Wall clock time and date at job start Tue Mar 31 2020 07:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86804 * 119.99866 * 2 1 4 4 H 1.48497 * 109.47030 * 269.99897 * 3 2 1 5 5 H 1.48501 * 109.47292 * 29.99906 * 3 2 1 6 6 H 1.48501 * 109.47274 * 149.99570 * 3 2 1 7 7 C 1.38797 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00560 * 180.02562 * 7 2 1 9 9 O 1.34868 * 119.99488 * 0.02562 * 7 2 1 10 10 C 1.34774 * 116.99858 * 179.97438 * 9 7 2 11 11 O 1.21545 * 119.99908 * 359.97438 * 10 9 7 12 12 C 1.47345 * 120.00222 * 179.97438 * 10 9 7 13 13 C 1.39807 * 120.19695 * 359.97438 * 12 10 9 14 14 C 1.37758 * 119.89849 * 180.02562 * 13 12 10 15 15 C 1.38579 * 120.30737 * 359.72469 * 14 13 12 16 16 C 1.38058 * 120.40978 * 0.55805 * 15 14 13 17 17 C 1.38692 * 120.09074 * 359.44010 * 16 15 14 18 18 O 1.35653 * 120.15617 * 180.30083 * 17 16 15 19 19 C 1.42900 * 116.99449 * 0.02562 * 18 17 16 20 20 C 1.50704 * 109.46640 * 179.97438 * 19 18 17 21 21 C 1.38241 * 119.99749 * 359.72624 * 20 19 18 22 22 C 1.38194 * 120.02792 * 179.72666 * 21 20 19 23 23 C 1.38380 * 120.01301 * 0.54480 * 22 21 20 24 24 Cl 1.73600 * 120.00908 * 179.74785 * 23 22 21 25 25 C 1.38308 * 119.98948 * 359.72802 * 23 22 21 26 26 C 1.38341 * 119.99305 * 179.97438 * 20 19 18 27 27 Cl 1.73602 * 120.00431 * 0.02588 * 26 20 19 28 28 H 0.96997 * 119.99928 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.05049 * 359.97438 * 13 12 10 30 30 H 1.07992 * 119.84541 * 180.02562 * 14 13 12 31 31 H 1.08003 * 119.79303 * 180.29727 * 15 14 13 32 32 H 1.08002 * 119.95663 * 179.72426 * 16 15 14 33 33 H 1.08998 * 109.47452 * 299.99194 * 19 18 17 34 34 H 1.08995 * 109.47745 * 59.99859 * 19 18 17 35 35 H 1.08000 * 119.98154 * 359.97438 * 21 20 19 36 36 H 1.08000 * 119.99191 * 180.27110 * 22 21 20 37 37 H 1.08000 * 120.01666 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0083 -1.2020 0.0005 8 1 3.0883 -1.2020 0.0010 9 8 1.3340 -2.3699 0.0005 10 6 2.0681 -3.5002 0.0005 11 8 3.2818 -3.4366 0.0001 12 6 1.3992 -4.8131 0.0011 13 6 0.0033 -4.8912 0.0022 14 6 -0.6156 -6.1219 0.0033 15 6 0.1390 -7.2842 -0.0025 16 6 1.5182 -7.2220 0.0023 17 6 2.1588 -5.9918 0.0011 18 8 3.5138 -5.9292 -0.0004 19 6 4.2206 -7.1712 -0.0013 20 6 5.7039 -6.9049 -0.0035 21 6 6.1727 -5.6044 -0.0101 22 6 7.5328 -5.3595 -0.0065 23 6 8.4263 -6.4161 -0.0076 24 17 10.1348 -6.1083 -0.0097 25 6 7.9581 -7.7175 -0.0067 26 6 6.5963 -7.9620 -0.0042 27 17 6.0075 -9.5951 -0.0031 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5888 -3.9880 0.0030 30 1 -1.6939 -6.1812 0.0037 31 1 -0.3549 -8.2447 -0.0065 32 1 2.0991 -8.1324 0.0022 33 1 3.9549 -7.7411 0.8890 34 1 3.9528 -7.7411 -0.8909 35 1 5.4756 -4.7795 -0.0141 36 1 7.8983 -4.3432 -0.0072 37 1 8.6551 -8.5425 -0.0072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003476364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:22 Heat of formation + Delta-G solvation = -75.138114 kcal Electronic energy + Delta-G solvation = -26828.887508 eV Core-core repulsion = 22588.863362 eV Total energy + Delta-G solvation = -4240.024146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 366.026 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.40521 -39.58884 -38.51414 -37.22884 -37.00400 -36.47829 -35.01899 -32.32570 -32.17929 -31.13666 -30.98179 -29.59422 -26.71449 -25.56398 -23.50131 -23.25478 -22.39873 -21.24842 -20.27984 -18.06712 -17.72364 -17.62600 -16.86646 -16.11935 -16.07295 -15.81838 -15.19891 -15.06557 -14.47444 -14.45817 -14.36016 -14.23258 -14.04442 -13.92979 -13.67807 -12.81240 -12.72989 -12.47486 -12.40201 -12.22327 -11.81177 -11.64886 -11.41629 -11.40845 -11.20217 -11.19681 -11.15010 -10.99416 -10.88771 -10.44976 -10.40171 -9.81786 -9.17237 -8.94675 -8.86205 -8.76743 -8.57837 -8.04105 -6.43669 -4.06053 0.67650 0.89153 1.19845 1.53003 1.61345 1.99320 3.08818 3.13299 3.18673 3.20432 3.24512 3.50699 3.92422 4.31904 4.39795 4.50187 4.53303 4.76129 4.84832 4.95682 5.02735 5.08909 5.13534 5.17099 5.23086 5.35124 5.51150 5.59832 5.66904 5.79803 5.97144 6.01153 6.14399 6.25427 6.49458 6.51121 6.66605 6.90018 6.97947 7.37622 7.55876 7.94983 8.75183 9.05717 9.87967 10.74520 Molecular weight = 366.03amu Principal moments of inertia in cm(-1) A = 0.008380 B = 0.003051 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.314166 B = 9175.284668 C =12500.451694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.371 4.371 8 H 0.097 0.903 9 O -0.210 6.210 10 C 0.439 3.561 11 O -0.538 6.538 12 C -0.121 4.121 13 C -0.034 4.034 14 C -0.170 4.170 15 C -0.067 4.067 16 C -0.226 4.226 17 C 0.173 3.827 18 O -0.273 6.273 19 C 0.094 3.906 20 C -0.075 4.075 21 C -0.063 4.063 22 C -0.102 4.102 23 C -0.025 4.025 24 Cl -0.063 7.063 25 C -0.107 4.107 26 C -0.021 4.021 27 Cl -0.060 7.060 28 H 0.270 0.730 29 H 0.148 0.852 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.172 0.828 36 H 0.144 0.856 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.439 -18.025 -0.013 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.447 4.447 8 H 0.114 0.886 9 O -0.118 6.118 10 C 0.286 3.714 11 O -0.435 6.435 12 C -0.123 4.123 13 C -0.052 4.052 14 C -0.188 4.188 15 C -0.085 4.085 16 C -0.244 4.244 17 C 0.126 3.874 18 O -0.184 6.184 19 C 0.019 3.981 20 C -0.076 4.076 21 C -0.081 4.081 22 C -0.121 4.121 23 C -0.052 4.052 24 Cl -0.034 7.034 25 C -0.126 4.126 26 C -0.048 4.048 27 Cl -0.031 7.031 28 H 0.080 0.920 29 H 0.166 0.834 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.189 0.811 36 H 0.162 0.838 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.816 -17.776 -0.008 20.306 hybrid contribution 0.454 0.344 -0.009 0.570 sum 10.270 -17.432 -0.018 20.232 Atomic orbital electron populations 1.69972 1.06014 1.27754 1.46178 1.25339 0.95824 0.98843 0.96369 0.85680 0.79091 0.79750 0.78745 1.19882 1.20337 1.19051 1.21257 0.92472 0.79765 1.51254 0.88558 1.83900 1.39130 1.13178 1.75566 1.20434 0.85921 0.85088 0.79934 1.90600 1.14739 1.87611 1.50599 1.18851 0.92947 0.90005 1.10485 1.21535 0.92605 0.98992 0.92093 1.21029 1.00157 0.92062 1.05533 1.21007 0.92942 0.98485 0.96114 1.21081 0.95984 0.95823 1.11559 1.18903 0.82069 0.92779 0.93614 1.86315 1.15196 1.29470 1.87457 1.21490 0.87877 0.86286 1.02489 1.19504 0.93983 0.92827 1.01303 1.21471 0.95331 0.97181 0.94148 1.21317 0.92522 0.99165 0.99094 1.20817 0.85436 0.94093 1.04856 1.98381 1.12061 1.96049 1.96871 1.20731 0.93573 0.96112 1.02185 1.20389 0.92838 0.85480 1.06109 1.98377 1.88519 1.19380 1.96821 0.92029 0.83414 0.85539 0.85822 0.85319 0.90066 0.90074 0.81097 0.83848 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.74 13.67 55.49 0.76 -23.99 16 2 C 0.04 1.12 5.50 -17.52 -0.10 1.02 16 3 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.37 -10.81 9.65 30.94 0.30 -10.52 16 8 H 0.10 2.81 6.86 -52.49 -0.36 2.45 16 9 O -0.21 -5.96 8.99 -21.79 -0.20 -6.16 16 10 C 0.44 11.09 7.83 34.44 0.27 11.36 16 11 O -0.54 -14.19 13.79 -26.63 -0.37 -14.55 16 12 C -0.12 -2.46 5.89 -104.86 -0.62 -3.08 16 13 C -0.03 -0.60 9.61 -39.17 -0.38 -0.98 16 14 C -0.17 -2.34 10.02 -39.63 -0.40 -2.74 16 15 C -0.07 -0.83 10.03 -39.52 -0.40 -1.22 16 16 C -0.23 -3.04 9.03 -39.48 -0.36 -3.39 16 17 C 0.17 3.01 6.70 -38.67 -0.26 2.75 16 18 O -0.27 -4.71 6.69 -40.54 -0.27 -4.98 16 19 C 0.09 1.20 4.10 36.01 0.15 1.35 16 20 C -0.08 -0.96 5.88 -104.58 -0.62 -1.57 16 21 C -0.06 -0.89 9.37 -39.60 -0.37 -1.26 16 22 C -0.10 -1.24 9.83 -39.55 -0.39 -1.63 16 23 C -0.03 -0.28 6.32 -39.50 -0.25 -0.53 16 24 Cl -0.06 -0.62 28.96 -51.86 -1.50 -2.12 16 25 C -0.11 -1.10 9.62 -39.51 -0.38 -1.48 16 26 C -0.02 -0.23 6.31 -39.50 -0.25 -0.48 16 27 Cl -0.06 -0.57 27.99 -51.86 -1.45 -2.02 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.15 2.77 7.61 -52.49 -0.40 2.37 16 30 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 33 H 0.08 0.91 7.66 -51.93 -0.40 0.51 16 34 H 0.08 0.91 7.66 -51.93 -0.40 0.51 16 35 H 0.17 2.91 6.38 -52.49 -0.33 2.57 16 36 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -31.85 359.65 -9.72 -41.57 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.05 Total: 3.25 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -4.04 Total: -12.40 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.76 Total: -23.99 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.83 Total: -25.69 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -2.95 Total: -4.14 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.85 -9.72 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003476364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.573 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds