Wall clock time and date at job start Tue Mar 31 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38291 * 119.96912 * 2 1 4 4 C 1.38258 * 120.13744 * 180.02562 * 3 2 1 5 5 C 1.38139 * 120.06528 * 359.71553 * 4 3 2 6 6 C 1.50701 * 120.03866 * 180.30407 * 5 4 3 7 7 C 1.38821 * 119.92927 * 0.57985 * 5 4 3 8 8 N 1.40150 * 120.06721 * 179.69526 * 7 5 4 9 9 C 1.34505 * 124.43960 * 269.75453 * 8 7 5 10 10 O 1.21443 * 125.71850 * 0.03624 * 9 8 7 11 11 C 1.47965 * 108.56790 * 179.77276 * 9 8 7 12 12 C 1.38647 * 134.11153 * 180.25421 * 11 9 8 13 13 C 1.38378 * 119.91314 * 179.97438 * 12 11 9 14 14 C 1.39583 * 120.30865 * 0.02562 * 13 12 11 15 15 C 1.47778 * 119.93460 * 179.97438 * 14 13 12 16 16 O 1.21501 * 120.00148 * 179.97438 * 15 14 13 17 17 O 1.34695 * 120.00037 * 359.97438 * 15 14 13 18 18 C 1.34777 * 117.00446 * 180.02562 * 17 15 14 19 19 H 1.08005 * 119.99401 * 359.97438 * 18 17 15 20 20 C 1.38921 * 120.00100 * 180.02562 * 18 17 15 21 21 N 1.31339 * 120.00214 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00063 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47031 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47518 * 119.99599 * 22 20 18 25 25 H 1.48497 * 109.47104 * 239.99786 * 22 20 18 26 26 C 1.39899 * 120.13761 * 359.95488 * 14 13 12 27 27 C 1.38371 * 119.60938 * 0.04415 * 26 14 13 28 28 C 1.34504 * 124.43580 * 89.93008 * 8 7 5 29 29 O 1.21446 * 125.69716 * 0.02562 * 28 8 7 30 30 C 1.38099 * 119.96285 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46939 * 269.97660 * 1 2 3 32 32 H 1.09004 * 109.46901 * 29.97433 * 1 2 3 33 33 H 1.08999 * 109.47197 * 149.97633 * 1 2 3 34 34 H 1.08005 * 119.93306 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.97020 * 180.02562 * 4 3 2 36 36 H 1.09002 * 109.47064 * 270.28131 * 6 5 4 37 37 H 1.08996 * 109.46703 * 30.27685 * 6 5 4 38 38 H 1.08999 * 109.47358 * 150.27724 * 6 5 4 39 39 H 1.07996 * 120.03875 * 359.97438 * 12 11 9 40 40 H 1.08006 * 119.84258 * 180.02562 * 13 12 11 41 41 H 0.97004 * 120.00156 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.19325 * 180.02562 * 26 14 13 43 43 H 1.08001 * 120.03438 * 359.97237 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5804 1.2021 -0.0005 5 6 4.2760 0.0086 0.0049 6 6 5.7830 0.0137 0.0112 7 6 3.5854 -1.1956 -0.0013 8 7 4.2882 -2.4082 -0.0023 9 6 4.6697 -3.0653 -1.1122 10 8 4.4636 -2.7074 -2.2542 11 6 5.3882 -4.2942 -0.7085 12 6 5.9961 -5.3289 -1.4030 13 6 6.6005 -6.3633 -0.7105 14 6 6.6009 -6.3709 0.6853 15 6 7.2483 -7.4800 1.4165 16 8 7.2498 -7.4876 2.6315 17 8 7.8368 -8.4825 0.7360 18 6 8.4082 -9.4629 1.4632 19 1 8.3810 -9.4208 2.5421 20 6 9.0332 -10.5269 0.8250 21 7 9.0667 -10.5777 -0.4870 22 14 9.8258 -11.8853 1.8328 23 1 9.6522 -11.5946 3.2788 24 1 9.1817 -13.1832 1.5076 25 1 11.2743 -11.9578 1.5134 26 6 5.9901 -5.3305 1.3936 27 6 5.3854 -4.2956 0.7023 28 6 4.6666 -3.0689 1.1064 29 8 4.4562 -2.7147 2.2489 30 6 2.1967 -1.1964 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8903 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6562 2.1324 0.0004 35 1 4.1172 2.1393 -0.0001 36 1 6.1506 0.0179 -1.0149 37 1 6.1410 0.9035 0.5290 38 1 6.1472 -0.8764 0.5241 39 1 5.9979 -5.3274 -2.4829 40 1 7.0741 -7.1685 -1.2526 41 1 9.5028 -11.3208 -0.9326 42 1 5.9903 -5.3353 2.4736 43 1 1.6567 -2.1317 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003517290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:01 Heat of formation + Delta-G solvation = -65.933290 kcal Electronic energy + Delta-G solvation = -31148.227817 eV Core-core repulsion = 26703.878264 eV Total energy + Delta-G solvation = -4444.349553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.114 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.70987 -39.90833 -39.31809 -38.73191 -37.92493 -36.03890 -35.37639 -34.17060 -32.64189 -32.32401 -31.13605 -30.00548 -29.59786 -26.35043 -25.38016 -25.20647 -24.56266 -22.98385 -22.48613 -21.34966 -20.63534 -19.77680 -18.16335 -17.80438 -17.71328 -17.12831 -16.93358 -16.05197 -15.87118 -15.46977 -15.34948 -15.00023 -14.76066 -14.72696 -14.40738 -14.30861 -14.22120 -14.10488 -14.02127 -13.57809 -13.27924 -13.21583 -13.00955 -12.64633 -12.53465 -12.34445 -11.98539 -11.93586 -11.84162 -11.65820 -11.56412 -11.40431 -10.68405 -10.63244 -10.57057 -10.53581 -10.19027 -10.07704 -9.35200 -9.24431 -9.23019 -9.14939 -8.82686 -8.81162 -6.70574 -4.28303 -0.13526 0.78697 0.88745 0.97634 1.78021 2.07367 2.74930 2.96962 3.06107 3.13631 3.18271 3.21793 3.54034 3.81106 3.97399 4.16305 4.30031 4.40174 4.44076 4.55701 4.60435 4.73614 4.78678 4.92609 5.03824 5.07654 5.17783 5.20858 5.26523 5.31021 5.32759 5.34647 5.40487 5.62882 5.68893 5.73754 5.78686 5.84441 5.94933 5.96776 6.13604 6.17812 6.26101 6.38483 6.54281 6.56647 6.66499 7.05162 7.15152 7.56024 7.67620 8.46453 8.77699 9.55148 10.45928 Molecular weight = 365.11amu Principal moments of inertia in cm(-1) A = 0.023965 B = 0.001973 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.089422 B =14190.489101 C =14436.121812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.102 4.102 4 C -0.109 4.109 5 C -0.068 4.068 6 C -0.118 4.118 7 C 0.123 3.877 8 N -0.535 5.535 9 C 0.580 3.420 10 O -0.458 6.458 11 C -0.140 4.140 12 C -0.046 4.046 13 C -0.053 4.053 14 C -0.056 4.056 15 C 0.419 3.581 16 O -0.547 6.547 17 O -0.196 6.196 18 C -0.367 4.367 19 H 0.103 0.897 20 C 0.042 3.958 21 N -0.847 5.847 22 Si 0.948 3.052 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.273 1.273 26 C 0.004 3.996 27 C -0.154 4.154 28 C 0.581 3.419 29 O -0.454 6.454 30 C -0.094 4.094 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.147 0.853 40 H 0.162 0.838 41 H 0.275 0.725 42 H 0.153 0.847 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.375 19.684 -3.525 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.120 4.120 4 C -0.128 4.128 5 C -0.069 4.069 6 C -0.175 4.175 7 C 0.035 3.965 8 N -0.275 5.275 9 C 0.370 3.630 10 O -0.328 6.328 11 C -0.144 4.144 12 C -0.065 4.065 13 C -0.071 4.071 14 C -0.057 4.057 15 C 0.267 3.733 16 O -0.446 6.446 17 O -0.102 6.102 18 C -0.442 4.442 19 H 0.121 0.879 20 C -0.165 4.165 21 N -0.482 5.482 22 Si 0.772 3.228 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.015 4.015 27 C -0.158 4.158 28 C 0.371 3.629 29 O -0.324 6.324 30 C -0.113 4.113 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.164 0.836 40 H 0.180 0.820 41 H 0.085 0.915 42 H 0.171 0.829 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.524 19.941 -3.397 23.280 hybrid contribution 0.368 -0.687 0.403 0.877 sum -11.156 19.254 -2.994 22.453 Atomic orbital electron populations 1.20795 0.90432 1.03093 1.02664 1.19771 0.96450 0.92300 1.00029 1.21145 0.94077 0.97715 0.99101 1.20925 0.94100 0.97019 1.00709 1.20013 0.96671 0.91921 0.98284 1.20802 0.90550 1.03270 1.02866 1.17233 0.90345 0.83060 1.05825 1.43911 1.53086 1.21369 1.09107 1.18498 0.77429 0.83330 0.83716 1.90792 1.52644 1.70204 1.19173 1.20473 1.02983 0.96586 0.94332 1.20738 0.94053 0.90781 1.00905 1.21960 0.94388 0.97440 0.93351 1.19602 0.98461 0.94168 0.93511 1.20424 0.82619 0.84086 0.86143 1.90674 1.60890 1.78489 1.14507 1.83823 1.58196 1.28471 1.39755 1.21514 1.32452 0.97984 0.92233 0.87926 1.25485 0.96612 0.98140 0.96245 1.69930 1.39282 1.31187 1.07784 0.85526 0.78618 0.79054 0.79645 1.18615 1.19876 1.19880 1.20724 0.90426 0.88805 1.01503 1.20130 1.04442 0.96916 0.94269 1.18410 0.77492 0.83243 0.83764 1.90811 1.52274 1.70160 1.19119 1.21088 0.92219 0.98777 0.99214 0.90837 0.91186 0.91319 0.85303 0.85006 0.90460 0.90574 0.91859 0.83563 0.82021 0.91495 0.82930 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.08 -0.79 5.88 -104.65 -0.62 -1.40 16 3 C -0.10 -0.85 9.70 -39.55 -0.38 -1.24 16 4 C -0.11 -0.99 9.70 -39.61 -0.38 -1.37 16 5 C -0.07 -0.77 5.90 -104.44 -0.62 -1.39 16 6 C -0.12 -1.21 9.77 36.01 0.35 -0.86 16 7 C 0.12 1.60 5.10 -83.61 -0.43 1.18 16 8 N -0.53 -7.48 1.76 -61.46 -0.11 -7.59 16 9 C 0.58 8.30 7.99 -12.40 -0.10 8.20 16 10 O -0.46 -7.26 17.77 5.42 0.10 -7.16 16 11 C -0.14 -1.95 6.41 -104.68 -0.67 -2.62 16 12 C -0.05 -0.60 10.07 -39.38 -0.40 -1.00 16 13 C -0.05 -0.81 9.61 -39.03 -0.37 -1.18 16 14 C -0.06 -1.00 5.88 -104.87 -0.62 -1.62 16 15 C 0.42 9.75 7.83 34.63 0.27 10.02 16 16 O -0.55 -13.98 15.58 -19.27 -0.30 -14.28 16 17 O -0.20 -5.12 8.96 -21.32 -0.19 -5.31 16 18 C -0.37 -10.00 9.65 30.99 0.30 -9.70 16 19 H 0.10 2.83 6.86 -52.48 -0.36 2.47 16 20 C 0.04 1.08 5.50 -17.51 -0.10 0.98 16 21 N -0.85 -22.61 13.67 55.49 0.76 -21.85 16 22 Si 0.95 19.67 29.55 -169.99 -5.02 14.65 16 23 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 C 0.00 0.07 9.63 -38.91 -0.37 -0.30 16 27 C -0.15 -2.30 6.39 -104.85 -0.67 -2.97 16 28 C 0.58 8.78 7.39 -12.47 -0.09 8.68 16 29 O -0.45 -7.77 17.77 5.41 0.10 -7.67 16 30 C -0.09 -1.08 9.62 -39.40 -0.38 -1.46 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.06 0.74 6.97 -51.93 -0.36 0.38 16 39 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.16 2.52 7.58 -52.48 -0.40 2.12 16 41 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.15 2.52 7.65 -52.49 -0.40 2.12 16 43 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -32.13 388.53 -8.18 -40.31 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.45 Total: 1.47 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -4.91 Total: 1.57 kcal Atomic # 7 Polarization: -30.09 SS G_CDS: 0.65 Total: -29.44 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.30 Total: -34.43 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.13 -8.18 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003517290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.618 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds