Wall clock time and date at job start Tue Mar 31 2020 06:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99670 * 2 1 4 4 H 1.48506 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47324 * 299.99534 * 3 2 1 6 6 H 1.48497 * 109.47244 * 60.00265 * 3 2 1 7 7 C 1.37866 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00323 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47487 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.39528 * 123.87701 * 90.00063 * 11 10 9 13 13 C 1.39366 * 130.82649 * 0.05673 * 12 11 10 14 14 C 1.37944 * 120.12925 * 179.97438 * 13 12 11 15 15 C 1.38302 * 120.37716 * 0.03081 * 14 13 12 16 16 C 1.38394 * 119.82702 * 359.96219 * 15 14 13 17 17 C 1.37686 * 119.91008 * 0.02562 * 16 15 14 18 18 C 1.51133 * 132.84462 * 180.02562 * 17 16 15 19 19 O 1.42901 * 110.51093 * 61.19287 * 18 17 16 20 20 C 1.52993 * 110.51101 * 298.62031 * 18 17 16 21 21 C 1.50708 * 109.47357 * 185.00123 * 20 18 17 22 22 O 1.21249 * 119.99757 * 359.97438 * 21 20 18 23 23 C 1.47167 * 119.99900 * 180.02562 * 21 20 18 24 24 C 1.39853 * 120.16939 * 179.97438 * 23 21 20 25 25 C 1.37885 * 119.82463 * 180.02562 * 24 23 21 26 26 C 1.38401 * 120.17016 * 0.02562 * 25 24 23 27 27 C 1.38398 * 120.35036 * 0.02562 * 26 25 24 28 28 C 1.37882 * 120.17329 * 0.02562 * 27 26 25 29 29 C 1.34371 * 123.87420 * 270.02766 * 11 10 9 30 30 O 1.21288 * 126.44360 * 359.95046 * 29 11 10 31 31 H 0.97009 * 120.00159 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47316 * 59.99244 * 9 7 2 33 33 H 1.09001 * 109.47011 * 299.99798 * 9 7 2 34 34 H 1.08999 * 109.47034 * 59.99862 * 10 9 7 35 35 H 1.09001 * 109.46954 * 299.99985 * 10 9 7 36 36 H 1.07994 * 119.93581 * 359.97438 * 13 12 11 37 37 H 1.08000 * 119.80966 * 180.02562 * 14 13 12 38 38 H 1.07998 * 120.08595 * 179.97438 * 15 14 13 39 39 H 1.07998 * 120.04635 * 180.02562 * 16 15 14 40 40 H 0.96705 * 114.00299 * 178.09661 * 19 18 17 41 41 H 1.09005 * 109.47170 * 65.00090 * 20 18 17 42 42 H 1.09001 * 109.47472 * 304.99869 * 20 18 17 43 43 H 1.07999 * 120.08526 * 0.30134 * 24 23 21 44 44 H 1.07997 * 119.90997 * 180.02562 * 25 24 23 45 45 H 1.08005 * 119.82278 * 180.02562 * 26 25 24 46 46 H 1.08004 * 119.91286 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.08521 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 1.1235 -5.6047 -1.1569 13 6 1.3078 -5.2872 -2.5014 14 6 0.8237 -6.1261 -3.4836 15 6 0.1522 -7.2864 -3.1438 16 6 -0.0346 -7.6085 -1.8109 17 6 0.4479 -6.7730 -0.8286 18 6 0.4126 -6.8340 0.6811 19 8 1.0942 -7.9986 1.1513 20 6 -1.0321 -6.8202 1.1845 21 6 -1.0389 -6.7576 2.6903 22 8 0.0084 -6.7275 3.3005 23 6 -2.3167 -6.7342 3.4200 24 6 -2.3271 -6.6767 4.8173 25 6 -3.5284 -6.6556 5.4938 26 6 -4.7217 -6.6917 4.7936 27 6 -4.7197 -6.7497 3.4109 28 6 -3.5267 -6.7725 2.7199 29 6 1.1382 -5.5788 1.1171 30 8 1.3431 -5.2248 2.2589 31 1 -0.4851 0.8401 -0.0004 32 1 0.6246 -2.5570 -0.8896 33 1 0.6241 -2.5567 0.8903 34 1 2.8719 -3.6043 0.8905 35 1 2.8719 -3.6043 -0.8895 36 1 1.8306 -4.3827 -2.7747 37 1 0.9697 -5.8752 -4.5238 38 1 -0.2252 -7.9396 -3.9167 39 1 -0.5580 -8.5139 -1.5416 40 1 1.1274 -8.0728 2.1149 41 1 -1.5399 -7.7271 0.8562 42 1 -1.5488 -5.9487 0.7824 43 1 -1.3968 -6.6444 5.3648 44 1 -3.5381 -6.6108 6.5728 45 1 -5.6595 -6.6744 5.3292 46 1 -5.6551 -6.7780 2.8716 47 1 -3.5268 -6.8182 1.6409 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004166007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:39 Heat of formation + Delta-G solvation = -47.713164 kcal Electronic energy + Delta-G solvation = -32800.693510 eV Core-core repulsion = 28492.967136 eV Total energy + Delta-G solvation = -4307.726375 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.77406 -40.02892 -38.53001 -37.97411 -36.47571 -35.68380 -33.56127 -32.62481 -31.74666 -31.16992 -30.55856 -29.86919 -28.66419 -26.43520 -24.80230 -23.61771 -22.61164 -22.37118 -21.59442 -21.17184 -20.11725 -19.59126 -17.88892 -17.52592 -16.81497 -16.63192 -16.10405 -15.86016 -15.68290 -15.53565 -15.26065 -14.85513 -14.49429 -14.41160 -14.20248 -14.08096 -13.94638 -13.74855 -13.61025 -13.21734 -12.91812 -12.77904 -12.71848 -12.42136 -12.36074 -12.24107 -11.90798 -11.82371 -11.55885 -11.31665 -11.11763 -11.01573 -10.85776 -10.75804 -10.33487 -10.13028 -9.81470 -9.50725 -9.38525 -9.22205 -9.17429 -9.08876 -8.87931 -8.44565 -7.60633 -6.08933 -4.13154 0.51028 1.15417 1.20827 1.42976 2.30911 2.72466 3.11522 3.27082 3.34872 3.39058 3.60560 3.70254 3.88825 4.17485 4.22884 4.32452 4.40231 4.59807 4.70244 4.75191 4.81559 4.94414 5.05984 5.11104 5.16738 5.23191 5.27610 5.32016 5.36397 5.49066 5.57622 5.63229 5.67910 5.75805 5.86757 5.94596 6.09360 6.18738 6.21460 6.22246 6.29265 6.43602 6.56248 6.62025 6.65442 6.79553 6.95998 7.33186 7.33895 7.53939 7.56868 7.67707 7.87844 8.20036 8.32102 8.92590 9.51613 11.02458 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007075 B = 0.003547 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3956.810333 B = 7891.847976 C =10318.512006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.109 3.891 11 N -0.544 5.544 12 C 0.179 3.821 13 C -0.141 4.141 14 C -0.073 4.073 15 C -0.159 4.159 16 C -0.046 4.046 17 C -0.150 4.150 18 C 0.164 3.836 19 O -0.531 6.531 20 C -0.178 4.178 21 C 0.383 3.617 22 O -0.414 6.414 23 C -0.161 4.161 24 C -0.060 4.060 25 C -0.133 4.133 26 C -0.092 4.092 27 C -0.133 4.133 28 C -0.075 4.075 29 C 0.499 3.501 30 O -0.460 6.460 31 H 0.261 0.739 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.387 0.613 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.135 0.865 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.189 -19.234 0.041 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.010 4.010 11 N -0.266 5.266 12 C 0.082 3.918 13 C -0.162 4.162 14 C -0.092 4.092 15 C -0.178 4.178 16 C -0.065 4.065 17 C -0.154 4.154 18 C 0.119 3.881 19 O -0.340 6.340 20 C -0.216 4.216 21 C 0.259 3.741 22 O -0.287 6.287 23 C -0.161 4.161 24 C -0.078 4.078 25 C -0.151 4.151 26 C -0.110 4.110 27 C -0.151 4.151 28 C -0.093 4.093 29 C 0.284 3.716 30 O -0.331 6.331 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.239 0.761 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.153 0.847 44 H 0.146 0.854 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.489 -18.880 0.526 20.708 hybrid contribution 0.178 1.347 0.516 1.454 sum -8.311 -17.533 1.042 19.431 Atomic orbital electron populations 1.69983 1.06131 1.26721 1.50136 1.24988 0.94855 0.99359 0.94912 0.86477 0.80113 0.83431 0.77663 1.19592 1.20882 1.20898 1.21061 0.93105 0.90402 1.51653 0.92279 1.19406 0.94217 0.90837 0.97969 1.22168 0.95691 0.80669 1.02468 1.46298 1.52769 1.22983 1.04540 1.18295 0.93821 0.91335 0.88383 1.20508 1.04626 1.01900 0.89199 1.20910 0.95852 0.93559 0.98887 1.20961 1.02993 0.98428 0.95464 1.20180 0.97326 0.97579 0.91400 1.19356 1.06203 0.97503 0.92289 1.20127 0.90793 0.85880 0.91296 1.86549 1.78231 1.40504 1.28686 1.22586 0.97405 1.06573 0.95044 1.22359 0.88371 0.72776 0.90633 1.90614 1.33543 1.33648 1.70854 1.20463 0.94523 1.06500 0.94659 1.21471 0.98987 0.94188 0.93195 1.21169 0.92222 1.01372 1.00358 1.21425 0.98303 0.96802 0.94498 1.21145 0.98118 1.01365 0.94466 1.21496 0.91581 0.95923 1.00289 1.21079 0.79897 0.85709 0.84922 1.90830 1.53851 1.70008 1.18386 0.92893 0.96049 0.96114 0.90290 0.90721 0.84977 0.85302 0.85552 0.85680 0.76091 0.86312 0.86651 0.84734 0.85402 0.85635 0.85330 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.35 5.30 -27.88 -0.15 0.21 16 10 C 0.11 2.39 5.67 -4.04 -0.02 2.37 16 11 N -0.54 -10.87 2.73 -113.25 -0.31 -11.18 16 12 C 0.18 3.08 6.69 -83.69 -0.56 2.52 16 13 C -0.14 -2.11 9.74 -39.27 -0.38 -2.49 16 14 C -0.07 -0.86 10.02 -39.67 -0.40 -1.26 16 15 C -0.16 -1.70 10.07 -39.50 -0.40 -2.10 16 16 C -0.05 -0.55 10.04 -39.73 -0.40 -0.95 16 17 C -0.15 -2.26 5.35 -104.37 -0.56 -2.82 16 18 C 0.16 2.59 1.02 -92.37 -0.09 2.50 16 19 O -0.53 -8.20 13.07 -51.45 -0.67 -8.88 16 20 C -0.18 -2.28 3.68 -27.88 -0.10 -2.38 16 21 C 0.38 5.46 6.60 -30.68 -0.20 5.25 16 22 O -0.41 -7.12 11.24 -24.64 -0.28 -7.40 16 23 C -0.16 -1.99 5.87 -105.07 -0.62 -2.60 16 24 C -0.06 -0.72 9.60 -39.11 -0.38 -1.09 16 25 C -0.13 -1.28 10.03 -39.65 -0.40 -1.67 16 26 C -0.09 -0.78 10.04 -39.46 -0.40 -1.18 16 27 C -0.13 -1.15 10.03 -39.65 -0.40 -1.55 16 28 C -0.07 -0.75 9.47 -39.11 -0.37 -1.12 16 29 C 0.50 10.05 6.97 -10.83 -0.08 9.98 16 30 O -0.46 -10.65 14.56 -18.87 -0.27 -10.93 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.79 7.95 -51.93 -0.41 1.37 16 35 H 0.07 1.48 7.61 -51.93 -0.40 1.08 16 36 H 0.13 1.97 7.70 -52.49 -0.40 1.56 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.39 5.62 6.85 45.56 0.31 5.93 16 41 H 0.12 1.10 8.09 -51.93 -0.42 0.68 16 42 H 0.12 1.47 8.09 -51.93 -0.42 1.05 16 43 H 0.13 1.63 7.65 -52.49 -0.40 1.23 16 44 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 45 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 46 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 47 H 0.13 1.03 7.05 -52.48 -0.37 0.66 16 LS Contribution 398.16 15.07 6.00 6.00 Total: -1.00 -35.39 398.16 -11.56 -46.95 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.44 Total: 6.68 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -6.31 Total: -11.83 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.43 Total: -37.18 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.22 Total: -27.20 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.39 -11.56 -46.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004166007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.768 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds