Wall clock time and date at job start Tue Mar 31 2020 04:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.47209 * 2 1 4 4 C 1.46504 * 119.99894 * 270.00461 * 3 2 1 5 5 C 1.53001 * 109.46590 * 269.99692 * 4 3 2 6 6 C 1.34773 * 119.99712 * 89.99579 * 3 2 1 7 7 O 1.21275 * 119.99657 * 180.02562 * 6 3 2 8 8 C 1.50698 * 120.00288 * 0.02562 * 6 3 2 9 9 N 1.46497 * 109.47017 * 179.97438 * 8 6 3 10 10 C 1.36835 * 125.06450 * 265.02050 * 9 8 6 11 11 C 1.34235 * 109.92997 * 179.74136 * 10 9 8 12 12 S 1.76202 * 126.50034 * 180.02562 * 11 10 9 13 13 O 1.42095 * 106.40364 * 228.56063 * 12 11 10 14 14 O 1.42104 * 106.40041 * 1.47995 * 12 11 10 15 15 C 1.76196 * 107.21999 * 115.02132 * 12 11 10 16 16 H 1.08000 * 119.99955 * 359.97438 * 15 12 11 17 17 C 1.37882 * 119.99939 * 180.02562 * 15 12 11 18 18 N 1.31508 * 120.00012 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99886 * 179.97438 * 17 15 12 20 20 H 1.48508 * 109.46995 * 89.99675 * 19 17 15 21 21 H 1.48494 * 109.47244 * 209.99614 * 19 17 15 22 22 H 1.48497 * 109.47360 * 330.00150 * 19 17 15 23 23 C 1.46490 * 106.99864 * 359.97438 * 11 10 9 24 24 C 1.39626 * 134.03412 * 180.02562 * 23 11 10 25 25 C 1.36624 * 119.76783 * 179.97438 * 24 23 11 26 26 C 1.38832 * 120.52378 * 0.02562 * 25 24 23 27 27 C 1.37740 * 120.66938 * 359.97438 * 26 25 24 28 28 C 1.37681 * 125.06400 * 84.72011 * 9 8 6 29 29 H 1.09005 * 109.46636 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47234 * 299.99938 * 1 2 3 31 31 H 1.09003 * 109.47066 * 59.99811 * 1 2 3 32 32 H 1.09004 * 109.47364 * 240.00573 * 2 1 3 33 33 H 1.08996 * 109.47391 * 120.00036 * 2 1 3 34 34 H 1.09002 * 109.47286 * 29.99268 * 4 3 2 35 35 H 1.08998 * 109.46593 * 149.99820 * 4 3 2 36 36 H 1.08995 * 109.47041 * 60.00157 * 5 4 3 37 37 H 1.08998 * 109.46512 * 180.02562 * 5 4 3 38 38 H 1.09002 * 109.46960 * 299.99776 * 5 4 3 39 39 H 1.09000 * 109.47245 * 59.99552 * 8 6 3 40 40 H 1.09000 * 109.47038 * 299.99300 * 8 6 3 41 41 H 1.07997 * 125.02938 * 359.75665 * 10 9 8 42 42 H 0.97000 * 119.99903 * 179.97438 * 18 17 15 43 43 H 1.08006 * 120.12056 * 359.97438 * 24 23 11 44 44 H 1.07998 * 119.73571 * 180.02562 * 25 24 23 45 45 H 1.08006 * 119.66593 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.11281 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.7075 1.8315 -1.7104 6 6 2.2429 2.0166 1.1672 7 8 2.6467 3.1601 1.1672 8 6 1.9922 1.3060 2.4723 9 7 2.3099 2.2034 3.5858 10 6 3.5078 2.2434 4.2460 11 6 3.4693 3.1792 5.2076 12 16 4.7730 3.5963 6.3170 13 8 4.2013 3.6190 7.6177 14 8 5.8765 2.7721 5.9674 15 6 5.2550 5.2523 5.9566 16 1 4.7577 5.8003 5.1699 17 6 6.2677 5.8481 6.6781 18 7 6.8736 5.1806 7.6356 19 14 6.7791 7.6035 6.2954 20 1 5.9765 8.5436 7.1186 21 1 8.2203 7.7785 6.6078 22 1 6.5470 7.8842 4.8558 23 6 2.1381 3.7889 5.1588 24 6 1.5051 4.7972 5.8883 25 6 0.2186 5.1459 5.5883 26 6 -0.4650 4.5051 4.5638 27 6 0.1403 3.5078 3.8315 28 6 1.4498 3.1364 4.1200 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1383 36 1 3.8744 0.7623 -1.8407 37 1 3.8892 2.3457 -2.6542 38 1 4.3883 2.2156 -0.9508 39 1 2.6227 0.4187 2.5299 40 1 0.9443 1.0116 2.5302 41 1 4.3582 1.6152 4.0259 42 1 7.5863 5.5997 8.1429 43 1 2.0306 5.2998 6.6869 44 1 -0.2703 5.9261 6.1526 45 1 -1.4817 4.7915 4.3387 46 1 -0.3997 3.0156 3.0362 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004272489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:58 Heat of formation + Delta-G solvation = -54.515071 kcal Electronic energy + Delta-G solvation = -31137.017310 eV Core-core repulsion = 26926.325501 eV Total energy + Delta-G solvation = -4210.691809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.129 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.29656 -39.98305 -36.89854 -36.40793 -34.96683 -33.77545 -33.31409 -32.94587 -32.22088 -30.45517 -29.71655 -28.64920 -27.05569 -25.98336 -24.06363 -23.51389 -22.40191 -21.47637 -20.74087 -19.29059 -18.40349 -17.72731 -17.54681 -16.70133 -16.35676 -16.12626 -15.72023 -15.20977 -15.05216 -14.71729 -14.44922 -14.21087 -14.15628 -13.90382 -13.75129 -13.58960 -13.45602 -13.35132 -13.18762 -13.03231 -12.51491 -12.42783 -12.28523 -12.09168 -11.89399 -11.64830 -11.35839 -11.34797 -11.33431 -11.11429 -11.07407 -10.71935 -10.49801 -10.17250 -10.09099 -10.02209 -9.57449 -9.38948 -9.12855 -9.11287 -8.63574 -7.86418 -7.54600 -6.58682 -5.18294 1.40980 1.90303 2.22278 2.28028 2.49695 2.78713 2.98264 3.16839 3.22870 3.32444 4.02126 4.19369 4.27862 4.33746 4.43076 4.61890 4.69986 4.75102 4.75694 4.82412 4.86023 4.98259 5.07354 5.08319 5.17418 5.23937 5.27372 5.39825 5.42222 5.58715 5.61511 5.64605 5.68229 5.86979 5.90054 5.95396 6.03286 6.14692 6.16080 6.36607 6.69658 6.90762 6.93552 6.95898 7.05541 7.16608 7.41996 7.44088 7.49785 7.85380 8.13092 9.00705 10.35735 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.003308 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.412470 B = 8461.378129 C = 9350.486823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 N -0.615 5.615 4 C 0.112 3.888 5 C -0.169 4.169 6 C 0.491 3.509 7 O -0.504 6.504 8 C 0.091 3.909 9 N -0.470 5.470 10 C 0.166 3.834 11 C -0.703 4.703 12 S 2.631 3.369 13 O -0.985 6.985 14 O -0.996 6.996 15 C -0.997 4.997 16 H 0.104 0.896 17 C 0.133 3.867 18 N -0.846 5.846 19 Si 0.919 3.081 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.262 1.262 23 C -0.034 4.034 24 C -0.064 4.064 25 C -0.145 4.145 26 C -0.106 4.106 27 C -0.129 4.129 28 C 0.097 3.903 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.184 0.816 42 H 0.290 0.710 43 H 0.138 0.862 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.357 -10.448 -17.296 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.023 4.023 3 N -0.351 5.351 4 C -0.010 4.010 5 C -0.227 4.227 6 C 0.277 3.723 7 O -0.377 6.377 8 C -0.036 4.036 9 N -0.153 5.153 10 C 0.038 3.962 11 C -0.791 4.791 12 S 2.811 3.189 13 O -0.982 6.982 14 O -0.993 6.993 15 C -1.131 5.131 16 H 0.123 0.877 17 C -0.084 4.084 18 N -0.476 5.476 19 Si 0.743 3.257 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.186 1.186 23 C -0.038 4.038 24 C -0.083 4.083 25 C -0.164 4.164 26 C -0.125 4.125 27 C -0.150 4.150 28 C -0.006 4.006 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.201 0.799 42 H 0.100 0.900 43 H 0.156 0.844 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.805 -10.644 -16.819 24.223 hybrid contribution -0.101 1.094 -1.119 1.568 sum -13.906 -9.550 -17.938 24.624 Atomic orbital electron populations 1.22247 0.95553 1.02663 1.02789 1.21647 0.94667 0.82256 1.03716 1.48073 1.66758 1.14426 1.05883 1.21424 0.96704 0.98758 0.84121 1.22133 0.96885 1.01750 1.01915 1.21055 0.78318 0.87399 0.85543 1.90831 1.43062 1.17138 1.86684 1.21677 1.04717 0.93025 0.84143 1.43648 1.12093 1.31938 1.27655 1.21720 0.87268 0.96956 0.90270 1.32772 1.15530 1.10173 1.20623 1.00108 0.70699 0.76280 0.71766 1.93331 1.79057 1.88947 1.36895 1.93311 1.50292 1.71181 1.84486 1.30181 1.30261 1.22340 1.30339 0.87732 1.24739 0.92342 0.99979 0.91326 1.69904 1.21357 1.38430 1.17910 0.86180 0.78034 0.81496 0.79998 1.19093 1.20009 1.18580 1.18428 0.91802 0.97152 0.96463 1.20630 0.94460 0.94771 0.98400 1.20610 0.94860 1.01648 0.99285 1.20708 0.99366 0.96193 0.96245 1.19811 0.91886 1.01072 1.02221 1.18239 0.92579 0.93234 0.96580 0.91049 0.92348 0.92042 0.89778 0.90187 0.90575 0.89798 0.92606 0.91494 0.91928 0.86088 0.86687 0.79937 0.89975 0.84388 0.85891 0.86127 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.24 37.16 0.38 -0.35 16 2 C 0.10 0.48 5.93 -4.04 -0.02 0.46 16 3 N -0.62 -5.32 2.47 -173.68 -0.43 -5.75 16 4 C 0.11 0.92 6.13 -4.04 -0.02 0.90 16 5 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 6 C 0.49 6.18 7.74 -10.99 -0.09 6.10 16 7 O -0.50 -9.09 15.99 5.56 0.09 -9.00 16 8 C 0.09 0.99 5.03 -5.20 -0.03 0.97 16 9 N -0.47 -7.85 2.27 -115.71 -0.26 -8.11 16 10 C 0.17 3.23 10.92 -16.73 -0.18 3.04 16 11 C -0.70 -16.37 6.21 -37.67 -0.23 -16.61 16 12 S 2.63 73.71 4.82 -107.50 -0.52 73.19 16 13 O -0.99 -29.79 17.90 -57.17 -1.02 -30.81 16 14 O -1.00 -29.48 17.64 -57.17 -1.01 -30.49 16 15 C -1.00 -28.92 9.58 30.60 0.29 -28.63 16 16 H 0.10 2.88 7.81 -52.49 -0.41 2.47 16 17 C 0.13 3.84 5.46 -17.82 -0.10 3.74 16 18 N -0.85 -25.36 13.19 55.43 0.73 -24.62 16 19 Si 0.92 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 22 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 23 C -0.03 -0.74 6.37 -105.14 -0.67 -1.41 16 24 C -0.06 -1.30 10.05 -39.65 -0.40 -1.70 16 25 C -0.15 -2.37 9.97 -39.94 -0.40 -2.76 16 26 C -0.11 -1.55 10.01 -39.54 -0.40 -1.94 16 27 C -0.13 -2.00 10.00 -39.43 -0.39 -2.40 16 28 C 0.10 1.80 6.79 -83.99 -0.57 1.23 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.29 7.22 -51.93 -0.38 -0.08 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 33 H 0.08 0.29 6.44 -51.93 -0.33 -0.04 16 34 H 0.08 0.42 8.07 -51.93 -0.42 0.01 16 35 H 0.08 0.88 7.42 -51.93 -0.39 0.50 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.12 0.92 7.38 -51.93 -0.38 0.54 16 40 H 0.12 0.93 7.19 -51.93 -0.37 0.55 16 41 H 0.18 3.04 8.06 -52.49 -0.42 2.61 16 42 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.14 2.88 8.06 -52.48 -0.42 2.46 16 44 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 46 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 404.75 15.07 6.10 6.10 Total: -1.00 -40.76 404.75 -10.25 -51.01 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.46 Total: 2.44 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: -2.45 Total: -40.34 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.04 Total: -38.49 kcal Atomic # 8 Polarization: -68.36 SS G_CDS: -1.94 Total: -70.30 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 73.71 SS G_CDS: -0.52 Total: 73.19 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -40.76 -10.25 -51.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004272489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.500 kcal (2) G-P(sol) polarization free energy of solvation -40.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds