 16 38 H 0.05 1.22 7.91 -51.93 -0.41 0.81 16 39 H 0.05 1.12 8.00 -51.93 -0.42 0.70 16 40 H 0.27 7.43 7.22 -40.82 -0.29 7.14 16 41 H 0.13 1.38 6.71 -52.49 -0.35 1.02 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 45 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 415.05 15.07 6.25 6.25 Total: -1.00 -31.63 415.05 -8.24 -39.87 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.93 Total: 1.03 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -4.45 Total: -10.84 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 1.68 Total: -43.22 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.71 Total: -12.52 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.08 Total: 19.43 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.63 -8.24 -39.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003273755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.206 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds