Wall clock time and date at job start Tue Mar 31 2020 07:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31534 * 1 3 3 Si 1.86791 * 120.00188 * 2 1 4 4 H 1.48501 * 109.47621 * 269.99983 * 3 2 1 5 5 H 1.48493 * 109.47436 * 30.00358 * 3 2 1 6 6 H 1.48502 * 109.46994 * 150.00033 * 3 2 1 7 7 C 1.38675 * 119.99332 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99743 * 179.97438 * 7 2 1 9 9 O 1.34773 * 120.00366 * 0.02562 * 7 2 1 10 10 C 1.35525 * 117.00262 * 174.93705 * 9 7 2 11 11 C 1.38745 * 120.17672 * 5.57961 * 10 9 7 12 12 C 1.38082 * 120.10372 * 179.97438 * 11 10 9 13 13 C 1.38634 * 120.47210 * 0.04192 * 12 11 10 14 14 C 1.37742 * 120.35920 * 359.67425 * 13 12 11 15 15 C 1.39998 * 119.88213 * 0.58235 * 14 13 12 16 16 C 1.46697 * 120.23078 * 179.71401 * 15 14 13 17 17 C 1.35844 * 119.99825 * 45.24326 * 16 15 14 18 18 S 1.77412 * 127.73750 * 188.32036 * 17 16 15 19 19 C 1.77203 * 94.75357 * 180.21309 * 18 17 16 20 20 N 1.31430 * 126.64912 * 179.84739 * 19 18 17 21 21 C 1.36823 * 119.99828 * 179.97438 * 20 19 18 22 22 C 1.39682 * 120.15595 * 314.72914 * 21 20 19 23 23 C 1.37937 * 119.84103 * 179.71779 * 22 21 20 24 24 C 1.38376 * 120.15091 * 0.57686 * 23 22 21 25 25 C 1.38381 * 120.31679 * 359.67777 * 24 23 22 26 26 C 1.37920 * 120.15931 * 0.04081 * 25 24 23 27 27 N 1.36760 * 106.70109 * 359.81589 * 19 18 17 28 28 C 1.32251 * 118.73159 * 359.97438 * 27 19 18 29 29 O 1.21711 * 122.35472 * 179.97438 * 28 27 19 30 30 H 0.97003 * 119.99770 * 359.97438 * 1 2 3 31 31 H 1.08003 * 119.94824 * 359.97438 * 11 10 9 32 32 H 1.08002 * 119.76472 * 180.02562 * 12 11 10 33 33 H 1.08006 * 119.81936 * 179.97438 * 13 12 11 34 34 H 1.07997 * 120.06097 * 180.31608 * 14 13 12 35 35 H 1.08000 * 120.00417 * 225.23464 * 16 15 14 36 36 H 1.08000 * 120.08274 * 0.02562 * 22 21 20 37 37 H 1.07995 * 119.92649 * 180.27634 * 23 22 21 38 38 H 1.08002 * 119.84158 * 179.69470 * 24 23 22 39 39 H 1.08003 * 119.92103 * 180.02562 * 25 24 23 40 40 H 1.08002 * 120.08606 * 180.02562 * 26 25 24 41 41 H 0.97001 * 120.63239 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0086 -1.2010 -0.0005 8 1 3.0886 -1.2011 -0.0010 9 8 1.3346 -2.3682 -0.0016 10 6 2.0686 -3.5024 -0.1086 11 6 3.4546 -3.4402 -0.0945 12 6 4.2009 -4.5969 -0.2032 13 6 3.5757 -5.8279 -0.3279 14 6 2.2009 -5.9126 -0.3382 15 6 1.4296 -4.7489 -0.2344 16 6 -0.0350 -4.8296 -0.2509 17 6 -0.6720 -5.7680 0.4968 18 16 -2.3968 -6.1827 0.4797 19 6 -2.2590 -7.4356 1.7253 20 7 -3.2340 -8.1738 2.2069 21 6 -2.9724 -9.1074 3.1722 22 6 -1.8716 -9.9579 3.0460 23 6 -1.6106 -10.8929 4.0260 24 6 -2.4433 -10.9974 5.1262 25 6 -3.5387 -10.1617 5.2552 26 6 -3.8084 -9.2183 4.2859 27 7 -0.9412 -7.4861 2.0878 28 6 -0.0876 -6.6667 1.4971 29 8 1.0987 -6.6554 1.7690 30 1 -0.4850 0.8401 0.0004 31 1 3.9505 -2.4856 0.0015 32 1 5.2795 -4.5421 -0.1912 33 1 4.1698 -6.7259 -0.4125 34 1 1.7188 -6.8746 -0.4304 35 1 -0.6070 -4.1430 -0.8574 36 1 -1.2234 -9.8803 2.1856 37 1 -0.7573 -11.5481 3.9320 38 1 -2.2371 -11.7346 5.8881 39 1 -4.1841 -10.2486 6.1168 40 1 -4.6634 -8.5664 4.3880 41 1 -0.6384 -8.1115 2.7646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004694913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:55 Heat of formation + Delta-G solvation = 53.581418 kcal Electronic energy + Delta-G solvation = -28463.118108 eV Core-core repulsion = 24401.278062 eV Total energy + Delta-G solvation = -4061.840046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.082 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.02794 -39.58047 -39.12868 -37.12619 -36.50512 -34.37303 -33.54864 -32.50231 -31.21950 -29.76631 -29.39921 -28.88965 -25.58035 -24.96993 -24.60666 -22.83566 -22.05624 -21.70582 -21.35235 -19.28289 -18.34650 -18.15871 -18.05501 -16.94068 -16.74979 -15.98166 -15.63445 -15.39644 -15.19495 -14.92708 -14.69679 -14.45299 -14.29859 -13.95321 -13.73181 -13.68658 -13.61890 -13.36294 -12.82095 -12.50867 -12.45570 -12.06508 -11.87490 -11.74608 -11.46354 -11.29986 -11.12934 -10.99124 -10.89486 -10.73312 -10.63737 -10.49858 -9.97408 -9.67185 -9.52636 -9.25157 -9.03227 -8.66720 -8.20096 -7.62454 -7.16443 -6.67203 -4.23503 0.32703 0.79387 1.01820 1.10906 1.79801 1.87722 2.29571 2.32739 2.82593 3.02904 3.03309 3.08244 3.10472 3.56692 3.79740 4.26058 4.41666 4.43687 4.67375 4.68545 4.86838 4.89994 4.97817 5.13781 5.28061 5.30623 5.49620 5.53074 5.63010 5.77285 5.83434 5.90089 6.04407 6.08701 6.14278 6.17133 6.25414 6.29129 6.53025 6.62172 6.64935 6.67070 6.91119 7.08709 7.17979 7.23193 7.44637 7.63014 7.77031 7.83681 8.77674 9.41273 10.49199 Molecular weight = 366.08amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.002380 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.296830 B =11760.126793 C =12819.656683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.097 0.903 9 O -0.161 6.161 10 C 0.182 3.818 11 C -0.237 4.237 12 C -0.048 4.048 13 C -0.220 4.220 14 C 0.005 3.995 15 C -0.187 4.187 16 C 0.143 3.857 17 C -0.303 4.303 18 S 0.108 5.892 19 C 0.376 3.624 20 N -0.494 5.494 21 C 0.109 3.891 22 C -0.176 4.176 23 C -0.097 4.097 24 C -0.136 4.136 25 C -0.101 4.101 26 C -0.110 4.110 27 N -0.684 5.684 28 C 0.554 3.446 29 O -0.475 6.475 30 H 0.274 0.726 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 -15.501 3.852 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.468 4.468 8 H 0.114 0.886 9 O -0.062 6.062 10 C 0.126 3.874 11 C -0.256 4.256 12 C -0.067 4.067 13 C -0.239 4.239 14 C -0.013 4.013 15 C -0.191 4.191 16 C 0.116 3.884 17 C -0.418 4.418 18 S 0.350 5.650 19 C -0.003 4.003 20 N -0.220 5.220 21 C 0.005 3.995 22 C -0.198 4.198 23 C -0.116 4.116 24 C -0.155 4.155 25 C -0.119 4.119 26 C -0.131 4.131 27 N -0.338 5.338 28 C 0.342 3.658 29 O -0.347 6.347 30 H 0.084 0.916 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.166 0.834 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -4.715 -14.787 3.149 15.837 hybrid contribution 2.302 -0.202 1.441 2.724 sum -2.413 -14.989 4.590 15.860 Atomic orbital electron populations 1.70007 1.06038 1.28301 1.44033 1.25349 0.95916 0.99027 0.96019 0.85660 0.79013 0.79620 0.78928 1.19620 1.20063 1.19027 1.21430 0.92091 0.80386 1.52935 0.88585 1.83854 1.34866 1.11665 1.75832 1.19328 0.90194 0.86649 0.91256 1.21089 0.93323 0.99310 1.11905 1.20944 0.98720 0.92297 0.94718 1.20486 0.94168 0.97046 1.12187 1.20684 0.93383 0.95068 0.92209 1.17750 0.90602 0.91698 1.19058 1.21859 0.93600 0.86827 0.86081 1.23375 0.96255 1.11573 1.10615 1.85382 1.05716 1.34809 1.39135 1.25087 0.82013 0.97237 0.95985 1.69652 1.24958 1.11769 1.15597 1.18764 0.94192 0.94520 0.92022 1.21805 0.98134 0.99326 1.00509 1.21027 0.99231 0.97533 0.93762 1.21190 0.95725 1.00183 0.98427 1.21087 0.97298 0.94948 0.98596 1.21049 0.99965 0.99590 0.92459 1.44196 1.08332 1.39695 1.41580 1.17728 0.86252 0.79916 0.81903 1.90977 1.13407 1.66523 1.63798 0.91561 0.85064 0.87147 0.87304 0.87250 0.83448 0.86101 0.85771 0.85892 0.85508 0.85169 0.74277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.05 13.67 55.48 0.76 -22.29 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 19.14 29.55 -169.99 -5.02 14.12 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 7 C -0.39 -10.10 9.49 30.89 0.29 -9.81 16 8 H 0.10 2.28 5.21 -52.48 -0.27 2.01 16 9 O -0.16 -4.17 9.21 0.90 0.01 -4.16 16 10 C 0.18 4.10 6.67 -38.49 -0.26 3.84 16 11 C -0.24 -4.84 9.16 -39.45 -0.36 -5.20 16 12 C -0.05 -0.85 10.03 -39.49 -0.40 -1.24 16 13 C -0.22 -3.78 10.02 -39.62 -0.40 -4.17 16 14 C 0.01 0.09 7.02 -39.10 -0.27 -0.18 16 15 C -0.19 -3.72 5.13 -104.92 -0.54 -4.26 16 16 C 0.14 2.57 9.38 -37.03 -0.35 2.22 16 17 C -0.30 -5.02 6.31 -37.06 -0.23 -5.25 16 18 S 0.11 1.54 23.16 -107.50 -2.49 -0.95 16 19 C 0.38 5.37 8.05 -88.01 -0.71 4.66 16 20 N -0.49 -7.06 10.54 -10.52 -0.11 -7.17 16 21 C 0.11 1.41 6.02 -84.56 -0.51 0.90 16 22 C -0.18 -2.03 7.77 -39.15 -0.30 -2.33 16 23 C -0.10 -0.93 10.03 -39.64 -0.40 -1.33 16 24 C -0.14 -1.20 10.04 -39.48 -0.40 -1.60 16 25 C -0.10 -0.93 10.03 -39.65 -0.40 -1.32 16 26 C -0.11 -1.24 10.00 -39.15 -0.39 -1.64 16 27 N -0.68 -9.85 4.67 -13.47 -0.06 -9.91 16 28 C 0.55 9.33 7.46 -13.99 -0.10 9.22 16 29 O -0.47 -9.13 14.10 5.18 0.07 -9.06 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.13 2.63 5.64 -52.48 -0.30 2.33 16 32 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.11 1.82 7.05 -52.49 -0.37 1.45 16 35 H 0.15 2.53 8.06 -52.49 -0.42 2.10 16 36 H 0.12 1.36 6.92 -52.49 -0.36 1.00 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.42 5.46 6.17 -40.82 -0.25 5.21 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -29.32 370.02 -10.74 -40.06 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -3.65 Total: 10.27 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -5.82 Total: -16.49 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.58 Total: -39.37 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.49 Total: -0.95 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.32 -10.74 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004694913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.640 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds