Wall clock time and date at job start Tue Mar 31 2020 07:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31534 * 1 3 3 Si 1.86791 * 120.00188 * 2 1 4 4 H 1.48501 * 109.47621 * 269.99983 * 3 2 1 5 5 H 1.48493 * 109.47436 * 30.00358 * 3 2 1 6 6 H 1.48502 * 109.46994 * 150.00033 * 3 2 1 7 7 C 1.38675 * 119.99332 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99743 * 179.97438 * 7 2 1 9 9 O 1.34773 * 120.00366 * 0.02562 * 7 2 1 10 10 C 1.35525 * 117.00262 * 174.93705 * 9 7 2 11 11 C 1.38745 * 120.17672 * 5.57961 * 10 9 7 12 12 C 1.38082 * 120.10372 * 179.97438 * 11 10 9 13 13 C 1.38634 * 120.47210 * 0.04192 * 12 11 10 14 14 C 1.37742 * 120.35920 * 359.67425 * 13 12 11 15 15 C 1.39998 * 119.88213 * 0.58235 * 14 13 12 16 16 C 1.46697 * 120.23078 * 179.71401 * 15 14 13 17 17 C 1.35844 * 119.99825 * 45.24326 * 16 15 14 18 18 S 1.77412 * 127.73750 * 188.32036 * 17 16 15 19 19 C 1.77203 * 94.75357 * 180.21309 * 18 17 16 20 20 N 1.31430 * 126.64912 * 179.84739 * 19 18 17 21 21 C 1.36823 * 119.99828 * 179.97438 * 20 19 18 22 22 C 1.39682 * 120.15595 * 314.72914 * 21 20 19 23 23 C 1.37937 * 119.84103 * 179.71779 * 22 21 20 24 24 C 1.38376 * 120.15091 * 0.57686 * 23 22 21 25 25 C 1.38381 * 120.31679 * 359.67777 * 24 23 22 26 26 C 1.37920 * 120.15931 * 0.04081 * 25 24 23 27 27 N 1.36760 * 106.70109 * 359.81589 * 19 18 17 28 28 C 1.32251 * 118.73159 * 359.97438 * 27 19 18 29 29 O 1.21711 * 122.35472 * 179.97438 * 28 27 19 30 30 H 0.97003 * 119.99770 * 359.97438 * 1 2 3 31 31 H 1.08003 * 119.94824 * 359.97438 * 11 10 9 32 32 H 1.08002 * 119.76472 * 180.02562 * 12 11 10 33 33 H 1.08006 * 119.81936 * 179.97438 * 13 12 11 34 34 H 1.07997 * 120.06097 * 180.31608 * 14 13 12 35 35 H 1.08000 * 120.00417 * 225.23464 * 16 15 14 36 36 H 1.08000 * 120.08274 * 0.02562 * 22 21 20 37 37 H 1.07995 * 119.92649 * 180.27634 * 23 22 21 38 38 H 1.08002 * 119.84158 * 179.69470 * 24 23 22 39 39 H 1.08003 * 119.92103 * 180.02562 * 25 24 23 40 40 H 1.08002 * 120.08606 * 180.02562 * 26 25 24 41 41 H 0.97001 * 120.63239 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0086 -1.2010 -0.0005 8 1 3.0886 -1.2011 -0.0010 9 8 1.3346 -2.3682 -0.0016 10 6 2.0686 -3.5024 -0.1086 11 6 3.4546 -3.4402 -0.0945 12 6 4.2009 -4.5969 -0.2032 13 6 3.5757 -5.8279 -0.3279 14 6 2.2009 -5.9126 -0.3382 15 6 1.4296 -4.7489 -0.2344 16 6 -0.0350 -4.8296 -0.2509 17 6 -0.6720 -5.7680 0.4968 18 16 -2.3968 -6.1827 0.4797 19 6 -2.2590 -7.4356 1.7253 20 7 -3.2340 -8.1738 2.2069 21 6 -2.9724 -9.1074 3.1722 22 6 -1.8716 -9.9579 3.0460 23 6 -1.6106 -10.8929 4.0260 24 6 -2.4433 -10.9974 5.1262 25 6 -3.5387 -10.1617 5.2552 26 6 -3.8084 -9.2183 4.2859 27 7 -0.9412 -7.4861 2.0878 28 6 -0.0876 -6.6667 1.4971 29 8 1.0987 -6.6554 1.7690 30 1 -0.4850 0.8401 0.0004 31 1 3.9505 -2.4856 0.0015 32 1 5.2795 -4.5421 -0.1912 33 1 4.1698 -6.7259 -0.4125 34 1 1.7188 -6.8746 -0.4304 35 1 -0.6070 -4.1430 -0.8574 36 1 -1.2234 -9.8803 2.1856 37 1 -0.7573 -11.5481 3.9320 38 1 -2.2371 -11.7346 5.8881 39 1 -4.1841 -10.2486 6.1168 40 1 -4.6634 -8.5664 4.3880 41 1 -0.6384 -8.1115 2.7646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004694913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:54 Heat of formation + Delta-G solvation = 38.553865 kcal Electronic energy + Delta-G solvation = -28463.769752 eV Core-core repulsion = 24401.278062 eV Total energy + Delta-G solvation = -4062.491690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.082 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.27969 -40.90853 -40.36860 -38.42079 -37.95884 -35.55870 -34.92754 -34.30647 -32.02111 -30.98563 -30.61881 -30.37374 -27.38528 -26.33787 -25.66871 -23.77288 -23.38316 -22.99902 -22.63757 -20.56861 -19.89415 -19.59096 -19.25203 -18.43870 -17.71982 -17.23442 -16.76023 -16.75420 -16.54419 -16.25470 -16.12334 -15.82875 -15.45355 -15.33468 -15.20981 -15.04271 -14.60770 -14.43381 -14.33206 -13.85120 -13.62812 -13.56050 -13.19587 -12.86114 -12.74013 -12.57169 -12.45680 -12.37837 -12.24232 -12.14767 -11.93031 -11.81688 -11.35062 -11.16522 -10.82401 -10.78625 -10.05100 -9.88240 -9.43809 -9.09221 -8.51449 -8.48143 -6.15704 -0.89009 -0.38258 -0.15261 0.30171 0.53491 0.66465 0.75066 1.02005 1.37642 1.46115 1.53590 1.57542 1.77901 2.15874 2.72559 2.82071 2.95428 3.15321 3.35218 3.43342 3.84133 3.85472 3.91916 4.09032 4.18596 4.21993 4.41659 4.43297 4.46427 4.50982 4.63148 4.65378 4.76593 4.98826 5.00375 5.03221 5.14045 5.18648 5.26842 5.37137 5.41342 5.49298 5.60119 5.61761 5.72491 5.85322 5.97516 6.15402 6.26870 6.62454 6.94893 7.68420 8.71425 Molecular weight = 366.08amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.002380 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.296830 B =11760.126793 C =12819.656683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.013 4.013 3 Si 1.014 2.986 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.105 0.895 9 O -0.208 6.208 10 C 0.149 3.851 11 C -0.254 4.254 12 C -0.045 4.045 13 C -0.205 4.205 14 C -0.003 4.003 15 C -0.187 4.187 16 C 0.121 3.879 17 C -0.290 4.290 18 S 0.134 5.866 19 C 0.360 3.640 20 N -0.488 5.488 21 C 0.069 3.931 22 C -0.182 4.182 23 C -0.101 4.101 24 C -0.126 4.126 25 C -0.100 4.100 26 C -0.120 4.120 27 N -0.672 5.672 28 C 0.557 3.443 29 O -0.500 6.500 30 H 0.275 0.725 31 H 0.127 0.873 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.132 0.868 41 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -18.629 5.259 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.213 4.213 3 Si 0.834 3.166 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.491 4.491 8 H 0.122 0.878 9 O -0.113 6.113 10 C 0.096 3.904 11 C -0.273 4.273 12 C -0.063 4.063 13 C -0.223 4.223 14 C -0.021 4.021 15 C -0.190 4.190 16 C 0.094 3.906 17 C -0.406 4.406 18 S 0.375 5.625 19 C -0.020 4.020 20 N -0.212 5.212 21 C -0.034 4.034 22 C -0.203 4.203 23 C -0.120 4.120 24 C -0.145 4.145 25 C -0.118 4.118 26 C -0.140 4.140 27 N -0.326 5.326 28 C 0.344 3.656 29 O -0.374 6.374 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.143 0.857 35 H 0.164 0.836 36 H 0.136 0.864 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.174 0.826 40 H 0.150 0.850 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.791 -18.013 4.577 18.968 hybrid contribution 1.906 0.164 1.161 2.238 sum -1.885 -17.849 5.739 18.843 Atomic orbital electron populations 1.70138 1.07817 1.29028 1.47490 1.26484 0.96794 1.02433 0.95562 0.84640 0.77872 0.74831 0.79296 1.18687 1.19830 1.17839 1.21839 0.92698 0.81069 1.53459 0.87814 1.83839 1.35847 1.12367 1.79227 1.19872 0.91418 0.86758 0.92321 1.21257 0.92833 1.00491 1.12694 1.21340 1.00547 0.91260 0.93142 1.21001 0.94043 0.98263 1.09021 1.20959 0.94082 0.94970 0.92097 1.18089 0.91782 0.91532 1.17629 1.21811 0.93224 0.87895 0.87706 1.23523 0.98105 1.09897 1.09047 1.85343 1.03074 1.34793 1.39310 1.25083 0.82019 0.97899 0.96969 1.69648 1.25120 1.11196 1.15281 1.19010 0.96070 0.95393 0.92956 1.21866 0.97590 0.99766 1.01115 1.21371 1.00090 0.97165 0.93352 1.21645 0.94610 0.99828 0.98409 1.21460 0.97739 0.93917 0.98724 1.21257 0.99760 1.00328 0.92635 1.43964 1.08109 1.39187 1.41338 1.17744 0.86109 0.79953 0.81819 1.90950 1.14465 1.67422 1.64606 0.91628 0.85520 0.83339 0.83644 0.85688 0.83552 0.86403 0.83429 0.82724 0.82644 0.85006 0.73461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.37 13.67 21.62 0.30 -52.07 16 2 C -0.01 -0.71 5.49 84.84 0.47 -0.25 16 3 Si 1.01 40.67 29.55 68.60 2.03 42.70 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.41 -22.61 9.49 67.92 0.64 -21.97 16 8 H 0.10 5.19 5.21 -2.91 -0.02 5.18 16 9 O -0.21 -11.54 9.21 -19.69 -0.18 -11.72 16 10 C 0.15 7.02 6.67 22.98 0.15 7.17 16 11 C -0.25 -10.51 9.16 22.35 0.20 -10.30 16 12 C -0.04 -1.48 10.03 22.33 0.22 -1.26 16 13 C -0.20 -6.49 10.02 22.25 0.22 -6.27 16 14 C 0.00 -0.09 7.02 22.58 0.16 0.06 16 15 C -0.19 -7.63 5.13 -20.06 -0.10 -7.73 16 16 C 0.12 4.54 9.38 23.93 0.22 4.76 16 17 C -0.29 -9.76 6.31 23.90 0.15 -9.61 16 18 S 0.13 3.79 23.16 -56.49 -1.31 2.48 16 19 C 0.36 10.10 8.05 179.44 1.44 11.54 16 20 N -0.49 -13.59 10.54 -187.20 -1.97 -15.56 16 21 C 0.07 1.69 6.02 39.07 0.24 1.93 16 22 C -0.18 -3.87 7.77 22.55 0.18 -3.69 16 23 C -0.10 -1.63 10.03 22.23 0.22 -1.41 16 24 C -0.13 -1.73 10.04 22.34 0.22 -1.50 16 25 C -0.10 -1.51 10.03 22.23 0.22 -1.29 16 26 C -0.12 -2.48 10.00 22.55 0.23 -2.26 16 27 N -0.67 -18.91 4.67 -316.15 -1.48 -20.39 16 28 C 0.56 18.58 7.46 86.82 0.65 19.22 16 29 O -0.50 -18.99 14.10 -4.38 -0.06 -19.05 16 30 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.13 5.24 5.64 -2.91 -0.02 5.23 16 32 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 34 H 0.13 3.96 7.05 -2.91 -0.02 3.94 16 35 H 0.15 5.44 8.06 -2.91 -0.02 5.42 16 36 H 0.12 2.51 6.92 -2.91 -0.02 2.49 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 39 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 40 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.42 10.72 6.17 -92.71 -0.57 10.14 16 Total: -1.00 -67.96 370.02 3.61 -64.35 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.54 Total: 32.11 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 5.74 Total: -22.84 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -3.15 Total: -88.02 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.24 Total: -30.77 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.31 Total: 2.48 kcal Total: -67.96 3.61 -64.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004694913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.902 kcal (2) G-P(sol) polarization free energy of solvation -67.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds