Wall clock time and date at job start Tue Mar 31 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86801 * 120.00076 * 2 1 4 4 H 1.48493 * 109.47079 * 239.99791 * 3 2 1 5 5 H 1.48500 * 109.46664 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47336 * 119.99494 * 3 2 1 7 7 C 1.38755 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00068 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.34310 * 117.00349 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99805 * 180.27868 * 10 9 7 13 13 H 1.08994 * 109.47555 * 59.72727 * 12 10 9 14 14 C 1.52997 * 109.47275 * 299.72282 * 12 10 9 15 15 C 1.50697 * 109.47595 * 175.00384 * 14 12 10 16 16 C 1.38243 * 119.99990 * 269.73229 * 15 14 12 17 17 C 1.38234 * 119.99797 * 179.76501 * 16 15 14 18 18 C 1.38231 * 120.00016 * 0.50248 * 17 16 15 19 19 C 1.38237 * 120.00155 * 359.74818 * 18 17 16 20 20 C 1.38231 * 120.00143 * 359.97438 * 19 18 17 21 21 N 1.46499 * 109.47029 * 179.72719 * 12 10 9 22 22 C 1.34525 * 124.46483 * 59.69296 * 21 12 10 23 23 O 1.21446 * 125.70494 * 0.04015 * 22 21 12 24 24 C 1.47809 * 108.58696 * 179.90827 * 22 21 12 25 25 C 1.38569 * 134.30128 * 180.10232 * 24 22 21 26 26 C 1.38611 * 119.71822 * 180.27335 * 25 24 22 27 27 C 1.38236 * 120.46092 * 0.02562 * 26 25 24 28 28 C 1.38612 * 120.45973 * 359.97438 * 27 26 25 29 29 C 1.38566 * 119.71673 * 0.02562 * 28 27 26 30 30 C 1.34533 * 124.46247 * 239.99960 * 21 12 10 31 31 O 1.21444 * 125.70613 * 359.96186 * 30 21 12 32 32 H 0.96993 * 120.00374 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.47201 * 295.00171 * 14 12 10 34 34 H 1.09003 * 109.47135 * 55.00523 * 14 12 10 35 35 H 1.08002 * 119.99600 * 359.97438 * 16 15 14 36 36 H 1.08003 * 119.99440 * 180.23178 * 17 16 15 37 37 H 1.08004 * 119.99845 * 179.73014 * 18 17 16 38 38 H 1.08005 * 119.99561 * 179.97438 * 19 18 17 39 39 H 1.07997 * 120.00113 * 179.97438 * 20 19 18 40 40 H 1.07990 * 120.13777 * 0.25117 * 25 24 22 41 41 H 1.07996 * 119.77438 * 180.02562 * 26 25 24 42 42 H 1.07994 * 119.77082 * 180.02562 * 27 26 25 43 43 H 1.07999 * 120.14130 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6964 -1.2124 5 1 1.2834 2.7464 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4966 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3810 -4.8392 -0.0058 13 1 0.7581 -4.9255 -0.8960 14 6 0.5071 -4.9723 1.2430 15 6 -0.2711 -6.2611 1.1767 16 6 -1.5216 -6.2839 0.5879 17 6 -2.2334 -7.4671 0.5228 18 6 -1.6991 -8.6253 1.0556 19 6 -0.4508 -8.6014 1.6490 20 6 0.2635 -7.4194 1.7090 21 7 2.3900 -5.9014 -0.0111 22 6 3.3202 -6.0724 0.9455 23 8 3.4542 -5.3819 1.9355 24 6 4.1500 -7.2434 0.5917 25 6 5.2284 -7.8800 1.1848 26 6 5.7967 -8.9851 0.5706 27 6 5.2954 -9.4554 -0.6287 28 6 4.2171 -8.8287 -1.2336 29 6 3.6388 -7.7230 -0.6312 30 6 2.5120 -6.8307 -0.9762 31 8 1.8135 -6.9210 -1.9656 32 1 -0.4850 0.8400 -0.0004 33 1 1.1398 -4.9752 2.1306 34 1 -0.1853 -4.1319 1.2931 35 1 -1.9410 -5.3779 0.1758 36 1 -3.2088 -7.4856 0.0594 37 1 -2.2571 -9.5488 1.0086 38 1 -0.0336 -9.5063 2.0656 39 1 1.2385 -7.4007 2.1729 40 1 5.6247 -7.5165 2.1213 41 1 6.6370 -9.4822 1.0323 42 1 5.7465 -10.3175 -1.0972 43 1 3.8293 -9.2007 -2.1704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003281910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:34 Heat of formation + Delta-G solvation = -59.868408 kcal Electronic energy + Delta-G solvation = -33009.952338 eV Core-core repulsion = 28565.865778 eV Total energy + Delta-G solvation = -4444.086560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.114 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.36243 -39.53523 -38.91117 -38.45984 -38.29831 -35.89764 -35.07760 -34.03030 -32.17704 -31.40705 -31.32381 -30.83505 -29.09335 -25.67203 -25.09891 -24.95428 -23.31653 -22.54054 -22.20532 -21.03665 -20.74083 -19.39189 -17.97350 -17.73291 -17.21694 -16.89161 -16.69511 -16.20541 -15.96484 -15.29311 -15.14195 -15.05481 -14.74702 -14.54118 -14.48304 -14.43289 -14.18272 -14.14079 -13.75547 -13.33997 -13.06045 -13.02661 -12.82852 -12.53179 -12.29379 -12.20076 -11.97355 -11.66773 -11.56083 -11.17112 -10.98562 -10.92832 -10.48910 -10.45065 -10.39166 -10.10260 -9.94274 -9.84264 -9.42626 -9.40782 -9.07299 -8.86209 -8.61477 -8.58163 -6.45366 -4.13020 0.02547 0.78215 1.38279 1.45907 2.02201 2.32745 3.06337 3.09184 3.18363 3.22389 3.37713 3.45403 3.60075 3.82545 3.91738 4.30818 4.39808 4.44091 4.62881 4.84130 4.89499 4.91620 5.00975 5.02033 5.05695 5.15863 5.17566 5.22818 5.29585 5.41819 5.54730 5.55834 5.60777 5.76561 5.86357 5.92129 5.94796 5.98615 6.14613 6.23396 6.37058 6.49128 6.54985 6.57890 6.73092 6.85128 7.06003 7.34481 7.37003 7.81736 7.89676 8.60329 9.02788 9.73170 10.71868 Molecular weight = 365.11amu Principal moments of inertia in cm(-1) A = 0.009006 B = 0.003861 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.171573 B = 7250.121782 C = 9374.921029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.045 3.955 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.381 4.381 8 H 0.096 0.904 9 O -0.203 6.203 10 C 0.389 3.611 11 O -0.538 6.538 12 C 0.171 3.829 13 H 0.132 0.868 14 C -0.093 4.093 15 C -0.077 4.077 16 C -0.108 4.108 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.120 4.120 20 C -0.115 4.115 21 N -0.553 5.553 22 C 0.577 3.423 23 O -0.440 6.440 24 C -0.128 4.128 25 C -0.050 4.050 26 C -0.098 4.098 27 C -0.102 4.102 28 C -0.048 4.048 29 C -0.134 4.134 30 C 0.578 3.422 31 O -0.465 6.465 32 H 0.271 0.729 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 -21.617 1.608 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.159 4.159 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.457 4.457 8 H 0.114 0.886 9 O -0.109 6.109 10 C 0.234 3.766 11 O -0.434 6.434 12 C 0.068 3.932 13 H 0.150 0.850 14 C -0.130 4.130 15 C -0.077 4.077 16 C -0.125 4.125 17 C -0.135 4.135 18 C -0.143 4.143 19 C -0.138 4.138 20 C -0.133 4.133 21 N -0.295 5.295 22 C 0.365 3.635 23 O -0.309 6.309 24 C -0.132 4.132 25 C -0.068 4.068 26 C -0.116 4.116 27 C -0.120 4.120 28 C -0.066 4.066 29 C -0.137 4.137 30 C 0.367 3.633 31 O -0.336 6.336 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.135 -20.991 1.626 21.286 hybrid contribution 0.466 0.884 -0.097 1.004 sum 3.601 -20.106 1.529 20.483 Atomic orbital electron populations 1.69969 1.05946 1.27959 1.45952 1.25324 0.95851 0.98775 0.95995 0.85725 0.78664 0.79282 0.79424 1.19456 1.20275 1.19392 1.21195 0.92434 0.79440 1.52644 0.88644 1.83832 1.38945 1.12977 1.75171 1.22748 0.86838 0.86916 0.80134 1.90593 1.15169 1.87454 1.50150 1.20510 0.87210 0.82930 1.02565 0.85045 1.21006 0.98379 0.96516 0.97136 1.19839 0.94947 0.94782 0.98137 1.21192 0.94143 0.98634 0.98577 1.21136 0.99914 0.92758 0.99688 1.21099 0.95944 0.98177 0.99105 1.21060 0.95136 0.97622 0.99971 1.21020 0.99573 0.92613 1.00092 1.46174 1.31652 1.28513 1.23195 1.18171 0.79520 0.83458 0.82359 1.90803 1.67320 1.47139 1.25659 1.20690 0.98423 0.97175 0.96878 1.20801 0.92546 0.93731 0.99745 1.21421 0.99486 0.95487 0.95239 1.21402 0.95490 0.99755 0.95350 1.20772 0.94168 0.92290 0.99398 1.20591 0.97950 0.98158 0.97046 1.18288 0.83155 0.80202 0.81668 1.90787 1.46331 1.71112 1.25412 0.91896 0.88884 0.86797 0.85291 0.86027 0.86353 0.86364 0.86969 0.84080 0.84254 0.84274 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.89 13.67 55.48 0.76 -24.13 16 2 C 0.05 1.27 5.49 -17.53 -0.10 1.17 16 3 Si 0.94 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.38 -11.31 9.65 30.92 0.30 -11.01 16 8 H 0.10 2.88 6.86 -52.48 -0.36 2.52 16 9 O -0.20 -5.78 9.56 -20.71 -0.20 -5.98 16 10 C 0.39 9.89 6.92 36.00 0.25 10.14 16 11 O -0.54 -14.91 14.11 -24.42 -0.34 -15.26 16 12 C 0.17 3.42 2.68 -69.09 -0.19 3.23 16 13 H 0.13 2.53 7.58 -51.93 -0.39 2.14 16 14 C -0.09 -1.64 4.75 -27.89 -0.13 -1.78 16 15 C -0.08 -1.18 4.95 -104.62 -0.52 -1.70 16 16 C -0.11 -1.52 9.70 -39.58 -0.38 -1.90 16 17 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 18 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 19 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 20 C -0.11 -1.63 9.31 -39.58 -0.37 -1.99 16 21 N -0.55 -10.23 1.70 -111.75 -0.19 -10.42 16 22 C 0.58 10.48 6.03 -12.46 -0.08 10.41 16 23 O -0.44 -9.17 15.51 -9.24 -0.14 -9.32 16 24 C -0.13 -1.81 6.41 -104.83 -0.67 -2.48 16 25 C -0.05 -0.51 10.09 -39.32 -0.40 -0.91 16 26 C -0.10 -0.72 10.04 -39.44 -0.40 -1.11 16 27 C -0.10 -0.73 10.04 -39.44 -0.40 -1.12 16 28 C -0.05 -0.47 10.09 -39.32 -0.40 -0.87 16 29 C -0.13 -1.84 6.40 -104.83 -0.67 -2.51 16 30 C 0.58 9.91 8.02 -12.45 -0.10 9.81 16 31 O -0.46 -8.71 17.43 5.41 0.09 -8.61 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.09 1.73 6.65 -51.93 -0.35 1.38 16 34 H 0.11 2.07 7.94 -51.93 -0.41 1.66 16 35 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.11 1.58 7.42 -52.49 -0.39 1.19 16 40 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 382.78 15.07 5.77 5.77 Total: -1.00 -36.33 382.78 -9.13 -45.46 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.42 Total: 4.22 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -5.43 Total: 1.86 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.57 Total: -34.55 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.59 Total: -39.17 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.33 -9.13 -45.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003281910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.406 kcal (2) G-P(sol) polarization free energy of solvation -36.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds