Wall clock time and date at job start Tue Mar 31 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99520 * 2 1 4 4 H 1.48503 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47243 * 299.99548 * 3 2 1 6 6 H 1.48496 * 109.47574 * 60.00132 * 3 2 1 7 7 C 1.37875 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00126 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47387 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47183 * 180.02562 * 10 9 7 12 12 C 1.39539 * 123.87939 * 269.99901 * 11 10 9 13 13 C 1.39366 * 130.81958 * 0.02562 * 12 11 10 14 14 C 1.37936 * 120.13419 * 180.02562 * 13 12 11 15 15 C 1.38311 * 120.37040 * 359.95709 * 14 13 12 16 16 C 1.38393 * 119.82491 * 0.02562 * 15 14 13 17 17 C 1.37684 * 119.91749 * 0.02562 * 16 15 14 18 18 C 1.51134 * 132.85232 * 179.97438 * 17 16 15 19 19 O 1.42905 * 110.51002 * 298.64754 * 18 17 16 20 20 C 1.52996 * 110.62503 * 61.29659 * 18 17 16 21 21 C 1.50705 * 109.46759 * 178.01981 * 20 18 17 22 22 O 1.21252 * 120.00253 * 359.97438 * 21 20 18 23 23 C 1.47170 * 119.99847 * 179.97438 * 21 20 18 24 24 C 1.39858 * 120.17388 * 359.72419 * 23 21 20 25 25 C 1.37881 * 119.82567 * 179.81051 * 24 23 21 26 26 C 1.38407 * 120.17463 * 0.44054 * 25 24 23 27 27 C 1.38405 * 120.34424 * 359.79149 * 26 25 24 28 28 C 1.37886 * 120.17757 * 359.97438 * 27 26 25 29 29 C 1.34376 * 123.88023 * 89.97708 * 11 10 9 30 30 O 1.21281 * 126.43724 * 0.03704 * 29 11 10 31 31 H 0.96998 * 120.00284 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.46784 * 60.00059 * 9 7 2 33 33 H 1.09004 * 109.47354 * 300.00371 * 9 7 2 34 34 H 1.09004 * 109.47167 * 60.00224 * 10 9 7 35 35 H 1.09004 * 109.47120 * 300.00445 * 10 9 7 36 36 H 1.08003 * 119.93588 * 359.97311 * 13 12 11 37 37 H 1.08001 * 119.81957 * 179.97438 * 14 13 12 38 38 H 1.07995 * 120.08600 * 180.02562 * 15 14 13 39 39 H 1.08005 * 120.04325 * 179.97438 * 16 15 14 40 40 H 0.96696 * 114.00036 * 183.89952 * 19 18 17 41 41 H 1.09002 * 109.47250 * 298.01309 * 20 18 17 42 42 H 1.09000 * 109.47644 * 58.01963 * 20 18 17 43 43 H 1.08008 * 120.08160 * 0.02562 * 24 23 21 44 44 H 1.08000 * 119.91539 * 180.20487 * 25 24 23 45 45 H 1.07996 * 119.82614 * 179.76529 * 26 25 24 46 46 H 1.07998 * 119.91391 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.09168 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0027 11 7 1.5130 -4.9307 0.0033 12 6 1.1237 -5.6037 1.1620 13 6 1.3067 -5.2842 2.5061 14 6 0.8230 -6.1222 3.4892 15 6 0.1529 -7.2837 3.1505 16 6 -0.0330 -7.6075 1.8179 17 6 0.4498 -6.7733 0.8347 18 6 0.4154 -6.8361 -0.6749 19 8 1.1008 -7.9992 -1.1434 20 6 -1.0281 -6.8255 -1.1820 21 6 -1.0312 -6.8397 -2.6889 22 8 0.0176 -6.8562 -3.2973 23 6 -2.3072 -6.8337 -3.4222 24 6 -3.5190 -6.8205 -2.7242 25 6 -4.7102 -6.8109 -3.4185 26 6 -4.7089 -6.8235 -4.8025 27 6 -3.5139 -6.8414 -5.5005 28 6 -2.3142 -6.8463 -4.8207 29 6 1.1384 -5.5799 -1.1121 30 8 1.3432 -5.2270 -2.2542 31 1 -0.4850 0.8400 0.0004 32 1 0.6242 -2.5575 -0.8881 33 1 0.6248 -2.5564 0.8919 34 1 2.8721 -3.6035 0.8927 35 1 2.8721 -3.6050 -0.8873 36 1 1.8291 -4.3790 2.7786 37 1 0.9681 -5.8698 4.5293 38 1 -0.2242 -7.9363 3.9240 39 1 -0.5554 -8.5139 1.5495 40 1 1.1612 -8.0589 -2.1066 41 1 -1.5506 -7.7065 -0.8093 42 1 -1.5317 -5.9267 -0.8261 43 1 -3.5216 -6.8143 -1.6441 44 1 -5.6469 -6.7974 -2.8809 45 1 -5.6453 -6.8198 -5.3406 46 1 -3.5210 -6.8516 -6.5804 47 1 -1.3826 -6.8608 -5.3667 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004166005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:31 Heat of formation + Delta-G solvation = -48.560899 kcal Electronic energy + Delta-G solvation = -32769.555679 eV Core-core repulsion = 28461.792544 eV Total energy + Delta-G solvation = -4307.763135 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -41.77906 -40.04998 -38.54010 -38.00405 -36.44686 -35.69698 -33.56215 -32.64158 -31.74936 -31.18211 -30.56197 -29.87685 -28.66942 -26.44150 -24.80470 -23.63110 -22.62212 -22.37559 -21.59801 -21.16989 -20.12372 -19.62461 -17.88094 -17.55185 -16.82108 -16.62080 -16.10257 -15.88013 -15.69530 -15.54051 -15.26514 -14.86572 -14.52039 -14.42161 -14.19624 -14.09186 -13.94795 -13.76088 -13.60779 -13.22944 -12.93300 -12.78716 -12.72871 -12.42259 -12.34987 -12.24916 -11.91904 -11.85167 -11.56604 -11.32564 -11.12123 -11.01712 -10.85604 -10.74861 -10.33928 -10.13231 -9.81552 -9.51375 -9.40423 -9.23253 -9.18284 -9.12169 -8.88281 -8.44757 -7.61368 -6.09158 -4.13370 0.49199 1.14408 1.20493 1.42698 2.28849 2.71484 3.10790 3.26942 3.34749 3.38935 3.59342 3.69199 3.88450 4.16180 4.22788 4.32478 4.40068 4.58813 4.69380 4.75196 4.80995 4.93988 5.05809 5.10479 5.15666 5.23108 5.27367 5.31012 5.36060 5.48982 5.57229 5.62234 5.67462 5.74792 5.86331 5.94407 6.08192 6.17619 6.20503 6.21522 6.28864 6.43397 6.56017 6.61625 6.64283 6.79094 6.95418 7.30582 7.33156 7.53648 7.59748 7.67234 7.87553 8.19042 8.30965 8.92362 9.51378 11.02246 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007155 B = 0.003495 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3912.214468 B = 8010.472152 C =10391.823449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.109 3.891 11 N -0.544 5.544 12 C 0.179 3.821 13 C -0.141 4.141 14 C -0.074 4.074 15 C -0.159 4.159 16 C -0.046 4.046 17 C -0.150 4.150 18 C 0.164 3.836 19 O -0.532 6.532 20 C -0.178 4.178 21 C 0.388 3.612 22 O -0.419 6.419 23 C -0.161 4.161 24 C -0.074 4.074 25 C -0.133 4.133 26 C -0.092 4.092 27 C -0.133 4.133 28 C -0.060 4.060 29 C 0.499 3.501 30 O -0.464 6.464 31 H 0.261 0.739 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.388 0.612 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.133 0.867 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 -19.266 -0.009 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.010 4.010 11 N -0.265 5.265 12 C 0.081 3.919 13 C -0.162 4.162 14 C -0.092 4.092 15 C -0.178 4.178 16 C -0.065 4.065 17 C -0.153 4.153 18 C 0.119 3.881 19 O -0.342 6.342 20 C -0.216 4.216 21 C 0.264 3.736 22 O -0.293 6.293 23 C -0.162 4.162 24 C -0.092 4.092 25 C -0.151 4.151 26 C -0.110 4.110 27 C -0.151 4.151 28 C -0.078 4.078 29 C 0.284 3.716 30 O -0.334 6.334 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.241 0.759 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.525 -18.950 -0.494 20.785 hybrid contribution 0.204 1.360 -0.524 1.472 sum -8.320 -17.590 -1.018 19.485 Atomic orbital electron populations 1.69979 1.06130 1.26732 1.50127 1.24990 0.94857 0.99363 0.94909 0.86476 0.80111 0.83425 0.77664 1.19593 1.20897 1.20880 1.21062 0.93105 0.90397 1.51665 0.92277 1.19408 0.94216 0.90834 0.97976 1.22172 0.95696 0.80661 1.02483 1.46298 1.52725 1.22985 1.04534 1.18295 0.93876 0.91339 0.88366 1.20507 1.04600 1.01894 0.89189 1.20911 0.95863 0.93560 0.98885 1.20964 1.02972 0.98404 0.95468 1.20181 0.97326 0.97596 0.91393 1.19353 1.06183 0.97465 0.92291 1.20113 0.90766 0.85889 0.91299 1.86539 1.78331 1.40214 1.29112 1.22577 0.97495 1.06595 0.94933 1.22343 0.88301 0.72308 0.90606 1.90551 1.33512 1.34156 1.71068 1.20455 0.94487 1.06628 0.94656 1.21504 0.91568 0.95810 1.00347 1.21150 0.98150 1.01344 0.94444 1.21432 0.98297 0.96740 0.94504 1.21171 0.92218 1.01405 1.00349 1.21470 0.99002 0.94178 0.93147 1.21096 0.79831 0.85721 0.84927 1.90819 1.54017 1.70157 1.18438 0.92887 0.96106 0.96039 0.90705 0.90281 0.84969 0.85292 0.85544 0.85674 0.75885 0.86295 0.86648 0.84954 0.85305 0.85616 0.85390 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 10 C 0.11 2.38 5.67 -4.05 -0.02 2.36 16 11 N -0.54 -10.84 2.73 -113.26 -0.31 -11.15 16 12 C 0.18 3.06 6.69 -83.69 -0.56 2.50 16 13 C -0.14 -2.10 9.74 -39.27 -0.38 -2.48 16 14 C -0.07 -0.86 10.02 -39.67 -0.40 -1.26 16 15 C -0.16 -1.70 10.07 -39.50 -0.40 -2.09 16 16 C -0.05 -0.55 10.04 -39.73 -0.40 -0.95 16 17 C -0.15 -2.26 5.36 -104.37 -0.56 -2.82 16 18 C 0.16 2.61 1.02 -92.38 -0.09 2.51 16 19 O -0.53 -8.32 13.04 -53.55 -0.70 -9.02 16 20 C -0.18 -2.29 3.67 -27.88 -0.10 -2.39 16 21 C 0.39 5.51 6.61 -30.68 -0.20 5.31 16 22 O -0.42 -7.14 11.34 -24.91 -0.28 -7.42 16 23 C -0.16 -1.98 5.87 -105.06 -0.62 -2.60 16 24 C -0.07 -0.74 9.47 -39.11 -0.37 -1.11 16 25 C -0.13 -1.14 10.03 -39.65 -0.40 -1.54 16 26 C -0.09 -0.77 10.04 -39.46 -0.40 -1.17 16 27 C -0.13 -1.26 10.03 -39.65 -0.40 -1.66 16 28 C -0.06 -0.70 9.60 -39.10 -0.38 -1.08 16 29 C 0.50 10.06 6.98 -10.83 -0.08 9.98 16 30 O -0.46 -10.72 14.85 -18.24 -0.27 -10.99 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.48 7.62 -51.93 -0.40 1.08 16 35 H 0.08 1.78 7.95 -51.93 -0.41 1.37 16 36 H 0.13 1.96 7.70 -52.48 -0.40 1.56 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 40 H 0.39 5.79 6.61 45.56 0.30 6.09 16 41 H 0.12 1.11 8.08 -51.93 -0.42 0.69 16 42 H 0.12 1.48 8.10 -51.93 -0.42 1.06 16 43 H 0.13 1.04 7.05 -52.48 -0.37 0.66 16 44 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 47 H 0.13 1.60 7.65 -52.49 -0.40 1.20 16 LS Contribution 398.32 15.07 6.00 6.00 Total: -1.00 -35.27 398.32 -11.60 -46.87 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.45 Total: 6.82 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -6.31 Total: -11.69 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.43 Total: -37.12 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -1.25 Total: -27.43 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.27 -11.60 -46.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004166005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.692 kcal (2) G-P(sol) polarization free energy of solvation -35.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds