Wall clock time and date at job start Tue Mar 31 2020 05:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35711 * 117.00372 * 2 1 4 4 C 1.38998 * 119.91150 * 180.02562 * 3 2 1 5 5 C 1.37696 * 120.08568 * 180.30414 * 4 3 2 6 6 C 1.39738 * 119.91059 * 359.45088 * 5 4 3 7 7 C 1.47608 * 120.08581 * 180.27807 * 6 5 4 8 8 O 1.21590 * 119.99957 * 180.26917 * 7 6 5 9 9 N 1.34776 * 120.00242 * 0.27086 * 7 6 5 10 10 C 1.46497 * 120.00055 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.46975 * 179.97438 * 10 9 7 12 12 O 1.20823 * 120.00188 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99840 * 180.02562 * 11 10 9 14 14 C 1.45199 * 117.00119 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47420 * 179.97438 * 14 13 11 16 16 O 1.21287 * 119.99893 * 0.02562 * 15 14 13 17 17 N 1.34769 * 120.00227 * 179.97438 * 15 14 13 18 18 C 1.46509 * 120.00004 * 0.02562 * 17 15 14 19 19 C 1.46504 * 120.00136 * 180.02562 * 17 15 14 20 20 C 1.50698 * 109.47368 * 90.00032 * 19 17 15 21 21 H 1.07998 * 119.99847 * 359.97438 * 20 19 17 22 22 C 1.37878 * 120.00144 * 180.02562 * 20 19 17 23 23 N 1.31511 * 119.99851 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99900 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47619 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47171 * 119.99919 * 24 22 20 27 27 H 1.48506 * 109.46917 * 239.99748 * 24 22 20 28 28 C 1.39729 * 119.82329 * 0.54857 * 6 5 4 29 29 C 1.37693 * 119.91370 * 359.72412 * 28 6 5 30 30 H 1.08997 * 109.47694 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46788 * 299.99869 * 1 2 3 32 32 H 1.08998 * 109.47527 * 59.99216 * 1 2 3 33 33 H 1.08002 * 119.95393 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.04558 * 179.70572 * 5 4 3 35 35 H 0.96998 * 119.99975 * 0.02562 * 9 7 6 36 36 H 1.08995 * 109.47268 * 299.99720 * 10 9 7 37 37 H 1.09002 * 109.46915 * 60.00415 * 10 9 7 38 38 H 1.08999 * 109.46811 * 299.99858 * 14 13 11 39 39 H 1.09005 * 109.46780 * 59.99608 * 14 13 11 40 40 H 1.08997 * 109.46894 * 90.00118 * 18 17 15 41 41 H 1.09002 * 109.46984 * 209.99989 * 18 17 15 42 42 H 1.09000 * 109.47061 * 329.99860 * 18 17 15 43 43 H 1.09002 * 109.46848 * 210.00105 * 19 17 15 44 44 H 1.08991 * 109.47103 * 329.99558 * 19 17 15 45 45 H 0.97002 * 119.99896 * 180.02562 * 23 22 20 46 46 H 1.08006 * 120.04126 * 179.71144 * 28 6 5 47 47 H 1.07996 * 119.96101 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4334 1.2797 -0.0005 5 6 4.0623 2.5046 0.0058 6 6 3.3031 3.6777 0.0011 7 6 3.9733 4.9929 0.0017 8 8 3.3112 6.0126 0.0026 9 7 5.3192 5.0633 0.0012 10 6 5.9844 6.3686 0.0011 11 6 7.4784 6.1711 0.0011 12 8 7.9402 5.0545 0.0016 13 8 8.2961 7.2355 0.0016 14 6 9.7236 6.9702 0.0022 15 6 10.4772 8.2752 0.0020 16 8 9.8708 9.3256 0.0020 17 7 11.8249 8.2751 0.0030 18 6 12.5574 7.0063 0.0036 19 6 12.5575 9.5439 0.0035 20 6 12.8077 9.9790 1.4244 21 1 12.4558 9.3715 2.2450 22 6 13.4849 11.1532 1.6767 23 7 13.9130 11.8932 0.6773 24 14 13.7957 11.6921 3.4380 25 1 13.2179 10.6918 4.3711 26 1 15.2581 11.8010 3.6717 27 1 13.1575 13.0126 3.6715 28 6 1.9078 3.6025 0.0017 29 6 1.2864 2.3738 0.0011 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 4.0194 0.3725 -0.0014 34 1 5.1409 2.5586 0.0102 35 1 5.8475 4.2498 0.0000 36 1 5.6912 6.9258 -0.8886 37 1 5.6919 6.9254 0.8914 38 1 9.9865 6.3985 0.8922 39 1 9.9872 6.3986 -0.8878 40 1 12.7398 6.6917 -1.0239 41 1 13.5095 7.1367 0.5181 42 1 11.9679 6.2467 0.5171 43 1 13.5103 9.4134 -0.5097 44 1 11.9689 10.3034 -0.5109 45 1 14.3897 12.7191 0.8549 46 1 1.3176 4.5070 0.0028 47 1 0.2081 2.3147 0.0019 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003283848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:31 Heat of formation + Delta-G solvation = -151.518504 kcal Electronic energy + Delta-G solvation = -30679.875321 eV Core-core repulsion = 26022.224257 eV Total energy + Delta-G solvation = -4657.651064 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.156 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -41.12071 -40.72860 -39.78597 -38.91074 -37.55603 -36.70727 -34.97195 -34.89759 -32.70136 -31.72476 -31.32762 -29.77512 -28.43658 -27.88551 -27.07391 -25.69309 -23.83876 -23.08081 -22.79055 -21.35200 -20.90626 -19.18952 -18.86459 -18.46719 -17.55443 -17.10827 -17.06938 -16.55555 -16.48106 -16.35987 -15.93153 -15.70631 -15.62338 -15.44765 -15.04947 -14.75241 -14.42764 -14.22926 -14.01425 -13.94532 -13.69120 -13.17057 -13.07239 -12.98300 -12.80675 -12.53577 -12.42148 -12.29080 -12.16338 -11.93208 -11.64464 -11.39586 -11.27069 -10.98339 -10.91432 -10.81349 -10.64465 -10.43021 -10.20780 -9.67672 -9.65640 -9.62119 -9.08345 -8.80081 -8.48383 -7.79241 -6.09270 -4.14446 0.39589 0.79642 1.84033 1.97406 2.41878 2.63008 2.88697 3.17659 3.27764 3.35857 3.36904 3.39808 3.76211 4.18760 4.24748 4.27445 4.40293 4.48750 4.53888 4.56623 4.68110 4.82403 4.83130 4.90975 4.93107 4.99269 5.05999 5.08645 5.13397 5.25822 5.44511 5.53411 5.59966 5.71807 5.78515 5.81428 5.81935 6.06604 6.10240 6.12839 6.73589 6.91666 7.02526 7.33967 7.35817 7.43847 7.77273 7.86507 8.15807 8.21994 8.78665 8.93839 9.50943 10.98981 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.024696 B = 0.001347 C = 0.001325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.534033 B =20780.604550 C =21130.627981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.155 3.845 4 C -0.159 4.159 5 C -0.043 4.043 6 C -0.175 4.175 7 C 0.569 3.431 8 O -0.534 6.534 9 N -0.721 5.721 10 C 0.128 3.872 11 C 0.461 3.539 12 O -0.512 6.512 13 O -0.321 6.321 14 C 0.051 3.949 15 C 0.504 3.496 16 O -0.517 6.517 17 N -0.596 5.596 18 C 0.078 3.922 19 C 0.246 3.754 20 C -0.530 4.530 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.900 3.100 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 C -0.014 4.014 29 C -0.219 4.219 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.411 0.589 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.264 0.736 46 H 0.141 0.859 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.516 -25.871 -3.195 35.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.108 3.892 4 C -0.178 4.178 5 C -0.061 4.061 6 C -0.178 4.178 7 C 0.357 3.643 8 O -0.412 6.412 9 N -0.378 5.378 10 C 0.004 3.996 11 C 0.304 3.696 12 O -0.401 6.401 13 O -0.234 6.234 14 C -0.026 4.026 15 C 0.289 3.711 16 O -0.393 6.393 17 N -0.330 5.330 18 C -0.066 4.066 19 C 0.128 3.872 20 C -0.569 4.569 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 C -0.033 4.033 29 C -0.238 4.238 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.250 0.750 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.159 0.841 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.910 -24.880 -3.240 34.658 hybrid contribution 0.549 -0.139 0.990 1.140 sum -23.361 -25.018 -2.251 34.303 Atomic orbital electron populations 1.23154 0.77767 1.04394 1.01772 1.86056 1.21945 1.26833 1.87753 1.19348 0.92465 0.84314 0.93032 1.20377 0.91336 0.98799 1.07242 1.21180 0.99946 0.90897 0.94115 1.19704 0.94351 0.92409 1.11346 1.18076 0.81150 0.89112 0.75943 1.90820 1.64572 1.36153 1.49638 1.45644 1.06764 1.08993 1.76385 1.20629 0.84850 0.86981 1.07181 1.23472 0.90588 0.83102 0.72458 1.90649 1.77643 1.25560 1.46232 1.86544 1.18418 1.35694 1.82759 1.23009 0.76836 0.98300 1.04441 1.19680 0.83105 0.89314 0.79050 1.90735 1.67333 1.32616 1.48595 1.48104 1.04319 1.09250 1.71373 1.21741 0.98485 0.85552 1.00840 1.19374 0.91153 0.78922 0.97786 1.21457 1.36211 1.07017 0.92196 0.92307 1.24932 0.95470 0.96067 0.97555 1.69937 1.38274 1.14277 1.30741 0.86420 0.77712 0.78742 0.84411 1.19791 1.20928 1.20800 1.21058 0.93014 0.97846 0.91395 1.21243 1.00542 0.91878 1.10100 0.87895 0.92230 0.92238 0.84291 0.84585 0.75011 0.86371 0.86347 0.88346 0.88485 0.93258 0.90166 0.92503 0.94549 0.93580 0.92669 0.84090 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.81 101.05 0.99 1.06 16 2 O -0.31 -2.07 10.48 -18.84 -0.20 -2.27 16 3 C 0.15 1.10 6.70 -39.02 -0.26 0.84 16 4 C -0.16 -1.08 9.97 -39.50 -0.39 -1.48 16 5 C -0.04 -0.30 9.53 -39.22 -0.37 -0.67 16 6 C -0.17 -1.52 5.88 -104.96 -0.62 -2.13 16 7 C 0.57 5.99 7.76 -12.44 -0.10 5.89 16 8 O -0.53 -7.27 16.34 5.29 0.09 -7.18 16 9 N -0.72 -6.69 5.48 -62.51 -0.34 -7.03 16 10 C 0.13 1.27 6.27 -5.19 -0.03 1.24 16 11 C 0.46 5.58 8.03 36.01 0.29 5.87 16 12 O -0.51 -6.56 15.42 -18.75 -0.29 -6.85 16 13 O -0.32 -4.83 9.75 -45.90 -0.45 -5.28 16 14 C 0.05 0.77 4.50 36.01 0.16 0.93 16 15 C 0.50 10.30 7.75 -10.99 -0.09 10.21 16 16 O -0.52 -13.03 16.08 -14.11 -0.23 -13.26 16 17 N -0.60 -12.21 2.86 -182.95 -0.52 -12.73 16 18 C 0.08 1.15 10.24 59.85 0.61 1.76 16 19 C 0.25 6.29 5.16 -5.19 -0.03 6.26 16 20 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 21 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 24 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 C -0.01 -0.11 9.58 -39.22 -0.38 -0.49 16 29 C -0.22 -1.43 9.01 -39.50 -0.36 -1.79 16 30 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.13 7.65 -51.93 -0.40 -0.27 16 32 H 0.06 0.13 7.65 -51.93 -0.40 -0.27 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.14 0.69 6.39 -52.49 -0.34 0.36 16 35 H 0.41 3.30 5.46 -40.82 -0.22 3.08 16 36 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 1.30 7.39 -51.93 -0.38 0.91 16 39 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 42 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 43 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 44 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 46 H 0.14 1.09 7.64 -52.48 -0.40 0.69 16 47 H 0.14 0.57 6.28 -52.49 -0.33 0.24 16 LS Contribution 408.91 15.07 6.16 6.16 Total: -1.00 -36.94 408.91 -7.15 -44.09 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.11 Total: -0.86 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: -0.98 Total: 14.05 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.13 Total: -45.25 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.07 Total: -34.83 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.94 -7.15 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003283848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.427 kcal (2) G-P(sol) polarization free energy of solvation -36.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds