Wall clock time and date at job start Tue Mar 31 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46505 * 109.47062 * 2 1 4 4 C 1.32255 * 120.24088 * 89.99931 * 3 2 1 5 5 O 1.21720 * 122.52233 * 359.97438 * 4 3 2 6 6 C 1.46773 * 114.94835 * 180.02562 * 4 3 2 7 7 C 1.35821 * 127.96600 * 180.02562 * 6 4 3 8 8 C 1.46764 * 120.00304 * 8.68666 * 7 6 4 9 9 C 1.40122 * 120.08833 * 219.15441 * 8 7 6 10 10 C 1.37629 * 119.99074 * 179.70326 * 9 8 7 11 11 C 1.39072 * 120.16824 * 0.24969 * 10 9 8 12 12 O 1.35612 * 119.91286 * 180.02562 * 11 10 9 13 13 C 1.34758 * 116.99905 * 353.92881 * 12 11 10 14 14 H 1.08002 * 119.99848 * 354.41943 * 13 12 11 15 15 C 1.38682 * 120.00405 * 174.41367 * 13 12 11 16 16 N 1.31539 * 119.99476 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00282 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47197 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46757 * 120.00653 * 17 15 13 20 20 H 1.48501 * 109.47236 * 240.00633 * 17 15 13 21 21 C 1.39641 * 120.17985 * 0.02562 * 11 10 9 22 22 O 1.35944 * 120.00271 * 179.97438 * 21 11 10 23 23 C 1.42898 * 117.00520 * 180.02562 * 22 21 11 24 24 C 1.38061 * 120.00412 * 0.02562 * 21 11 10 25 25 S 1.77476 * 104.06297 * 0.26132 * 6 4 3 26 26 C 1.33790 * 120.23931 * 270.02550 * 3 2 1 27 27 S 1.71206 * 126.55289 * 359.97144 * 26 3 2 28 28 H 1.09000 * 109.46973 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46949 * 300.00058 * 1 2 3 30 30 H 1.08997 * 109.46880 * 59.99827 * 1 2 3 31 31 H 1.08994 * 109.46949 * 239.99942 * 2 1 3 32 32 H 1.08990 * 109.46865 * 119.99795 * 2 1 3 33 33 H 1.07997 * 119.99715 * 188.68454 * 7 6 4 34 34 H 1.07997 * 120.00371 * 359.97134 * 9 8 7 35 35 H 1.07994 * 119.91375 * 180.27337 * 10 9 8 36 36 H 0.96997 * 120.00031 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.46720 * 60.00409 * 23 22 21 38 38 H 1.09003 * 109.47585 * 180.02562 * 23 22 21 39 39 H 1.08998 * 109.47253 * 300.00337 * 23 22 21 40 40 H 1.07997 * 120.08024 * 179.97438 * 24 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2404 2.0093 1.1426 5 8 2.0543 1.4842 2.2248 6 6 2.7270 3.3874 1.0072 7 6 3.0376 4.2648 1.9963 8 6 3.0822 3.8120 3.3917 9 6 2.5937 4.6367 4.4138 10 6 2.6310 4.2076 5.7209 11 6 3.1574 2.9584 6.0317 12 8 3.1911 2.5405 7.3214 13 6 2.8170 3.4296 8.2625 14 1 2.5955 4.4494 7.9843 15 6 2.7163 3.0351 9.5882 16 7 2.9864 1.7931 9.9270 17 14 2.1985 4.2677 10.8928 18 1 1.9540 5.5874 10.2576 19 1 0.9534 3.7974 11.5515 20 1 3.2760 4.3978 11.9064 21 6 3.6514 2.1332 5.0193 22 8 4.1656 0.9130 5.3272 23 6 4.6535 0.1218 4.2419 24 6 3.6185 2.5568 3.7057 25 16 2.8093 3.6453 -0.7468 26 6 2.2425 2.0167 -1.1559 27 16 2.0176 1.3806 -2.7294 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8899 33 1 3.2517 5.2957 1.7560 34 1 2.1841 5.6071 4.1754 35 1 2.2501 4.8424 6.5072 36 1 2.9164 1.5172 10.8543 37 1 5.4552 0.6576 3.7334 38 1 5.0347 -0.8249 4.6249 39 1 3.8427 -0.0709 3.5394 40 1 4.0006 1.9197 2.9218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004578524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:42 Heat of formation + Delta-G solvation = -2.347388 kcal Electronic energy + Delta-G solvation = -27849.406153 eV Core-core repulsion = 23850.177619 eV Total energy + Delta-G solvation = -3999.228534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 365.059 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.68688 -39.83596 -37.87380 -37.44574 -36.47392 -33.76020 -32.71485 -32.04729 -29.73715 -28.93338 -27.18464 -26.88497 -25.96271 -25.21246 -22.79460 -21.77198 -21.38274 -19.96114 -19.06385 -18.38650 -18.17879 -17.17313 -16.59793 -16.50401 -15.97774 -15.56057 -15.34628 -15.07566 -14.86230 -14.61683 -14.22692 -14.09653 -13.79781 -13.76653 -13.47841 -13.27647 -12.67571 -12.51099 -12.31666 -12.20004 -12.01799 -11.87538 -11.69132 -11.51558 -11.37866 -11.33403 -11.18934 -10.98930 -10.90743 -10.64713 -10.42781 -10.13867 -9.83503 -9.24179 -9.06911 -8.24185 -8.05914 -7.88559 -7.08605 -6.84305 -4.29114 -0.55322 0.49110 0.68636 1.33951 1.54667 2.06695 2.11135 2.26736 2.67564 2.93363 2.94504 3.00623 3.66509 3.86938 3.88857 4.23070 4.66171 4.73301 4.75663 4.79494 4.87608 4.92873 5.14713 5.29752 5.33708 5.44109 5.48322 5.52773 5.58382 5.61408 5.64460 5.79046 5.87508 6.03602 6.11292 6.29850 6.33337 6.63791 6.79931 6.88719 6.99300 7.27190 7.32745 7.57147 7.98995 8.57789 9.26154 10.30336 Molecular weight = 365.06amu Principal moments of inertia in cm(-1) A = 0.018626 B = 0.002481 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.905094 B =11282.002241 C =11872.924995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.084 3.916 3 N -0.507 5.507 4 C 0.533 3.467 5 O -0.441 6.441 6 C -0.327 4.327 7 C 0.143 3.857 8 C -0.195 4.195 9 C -0.036 4.036 10 C -0.233 4.233 11 C 0.157 3.843 12 O -0.134 6.134 13 C -0.382 4.382 14 H 0.103 0.897 15 C 0.040 3.960 16 N -0.832 5.832 17 Si 0.949 3.051 18 H -0.262 1.262 19 H -0.272 1.272 20 H -0.271 1.271 21 C 0.048 3.952 22 O -0.302 6.302 23 C 0.032 3.968 24 C -0.084 4.084 25 S 0.101 5.899 26 C 0.282 3.718 27 S -0.432 6.432 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.140 0.860 36 H 0.278 0.722 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 2.792 -14.428 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.039 4.039 3 N -0.226 5.226 4 C 0.321 3.679 5 O -0.314 6.314 6 C -0.444 4.444 7 C 0.117 3.883 8 C -0.199 4.199 9 C -0.055 4.055 10 C -0.252 4.252 11 C 0.098 3.902 12 O -0.033 6.033 13 C -0.457 4.457 14 H 0.120 0.880 15 C -0.168 4.168 16 N -0.462 5.462 17 Si 0.772 3.228 18 H -0.186 1.186 19 H -0.197 1.197 20 H -0.197 1.197 21 C 0.003 3.997 22 O -0.216 6.216 23 C -0.063 4.063 24 C -0.104 4.104 25 S 0.342 5.658 26 C -0.073 4.073 27 S -0.299 6.299 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.161 0.839 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.218 2.536 -14.927 15.143 hybrid contribution -0.561 -0.200 1.821 1.916 sum -0.780 2.336 -13.107 13.336 Atomic orbital electron populations 1.22037 0.93365 1.03777 1.03070 1.22231 0.96771 0.78829 1.06041 1.45493 1.54795 1.16614 1.05659 1.18090 0.79387 0.86768 0.83629 1.91023 1.47447 1.68351 1.24627 1.23511 1.24534 0.99272 0.97127 1.21967 0.79500 0.96385 0.90456 1.17916 1.14310 0.97252 0.90443 1.20812 0.95906 0.97357 0.91467 1.20763 1.09944 0.97534 0.96991 1.18943 0.94610 0.91908 0.84695 1.83998 1.69341 1.39505 1.10460 1.21725 1.46084 0.92076 0.85826 0.88016 1.25535 0.96175 0.97523 0.97606 1.70060 1.40382 1.16209 1.19554 0.85517 0.78752 0.79162 0.79345 1.18597 1.19685 1.19659 1.17932 1.03483 0.86854 0.91428 1.86202 1.75797 1.26028 1.33603 1.22890 0.98020 0.94951 0.90475 1.20711 1.01180 0.95025 0.93482 1.85822 1.71502 1.09611 0.98850 1.28325 0.86566 0.97137 0.95240 1.92908 1.60698 1.74482 1.01792 0.89989 0.91887 0.91446 0.87055 0.87985 0.83879 0.86415 0.84288 0.91186 0.93871 0.89011 0.93248 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.24 37.16 0.38 -1.27 16 2 C 0.08 0.91 5.83 -4.04 -0.02 0.89 16 3 N -0.51 -6.40 2.48 -117.63 -0.29 -6.69 16 4 C 0.53 7.55 6.97 -13.92 -0.10 7.46 16 5 O -0.44 -7.40 12.60 5.17 0.07 -7.33 16 6 C -0.33 -4.11 6.31 -37.00 -0.23 -4.34 16 7 C 0.14 1.71 9.86 -37.00 -0.36 1.34 16 8 C -0.20 -3.05 5.31 -105.06 -0.56 -3.61 16 9 C -0.04 -0.57 9.78 -39.10 -0.38 -0.96 16 10 C -0.23 -4.48 9.10 -39.49 -0.36 -4.84 16 11 C 0.16 3.59 6.67 -38.75 -0.26 3.33 16 12 O -0.13 -3.60 9.52 -13.94 -0.13 -3.74 16 13 C -0.38 -9.69 9.43 30.90 0.29 -9.40 16 14 H 0.10 2.31 5.29 -52.49 -0.28 2.03 16 15 C 0.04 1.01 5.49 -17.51 -0.10 0.91 16 16 N -0.83 -22.57 13.67 55.48 0.76 -21.81 16 17 Si 0.95 18.42 29.55 -169.99 -5.02 13.40 16 18 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 C 0.05 1.01 6.70 -39.12 -0.26 0.75 16 22 O -0.30 -6.45 10.28 -34.18 -0.35 -6.80 16 23 C 0.03 0.50 9.81 101.05 0.99 1.49 16 24 C -0.08 -1.49 5.93 -38.96 -0.23 -1.72 16 25 S 0.10 1.12 23.18 -107.50 -2.49 -1.38 16 26 C 0.28 3.57 7.58 53.62 0.41 3.97 16 27 S -0.43 -6.03 29.73 -107.50 -3.20 -9.22 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.11 1.12 7.08 -51.93 -0.37 0.75 16 32 H 0.10 1.09 7.50 -51.93 -0.39 0.70 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.14 2.58 5.70 -52.49 -0.30 2.28 16 36 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.74 7.62 -51.93 -0.40 0.35 16 40 H 0.12 1.96 4.64 -52.49 -0.24 1.72 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -30.19 369.81 -9.93 -40.12 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.04 Total: 3.87 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.80 Total: -5.99 kcal Atomic # 7 Polarization: -28.96 SS G_CDS: 0.47 Total: -28.50 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.42 Total: -17.87 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.40 kcal Atomic # 16 Polarization: -4.91 SS G_CDS: -5.69 Total: -10.60 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.19 -9.93 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004578524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.770 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds