Wall clock time and date at job start Tue Mar 31 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99984 * 2 1 4 4 H 1.48496 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47099 * 300.00602 * 3 2 1 6 6 H 1.48502 * 109.46858 * 60.00493 * 3 2 1 7 7 C 1.37880 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99272 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00097 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46800 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99529 * 90.00530 * 10 9 7 12 12 O 1.21293 * 119.99867 * 175.27051 * 11 10 9 13 13 C 1.50700 * 120.00270 * 355.26210 * 11 10 9 14 14 O 1.42900 * 109.47109 * 180.02562 * 13 11 10 15 15 C 1.34932 * 116.99832 * 179.97438 * 14 13 11 16 16 O 1.21667 * 120.00146 * 0.02562 * 15 14 13 17 17 C 1.46178 * 120.00331 * 180.02562 * 15 14 13 18 18 C 1.34110 * 119.23704 * 0.02562 * 17 15 14 19 19 O 1.34948 * 121.67644 * 180.34374 * 18 17 15 20 20 C 1.43239 * 116.77037 * 342.81197 * 19 18 17 21 21 C 1.53549 * 108.09609 * 45.51374 * 20 19 18 22 22 O 1.36218 * 119.24421 * 179.73283 * 17 15 14 23 23 C 1.40028 * 120.00199 * 269.99865 * 10 9 7 24 24 C 1.38853 * 120.04089 * 111.85390 * 23 10 9 25 25 C 1.38108 * 119.95332 * 179.77176 * 24 23 10 26 26 C 1.38484 * 120.04468 * 0.50362 * 25 24 23 27 27 F 1.35096 * 119.95171 * 179.72463 * 26 25 24 28 28 C 1.38472 * 120.08705 * 359.74944 * 26 25 24 29 29 C 1.38109 * 120.04511 * 359.97438 * 28 26 25 30 30 H 0.96998 * 120.00030 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47208 * 60.00730 * 9 7 2 32 32 H 1.08997 * 109.47433 * 299.99923 * 9 7 2 33 33 H 1.09001 * 109.46864 * 300.00349 * 13 11 10 34 34 H 1.08996 * 109.46649 * 60.00171 * 13 11 10 35 35 H 1.08004 * 119.15907 * 0.32372 * 18 17 15 36 36 H 1.08996 * 109.74152 * 165.16481 * 20 19 18 37 37 H 1.09002 * 109.73554 * 285.86508 * 20 19 18 38 38 H 1.08994 * 109.75237 * 61.44894 * 21 20 19 39 39 H 1.08999 * 109.75326 * 182.18740 * 21 20 19 40 40 H 1.08001 * 120.02338 * 0.02562 * 24 23 10 41 41 H 1.08002 * 119.97919 * 180.23252 * 25 24 23 42 42 H 1.08000 * 119.97690 * 179.97438 * 28 26 25 43 43 H 1.08001 * 120.01860 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.6417 -4.1254 1.1649 12 8 3.3621 -5.1013 1.1658 13 6 2.2374 -3.4862 2.4684 14 8 2.8251 -4.2056 3.5542 15 6 2.5606 -3.7588 4.7996 16 8 1.8492 -2.7845 4.9581 17 6 3.1285 -4.4452 5.9585 18 6 3.9110 -5.5173 5.7663 19 8 4.4552 -6.1921 6.8005 20 6 4.4857 -5.5197 8.0649 21 6 3.1106 -4.8770 8.2966 22 8 2.8557 -3.9777 7.2085 23 6 2.6571 -4.1444 -1.2150 24 6 3.9824 -3.9779 -1.5942 25 6 4.4294 -4.5071 -2.7890 26 6 3.5544 -5.1943 -3.6135 27 9 3.9923 -5.7064 -4.7844 28 6 2.2310 -5.3569 -3.2395 29 6 1.7814 -4.8341 -2.0429 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8904 32 1 0.6247 -2.5571 0.8896 33 1 2.5826 -2.4525 2.4886 34 1 1.1517 -3.5086 2.5626 35 1 4.1103 -5.8493 4.7580 36 1 4.6951 -6.2370 8.8584 37 1 5.2554 -4.7480 8.0529 38 1 2.3431 -5.6503 8.3280 39 1 3.1159 -4.3241 9.2360 40 1 4.6642 -3.4386 -0.9534 41 1 5.4611 -4.3812 -3.0826 42 1 1.5500 -5.8928 -3.8841 43 1 0.7491 -4.9607 -1.7518 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003536381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:57 Heat of formation + Delta-G solvation = -175.757612 kcal Electronic energy + Delta-G solvation = -32330.268499 eV Core-core repulsion = 27450.387381 eV Total energy + Delta-G solvation = -4879.881118 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.120 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.68231 -41.35295 -40.41048 -39.70628 -37.98184 -37.34323 -36.10950 -35.15017 -32.73998 -32.57316 -30.93009 -30.17016 -29.33896 -27.80411 -26.98999 -25.65241 -23.42588 -22.97934 -22.57697 -21.98434 -20.03898 -19.37591 -18.67868 -18.34420 -17.47544 -17.14667 -16.99377 -16.69035 -16.42711 -16.20452 -15.98255 -15.93583 -15.36198 -15.14790 -15.10781 -14.56994 -14.46743 -14.40715 -14.18655 -14.00456 -13.52293 -13.33876 -13.17400 -12.70642 -12.55202 -12.53192 -12.37916 -12.24384 -11.97701 -11.61791 -11.35239 -11.15303 -11.02235 -10.91485 -10.86900 -10.48453 -10.38049 -10.31316 -9.95508 -9.44391 -8.87046 -8.69827 -8.65813 -8.49487 -7.84125 -6.29736 -4.38612 1.00483 1.34617 1.49046 1.98916 2.76288 2.93133 2.98441 3.18698 3.26959 3.28055 3.32353 3.82761 3.86108 3.94581 4.26128 4.48221 4.48956 4.57209 4.65655 4.92079 4.97184 4.99251 5.04819 5.05438 5.07786 5.14205 5.45174 5.48959 5.60347 5.64538 5.73176 5.79547 6.10921 6.32549 6.37175 6.39461 6.49422 6.56150 6.68333 6.92516 7.01812 7.02612 7.37142 7.62908 7.82453 7.85670 7.90674 8.54394 8.70850 9.30534 10.77453 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.007840 B = 0.002975 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3570.555248 B = 9409.305915 C =12186.905643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.070 3.930 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.548 4.548 8 H 0.065 0.935 9 C 0.233 3.767 10 N -0.556 5.556 11 C 0.527 3.473 12 O -0.537 6.537 13 C 0.059 3.941 14 O -0.331 6.331 15 C 0.522 3.478 16 O -0.482 6.482 17 C -0.070 4.070 18 C 0.053 3.947 19 O -0.298 6.298 20 C 0.010 3.990 21 C 0.021 3.979 22 O -0.287 6.287 23 C 0.167 3.833 24 C -0.077 4.077 25 C -0.144 4.144 26 C 0.082 3.918 27 F -0.146 7.146 28 C -0.144 4.144 29 C -0.093 4.093 30 H 0.267 0.733 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.200 0.800 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.201 -11.402 9.111 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.586 4.586 8 H 0.083 0.917 9 C 0.115 3.885 10 N -0.285 5.285 11 C 0.315 3.685 12 O -0.415 6.415 13 C -0.018 4.018 14 O -0.247 6.247 15 C 0.365 3.635 16 O -0.370 6.370 17 C -0.117 4.117 18 C -0.013 4.013 19 O -0.209 6.209 20 C -0.065 4.065 21 C -0.055 4.055 22 O -0.202 6.202 23 C 0.076 3.924 24 C -0.097 4.097 25 C -0.163 4.163 26 C 0.063 3.937 27 F -0.125 7.125 28 C -0.163 4.163 29 C -0.113 4.113 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.136 0.864 34 H 0.121 0.879 35 H 0.216 0.784 36 H 0.141 0.859 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.185 -11.487 9.184 15.955 hybrid contribution 0.228 1.277 -0.108 1.301 sum 6.413 -10.211 9.075 15.091 Atomic orbital electron populations 1.69909 1.06047 1.27606 1.48746 1.24918 0.94878 0.99413 0.94218 0.86432 0.80130 0.83039 0.77909 1.19545 1.20704 1.20593 1.21422 0.93719 0.90089 1.53364 0.91727 1.19731 0.87132 0.82055 0.99535 1.45816 1.45763 1.35009 1.01887 1.19875 0.80416 0.83455 0.84710 1.90684 1.37355 1.26002 1.87431 1.22466 0.99995 0.97152 0.82147 1.86016 1.68838 1.55983 1.13852 1.19700 0.78972 0.82371 0.82419 1.90967 1.34670 1.25082 1.86254 1.18975 1.05993 1.01447 0.85262 1.23731 0.91442 0.92744 0.93429 1.86138 1.75204 1.42165 1.17421 1.23792 0.98152 0.99212 0.85335 1.23705 0.96775 0.94889 0.90115 1.86446 1.83439 1.39452 1.10876 1.17528 0.92524 0.95074 0.87296 1.21117 0.95579 0.97673 0.95312 1.20933 0.99997 1.00390 0.94995 1.17641 0.93343 0.99552 0.83188 1.91458 1.90142 1.85316 1.45565 1.20890 0.94213 1.03227 0.98015 1.21071 1.00391 0.96089 0.93752 0.92282 0.93663 0.93766 0.86361 0.87898 0.78372 0.85918 0.89745 0.90247 0.85827 0.85024 0.84816 0.84744 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 13.29 55.43 0.74 -22.97 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.55 -13.54 9.16 -34.44 -0.32 -13.85 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.23 5.19 4.88 -5.19 -0.03 5.16 16 10 N -0.56 -11.04 2.51 -114.72 -0.29 -11.32 16 11 C 0.53 10.37 7.61 -10.98 -0.08 10.28 16 12 O -0.54 -11.33 16.27 -14.36 -0.23 -11.57 16 13 C 0.06 1.08 4.52 36.01 0.16 1.25 16 14 O -0.33 -5.65 8.66 -47.89 -0.41 -6.06 16 15 C 0.52 8.86 7.84 33.92 0.27 9.12 16 16 O -0.48 -9.74 16.69 -24.95 -0.42 -10.16 16 17 C -0.07 -0.98 6.61 -37.85 -0.25 -1.23 16 18 C 0.05 0.61 10.62 29.28 0.31 0.92 16 19 O -0.30 -2.97 10.47 -30.64 -0.32 -3.29 16 20 C 0.01 0.07 7.29 37.44 0.27 0.34 16 21 C 0.02 0.16 7.32 37.44 0.27 0.44 16 22 O -0.29 -3.83 10.29 -45.80 -0.47 -4.30 16 23 C 0.17 3.10 4.75 -83.66 -0.40 2.70 16 24 C -0.08 -1.34 9.56 -39.40 -0.38 -1.71 16 25 C -0.14 -2.18 10.02 -39.54 -0.40 -2.58 16 26 C 0.08 1.24 7.30 -39.40 -0.29 0.95 16 27 F -0.15 -2.14 17.26 2.25 0.04 -2.10 16 28 C -0.14 -2.09 10.02 -39.54 -0.40 -2.49 16 29 C -0.09 -1.52 9.68 -39.40 -0.38 -1.90 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.05 1.05 7.86 -51.93 -0.41 0.65 16 32 H 0.04 1.00 6.47 -51.93 -0.34 0.66 16 33 H 0.12 2.29 7.90 -51.93 -0.41 1.88 16 34 H 0.10 1.83 7.24 -51.93 -0.38 1.45 16 35 H 0.20 2.17 7.33 -52.48 -0.38 1.78 16 36 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 41 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -31.65 386.63 -7.13 -38.77 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.84 Total: 2.88 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -1.72 Total: 9.10 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.45 Total: -34.30 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.86 Total: -35.38 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.65 -7.13 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003536381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.985 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds