Wall clock time and date at job start Tue Mar 31 2020 06:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47387 * 300.00426 * 3 2 1 6 6 H 1.48504 * 109.47177 * 60.00589 * 3 2 1 7 7 C 1.37879 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99575 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00283 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47476 * 180.02562 * 9 7 2 11 11 C 1.34166 * 125.16745 * 125.00031 * 10 9 7 12 12 C 1.37970 * 107.88550 * 179.97438 * 11 10 9 13 13 C 1.47274 * 126.80706 * 180.02562 * 12 11 10 14 14 O 1.21629 * 119.99924 * 179.97438 * 13 12 11 15 15 N 1.34774 * 119.99812 * 359.96353 * 13 12 11 16 16 C 1.39973 * 119.99931 * 174.72662 * 15 13 12 17 17 C 1.38865 * 120.04495 * 326.51781 * 16 15 13 18 18 C 1.38116 * 119.95485 * 179.74640 * 17 16 15 19 19 C 1.38470 * 120.04328 * 0.50610 * 18 17 16 20 20 F 1.35104 * 119.95165 * 179.74785 * 19 18 17 21 21 C 1.38476 * 120.09691 * 359.76944 * 19 18 17 22 22 C 1.38115 * 120.04380 * 359.97438 * 21 19 18 23 23 C 1.46605 * 106.38400 * 0.02562 * 12 11 10 24 24 C 1.48282 * 126.51203 * 179.97438 * 23 12 11 25 25 C 1.39385 * 120.12401 * 144.99528 * 24 23 12 26 26 C 1.38007 * 119.87123 * 179.97438 * 25 24 23 27 27 C 1.38324 * 120.12900 * 359.97438 * 26 25 24 28 28 C 1.38336 * 120.25097 * 0.02562 * 27 26 25 29 29 C 1.38002 * 120.12452 * 0.02562 * 28 27 26 30 30 N 1.31364 * 106.97296 * 0.26227 * 23 12 11 31 31 H 0.96998 * 119.99558 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.46784 * 59.99859 * 9 7 2 33 33 H 1.09005 * 109.46781 * 300.00470 * 9 7 2 34 34 H 1.07999 * 126.05468 * 0.02562 * 11 10 9 35 35 H 0.97007 * 120.00428 * 354.72135 * 15 13 12 36 36 H 1.08002 * 120.02164 * 359.97438 * 17 16 15 37 37 H 1.07992 * 119.97656 * 180.25523 * 18 17 16 38 38 H 1.07998 * 119.97973 * 179.97438 * 21 19 18 39 39 H 1.08002 * 120.02473 * 179.97438 * 22 21 19 40 40 H 1.07996 * 120.06528 * 359.96289 * 25 24 23 41 41 H 1.07998 * 119.93603 * 180.02562 * 26 25 24 42 42 H 1.08000 * 119.88079 * 179.74409 * 27 26 25 43 43 H 1.08003 * 119.93221 * 179.97438 * 28 27 26 44 44 H 1.08003 * 120.06422 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2269 -4.6089 0.8979 12 6 3.2613 -5.4578 0.5618 13 6 3.6593 -6.6868 1.2690 14 8 4.5967 -7.3463 0.8618 15 7 2.9850 -7.0806 2.3674 16 6 3.2907 -8.3038 2.9752 17 6 3.7000 -9.3817 2.2013 18 6 4.0062 -10.5863 2.8035 19 6 3.8953 -10.7227 4.1770 20 9 4.1904 -11.9035 4.7636 21 6 3.4819 -9.6509 4.9501 22 6 3.1797 -8.4429 4.3524 23 6 3.8856 -4.8938 -0.6388 24 6 5.0438 -5.4533 -1.3767 25 6 5.1118 -5.3369 -2.7640 26 6 6.1924 -5.8590 -3.4454 27 6 7.2069 -6.4965 -2.7543 28 6 7.1447 -6.6150 -1.3774 29 6 6.0685 -6.0977 -0.6856 30 7 3.2280 -3.7954 -0.9331 31 1 -0.4849 0.8401 0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6247 -2.5570 0.8897 34 1 1.5550 -4.7259 1.7352 35 1 2.2878 -6.5163 2.7369 36 1 3.7823 -9.2770 1.1295 37 1 4.3285 -11.4236 2.2023 38 1 3.3956 -9.7595 6.0211 39 1 2.8569 -7.6073 4.9557 40 1 4.3204 -4.8391 -3.3046 41 1 6.2464 -5.7690 -4.5203 42 1 8.0487 -6.9073 -3.2920 43 1 7.9395 -7.1142 -0.8430 44 1 6.0207 -6.1911 0.3893 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003355971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:03 Heat of formation + Delta-G solvation = 34.086450 kcal Electronic energy + Delta-G solvation = -30862.428048 eV Core-core repulsion = 26467.081217 eV Total energy + Delta-G solvation = -4395.346831 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.128 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -49.81350 -42.24605 -41.09804 -39.74472 -39.06380 -35.76416 -35.66857 -33.98929 -32.15694 -32.08874 -31.72861 -31.34297 -29.82569 -28.67674 -25.52719 -24.88578 -24.20596 -23.50896 -23.27948 -22.58658 -21.06746 -20.74215 -19.34934 -18.70138 -18.54437 -18.01294 -17.76529 -17.26670 -16.88767 -16.55231 -16.50362 -16.34073 -15.96514 -15.61005 -15.55195 -15.39699 -15.00092 -14.68767 -14.47904 -14.30043 -14.18657 -14.13104 -13.97875 -13.81695 -13.56546 -13.49547 -13.35725 -12.96765 -12.77218 -12.36672 -12.27583 -12.08489 -12.04258 -11.72822 -11.61216 -11.30173 -10.84496 -10.79845 -10.66587 -10.05874 -9.79853 -9.71241 -9.24127 -8.96390 -8.38626 -6.51038 -0.01719 0.17338 0.28561 0.59878 0.67849 1.34452 1.36609 1.40624 1.49499 1.63197 2.05923 2.30081 2.32644 2.72739 2.94944 3.01170 3.35651 3.39029 3.59691 3.79174 3.93936 4.04067 4.10570 4.19075 4.24512 4.30266 4.36833 4.37301 4.43456 4.61566 4.64979 4.73319 4.87475 4.92392 4.98468 5.05310 5.17866 5.23368 5.24736 5.28457 5.34526 5.45305 5.52037 5.64192 5.68872 5.71045 5.80591 5.96639 6.01833 6.14490 6.43200 6.57307 6.78319 7.17516 7.19435 8.69647 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.008332 B = 0.002709 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3359.727441 B =10333.124381 C =13122.809636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.965 3.035 4 H -0.278 1.278 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.264 3.736 10 N -0.332 5.332 11 C 0.118 3.882 12 C -0.321 4.321 13 C 0.605 3.395 14 O -0.540 6.540 15 N -0.660 5.660 16 C 0.138 3.862 17 C -0.108 4.108 18 C -0.137 4.137 19 C 0.062 3.938 20 F -0.149 7.149 21 C -0.128 4.128 22 C -0.112 4.112 23 C 0.137 3.863 24 C -0.043 4.043 25 C -0.109 4.109 26 C -0.133 4.133 27 C -0.106 4.106 28 C -0.134 4.134 29 C -0.068 4.068 30 N -0.310 5.310 31 H 0.273 0.727 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.226 0.774 35 H 0.424 0.576 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.144 0.856 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.920 -18.249 6.751 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.203 1.203 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.068 0.932 9 C 0.146 3.854 10 N -0.107 5.107 11 C -0.035 4.035 12 C -0.337 4.337 13 C 0.397 3.603 14 O -0.418 6.418 15 N -0.306 5.306 16 C 0.043 3.957 17 C -0.129 4.129 18 C -0.156 4.156 19 C 0.042 3.958 20 F -0.128 7.128 21 C -0.147 4.147 22 C -0.132 4.132 23 C -0.031 4.031 24 C -0.045 4.045 25 C -0.128 4.128 26 C -0.151 4.151 27 C -0.124 4.124 28 C -0.152 4.152 29 C -0.088 4.088 30 N -0.130 5.130 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.242 0.758 35 H 0.263 0.737 36 H 0.147 0.853 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.183 0.817 40 H 0.129 0.871 41 H 0.165 0.835 42 H 0.172 0.828 43 H 0.161 0.839 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.134 -17.405 5.630 19.635 hybrid contribution -0.359 0.617 0.505 0.874 sum 6.775 -16.789 6.135 19.116 Atomic orbital electron populations 1.69969 1.06965 1.28767 1.49729 1.25611 0.95766 1.02380 0.93869 0.85399 0.78401 0.78891 0.78364 1.20262 1.20111 1.19261 1.21352 0.93281 0.90935 1.53054 0.93188 1.19559 0.85604 0.81169 0.99090 1.49012 1.23134 1.19740 1.18862 1.23675 0.97637 0.87182 0.95045 1.20988 1.05923 1.02947 1.03819 1.17104 0.80982 0.83129 0.79133 1.90732 1.28490 1.56139 1.66489 1.43221 1.39220 1.19791 1.28363 1.17922 1.00282 0.85218 0.92238 1.21016 1.00033 0.91063 1.00761 1.21125 1.02225 0.98972 0.93266 1.17875 1.04042 0.82324 0.91583 1.91472 1.91387 1.45378 1.84525 1.21203 1.00426 0.91365 1.01683 1.21043 1.01679 0.98828 0.91659 1.22251 0.95212 0.91661 0.93934 1.17914 0.92602 1.01104 0.92912 1.21310 0.99271 0.99235 0.92995 1.21301 0.93678 0.99029 1.01054 1.21592 0.98921 0.97682 0.94212 1.21351 0.98231 1.00614 0.95003 1.21530 0.92054 0.94099 1.01077 1.77436 1.02248 1.18070 1.15295 0.91750 0.95479 0.90981 0.75806 0.73676 0.85327 0.83678 0.82004 0.81710 0.87058 0.83491 0.82769 0.83860 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.07 13.29 21.45 0.28 -48.79 16 2 C 0.02 1.30 5.46 84.65 0.46 1.77 16 3 Si 0.96 42.15 29.54 68.60 2.03 44.17 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.55 -29.10 9.20 25.60 0.24 -28.86 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.26 12.32 6.21 85.63 0.53 12.85 16 10 N -0.33 -13.81 3.62 -350.18 -1.27 -15.08 16 11 C 0.12 3.67 10.89 84.27 0.92 4.59 16 12 C -0.32 -10.60 6.26 -18.78 -0.12 -10.71 16 13 C 0.61 17.22 7.41 86.62 0.64 17.86 16 14 O -0.54 -17.44 10.13 -4.12 -0.04 -17.48 16 15 N -0.66 -13.40 5.33 -306.52 -1.63 -15.03 16 16 C 0.14 2.76 6.28 38.14 0.24 3.00 16 17 C -0.11 -2.44 8.65 22.39 0.19 -2.25 16 18 C -0.14 -2.72 10.02 22.30 0.22 -2.50 16 19 C 0.06 1.17 7.30 22.38 0.16 1.33 16 20 F -0.15 -3.02 17.27 44.97 0.78 -2.24 16 21 C -0.13 -1.92 10.02 22.30 0.22 -1.69 16 22 C -0.11 -1.65 9.96 22.39 0.22 -1.43 16 23 C 0.14 5.42 6.94 44.07 0.31 5.72 16 24 C -0.04 -1.56 5.73 -20.05 -0.11 -1.68 16 25 C -0.11 -3.57 9.76 22.49 0.22 -3.36 16 26 C -0.13 -3.40 10.03 22.24 0.22 -3.17 16 27 C -0.11 -2.40 10.04 22.31 0.22 -2.18 16 28 C -0.13 -3.46 10.03 22.24 0.22 -3.24 16 29 C -0.07 -2.20 7.78 22.49 0.17 -2.03 16 30 N -0.31 -13.96 12.27 -44.53 -0.55 -14.51 16 31 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 32 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 3.14 8.05 -2.38 -0.02 3.12 16 34 H 0.23 4.34 7.49 -2.91 -0.02 4.32 16 35 H 0.42 5.85 7.79 -92.70 -0.72 5.13 16 36 H 0.13 3.35 6.42 -2.91 -0.02 3.34 16 37 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 40 H 0.11 3.81 8.06 -2.91 -0.02 3.79 16 41 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 42 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 44 H 0.13 4.40 5.64 -2.91 -0.02 4.38 16 Total: -1.00 -68.47 386.79 5.14 -63.33 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.35 Total: 21.60 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 5.19 Total: -15.97 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -3.16 Total: -93.41 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.04 Total: -17.48 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.47 5.14 -63.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003355971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.418 kcal (2) G-P(sol) polarization free energy of solvation -68.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds