Wall clock time and date at job start Tue Mar 31 2020 06:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47387 * 300.00426 * 3 2 1 6 6 H 1.48504 * 109.47177 * 60.00589 * 3 2 1 7 7 C 1.37879 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99575 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00283 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47476 * 180.02562 * 9 7 2 11 11 C 1.34166 * 125.16745 * 125.00031 * 10 9 7 12 12 C 1.37970 * 107.88550 * 179.97438 * 11 10 9 13 13 C 1.47274 * 126.80706 * 180.02562 * 12 11 10 14 14 O 1.21629 * 119.99924 * 179.97438 * 13 12 11 15 15 N 1.34774 * 119.99812 * 359.96353 * 13 12 11 16 16 C 1.39973 * 119.99931 * 174.72662 * 15 13 12 17 17 C 1.38865 * 120.04495 * 326.51781 * 16 15 13 18 18 C 1.38116 * 119.95485 * 179.74640 * 17 16 15 19 19 C 1.38470 * 120.04328 * 0.50610 * 18 17 16 20 20 F 1.35104 * 119.95165 * 179.74785 * 19 18 17 21 21 C 1.38476 * 120.09691 * 359.76944 * 19 18 17 22 22 C 1.38115 * 120.04380 * 359.97438 * 21 19 18 23 23 C 1.46605 * 106.38400 * 0.02562 * 12 11 10 24 24 C 1.48282 * 126.51203 * 179.97438 * 23 12 11 25 25 C 1.39385 * 120.12401 * 144.99528 * 24 23 12 26 26 C 1.38007 * 119.87123 * 179.97438 * 25 24 23 27 27 C 1.38324 * 120.12900 * 359.97438 * 26 25 24 28 28 C 1.38336 * 120.25097 * 0.02562 * 27 26 25 29 29 C 1.38002 * 120.12452 * 0.02562 * 28 27 26 30 30 N 1.31364 * 106.97296 * 0.26227 * 23 12 11 31 31 H 0.96998 * 119.99558 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.46784 * 59.99859 * 9 7 2 33 33 H 1.09005 * 109.46781 * 300.00470 * 9 7 2 34 34 H 1.07999 * 126.05468 * 0.02562 * 11 10 9 35 35 H 0.97007 * 120.00428 * 354.72135 * 15 13 12 36 36 H 1.08002 * 120.02164 * 359.97438 * 17 16 15 37 37 H 1.07992 * 119.97656 * 180.25523 * 18 17 16 38 38 H 1.07998 * 119.97973 * 179.97438 * 21 19 18 39 39 H 1.08002 * 120.02473 * 179.97438 * 22 21 19 40 40 H 1.07996 * 120.06528 * 359.96289 * 25 24 23 41 41 H 1.07998 * 119.93603 * 180.02562 * 26 25 24 42 42 H 1.08000 * 119.88079 * 179.74409 * 27 26 25 43 43 H 1.08003 * 119.93221 * 179.97438 * 28 27 26 44 44 H 1.08003 * 120.06422 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2269 -4.6089 0.8979 12 6 3.2613 -5.4578 0.5618 13 6 3.6593 -6.6868 1.2690 14 8 4.5967 -7.3463 0.8618 15 7 2.9850 -7.0806 2.3674 16 6 3.2907 -8.3038 2.9752 17 6 3.7000 -9.3817 2.2013 18 6 4.0062 -10.5863 2.8035 19 6 3.8953 -10.7227 4.1770 20 9 4.1904 -11.9035 4.7636 21 6 3.4819 -9.6509 4.9501 22 6 3.1797 -8.4429 4.3524 23 6 3.8856 -4.8938 -0.6388 24 6 5.0438 -5.4533 -1.3767 25 6 5.1118 -5.3369 -2.7640 26 6 6.1924 -5.8590 -3.4454 27 6 7.2069 -6.4965 -2.7543 28 6 7.1447 -6.6150 -1.3774 29 6 6.0685 -6.0977 -0.6856 30 7 3.2280 -3.7954 -0.9331 31 1 -0.4849 0.8401 0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6247 -2.5570 0.8897 34 1 1.5550 -4.7259 1.7352 35 1 2.2878 -6.5163 2.7369 36 1 3.7823 -9.2770 1.1295 37 1 4.3285 -11.4236 2.2023 38 1 3.3956 -9.7595 6.0211 39 1 2.8569 -7.6073 4.9557 40 1 4.3204 -4.8391 -3.3046 41 1 6.2464 -5.7690 -4.5203 42 1 8.0487 -6.9073 -3.2920 43 1 7.9395 -7.1142 -0.8430 44 1 6.0207 -6.1911 0.3893 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003355971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:07 Heat of formation + Delta-G solvation = 49.148124 kcal Electronic energy + Delta-G solvation = -30861.774925 eV Core-core repulsion = 26467.081217 eV Total energy + Delta-G solvation = -4394.693708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.128 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -48.99505 -40.97474 -40.03930 -38.59727 -38.10009 -34.70576 -33.96950 -32.41552 -31.33719 -30.88402 -30.56530 -30.03704 -28.75932 -27.09702 -23.92379 -23.75633 -23.35257 -22.42909 -22.08556 -21.40927 -19.88761 -19.48914 -18.25786 -17.71290 -17.04558 -16.82084 -16.59772 -16.16051 -15.71994 -15.59711 -15.25414 -14.94580 -14.67572 -14.45549 -14.39517 -14.18153 -13.89697 -13.68220 -13.45163 -13.23449 -13.03887 -12.96652 -12.86587 -12.56007 -12.40865 -12.22017 -11.90229 -11.37488 -11.18727 -11.03625 -11.02633 -10.86580 -10.44004 -10.39355 -10.22125 -9.95015 -9.72253 -9.30779 -9.25851 -8.79885 -8.59003 -8.45716 -8.15508 -7.84516 -6.42039 -4.48145 0.88085 1.04431 1.31659 1.73801 1.89156 2.72428 2.91849 3.12926 3.16228 3.21657 3.29573 3.33946 3.67553 4.13146 4.16932 4.19218 4.51616 4.62714 4.65623 4.84760 4.96034 5.02156 5.09661 5.19104 5.22082 5.25864 5.34356 5.42746 5.58905 5.70041 5.71255 5.77719 5.91781 5.92822 6.06516 6.09927 6.16189 6.29584 6.33343 6.47025 6.63410 6.75997 6.78555 6.80476 6.86507 7.00801 7.25475 7.32370 7.41924 7.62439 7.64262 8.17423 8.24862 8.59775 9.19226 10.66979 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.008332 B = 0.002709 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3359.727441 B =10333.124381 C =13122.809636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.249 3.751 10 N -0.307 5.307 11 C 0.104 3.896 12 C -0.319 4.319 13 C 0.602 3.398 14 O -0.523 6.523 15 N -0.677 5.677 16 C 0.154 3.846 17 C -0.094 4.094 18 C -0.132 4.132 19 C 0.072 3.928 20 F -0.144 7.144 21 C -0.133 4.133 22 C -0.123 4.123 23 C 0.144 3.856 24 C -0.014 4.014 25 C -0.090 4.090 26 C -0.135 4.135 27 C -0.116 4.116 28 C -0.133 4.133 29 C -0.058 4.058 30 N -0.259 5.259 31 H 0.269 0.731 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.177 0.823 35 H 0.410 0.590 36 H 0.147 0.853 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 -17.224 5.241 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.132 3.868 10 N -0.082 5.082 11 C -0.051 4.051 12 C -0.335 4.335 13 C 0.395 3.605 14 O -0.400 6.400 15 N -0.322 5.322 16 C 0.058 3.942 17 C -0.114 4.114 18 C -0.151 4.151 19 C 0.052 3.948 20 F -0.123 7.123 21 C -0.152 4.152 22 C -0.144 4.144 23 C -0.023 4.023 24 C -0.016 4.016 25 C -0.109 4.109 26 C -0.153 4.153 27 C -0.134 4.134 28 C -0.151 4.151 29 C -0.077 4.077 30 N -0.079 5.079 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.194 0.806 35 H 0.246 0.754 36 H 0.165 0.835 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.175 -16.359 4.088 17.957 hybrid contribution -0.145 0.473 0.973 1.092 sum 6.030 -15.885 5.061 17.729 Atomic orbital electron populations 1.69913 1.06077 1.27862 1.49172 1.24934 0.95005 0.99680 0.94223 0.86248 0.80139 0.82176 0.77884 1.19409 1.20524 1.20640 1.21218 0.94086 0.89013 1.52908 0.91029 1.19989 0.85641 0.81289 0.99884 1.49317 1.22715 1.18850 1.17301 1.22925 0.97735 0.89230 0.95246 1.20736 1.06223 1.02185 1.04362 1.17376 0.80862 0.83869 0.78394 1.90739 1.27611 1.55900 1.65749 1.43499 1.39544 1.19564 1.29575 1.17761 0.99322 0.85751 0.91321 1.21102 0.98805 0.90090 1.01405 1.21040 1.02292 0.98996 0.92813 1.17676 1.03686 0.81997 0.91460 1.91482 1.91288 1.45007 1.84529 1.20885 1.01822 0.92076 1.00444 1.20771 1.03116 0.97985 0.92533 1.21751 0.95204 0.92226 0.93165 1.17711 0.92161 0.99520 0.92173 1.21233 0.98263 0.98184 0.93224 1.20957 0.94628 1.00123 0.99619 1.21163 0.98478 0.99249 0.94546 1.21011 0.98558 1.01350 0.94187 1.21540 0.91379 0.93411 1.01399 1.77529 1.00697 1.16184 1.13476 0.92152 0.92955 0.92229 0.80620 0.75396 0.83522 0.84580 0.84565 0.84639 0.85798 0.86252 0.86584 0.86325 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.73 13.29 55.43 0.74 -23.00 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -13.76 9.20 -34.44 -0.32 -14.08 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.25 5.63 6.21 -5.20 -0.03 5.59 16 10 N -0.31 -6.18 3.62 -62.03 -0.22 -6.40 16 11 C 0.10 1.64 10.89 -16.63 -0.18 1.45 16 12 C -0.32 -5.20 6.26 -102.95 -0.64 -5.85 16 13 C 0.60 8.66 7.41 -12.59 -0.09 8.57 16 14 O -0.52 -8.36 10.13 5.25 0.05 -8.31 16 15 N -0.68 -7.41 5.33 -10.86 -0.06 -7.47 16 16 C 0.15 1.67 6.28 -83.68 -0.53 1.14 16 17 C -0.09 -1.08 8.65 -39.39 -0.34 -1.42 16 18 C -0.13 -1.37 10.02 -39.54 -0.40 -1.77 16 19 C 0.07 0.74 7.30 -39.41 -0.29 0.46 16 20 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 21 C -0.13 -1.19 10.02 -39.54 -0.40 -1.59 16 22 C -0.12 -1.10 9.96 -39.40 -0.39 -1.49 16 23 C 0.14 2.71 6.94 -80.56 -0.56 2.16 16 24 C -0.01 -0.24 5.73 -104.91 -0.60 -0.84 16 25 C -0.09 -1.43 9.76 -39.24 -0.38 -1.81 16 26 C -0.14 -1.81 10.03 -39.63 -0.40 -2.21 16 27 C -0.12 -1.46 10.04 -39.51 -0.40 -1.86 16 28 C -0.13 -1.82 10.03 -39.63 -0.40 -2.21 16 29 C -0.06 -0.93 7.78 -39.24 -0.31 -1.23 16 30 N -0.26 -5.50 12.27 34.57 0.42 -5.08 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.29 8.05 -51.93 -0.42 0.87 16 34 H 0.18 1.92 7.49 -52.49 -0.39 1.52 16 35 H 0.41 3.36 7.79 -40.82 -0.32 3.04 16 36 H 0.15 1.86 6.42 -52.49 -0.34 1.53 16 37 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 44 H 0.14 2.31 5.64 -52.48 -0.30 2.02 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -30.07 386.79 -9.66 -39.73 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.69 Total: 6.28 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -6.74 Total: -15.39 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.88 Total: -41.95 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.05 Total: -8.31 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.07 -9.66 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003355971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.874 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds