Wall clock time and date at job start Tue Mar 31 2020 07:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86807 * 119.99748 * 2 1 4 4 H 1.48495 * 109.47162 * 270.00127 * 3 2 1 5 5 H 1.48507 * 109.46817 * 30.00173 * 3 2 1 6 6 H 1.48496 * 109.47139 * 149.99977 * 3 2 1 7 7 C 1.39729 * 120.00623 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00431 * 180.02562 * 7 2 1 9 9 C 1.39046 * 119.99638 * 359.97438 * 7 2 1 10 10 O 1.22154 * 120.00402 * 0.02562 * 9 7 2 11 11 N 1.34776 * 119.99947 * 179.97438 * 9 7 2 12 12 N 1.40105 * 120.00251 * 180.02562 * 11 9 7 13 13 C 1.31194 * 120.00450 * 180.02562 * 12 11 9 14 14 C 1.40730 * 120.00396 * 179.97438 * 13 12 11 15 15 C 1.38556 * 125.19620 * 179.97438 * 14 13 12 16 16 C 1.35668 * 114.61541 * 179.76492 * 15 14 13 17 17 C 1.37959 * 114.80136 * 0.46646 * 16 15 14 18 18 S 1.76200 * 125.11651 * 179.82346 * 17 16 15 19 19 C 1.76196 * 99.99995 * 174.45438 * 18 17 16 20 20 C 1.39115 * 120.07597 * 274.26366 * 19 18 17 21 21 C 1.38029 * 119.91755 * 179.74202 * 20 19 18 22 22 C 1.38458 * 120.08059 * 0.53463 * 21 20 19 23 23 Cl 1.73598 * 119.92371 * 179.70055 * 22 21 20 24 24 C 1.38467 * 120.15311 * 359.71861 * 22 21 20 25 25 C 1.38022 * 120.07886 * 0.02640 * 24 22 21 26 26 S 1.75813 * 109.76442 * 359.55409 * 17 16 15 27 27 H 0.96994 * 120.00270 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00121 * 0.02562 * 11 9 7 29 29 H 1.08000 * 119.99596 * 359.97438 * 13 12 11 30 30 H 1.07996 * 122.69157 * 0.03754 * 15 14 13 31 31 H 1.07998 * 122.60202 * 180.26088 * 16 15 14 32 32 H 1.07999 * 120.03934 * 359.97387 * 20 19 18 33 33 H 1.08001 * 119.95904 * 180.22566 * 21 20 19 34 34 H 1.08002 * 119.95774 * 180.02562 * 24 22 21 35 35 H 1.08000 * 120.03832 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5403 1.4403 0.7000 7 6 2.0076 -1.2100 -0.0005 8 1 3.0875 -1.2100 -0.0001 9 6 1.3124 -2.4142 -0.0005 10 8 0.0909 -2.4144 -0.0005 11 7 1.9864 -3.5814 -0.0016 12 7 1.2860 -4.7948 -0.0021 13 6 1.9420 -5.9309 -0.0026 14 6 1.2384 -7.1498 -0.0026 15 6 1.8198 -8.4075 -0.0036 16 6 0.9373 -9.4379 0.0016 17 6 -0.3903 -9.0629 -0.0031 18 16 -1.7575 -10.1744 -0.0025 19 6 -3.0848 -9.0267 0.1577 20 6 -3.4811 -8.5907 1.4179 21 6 -4.5178 -7.6875 1.5393 22 6 -5.1703 -7.2240 0.4095 23 17 -6.4787 -6.0940 0.5674 24 6 -4.7818 -7.6599 -0.8461 25 6 -3.7425 -8.5589 -0.9753 26 16 -0.5127 -7.3090 -0.0019 27 1 -0.4850 0.8400 0.0004 28 1 2.9564 -3.5813 -0.0020 29 1 3.0220 -5.9309 -0.0031 30 1 2.8895 -8.5556 -0.0039 31 1 1.2499 -10.4717 0.0057 32 1 -2.9759 -8.9556 2.2999 33 1 -4.8237 -7.3458 2.5171 34 1 -5.2926 -7.2959 -1.7253 35 1 -3.4403 -8.8988 -1.9549 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004739148.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:16 Heat of formation + Delta-G solvation = 59.015913 kcal Electronic energy + Delta-G solvation = -23269.162876 eV Core-core repulsion = 19512.045414 eV Total energy + Delta-G solvation = -3757.117462 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.000 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.39689 -37.91023 -37.28325 -36.70219 -35.24292 -32.72303 -31.58370 -31.47529 -31.04375 -28.68680 -26.68656 -24.71397 -23.17921 -23.12146 -21.63191 -20.17629 -19.58581 -18.13074 -17.95272 -16.85550 -16.60121 -15.98398 -15.78676 -15.59837 -15.24672 -14.63370 -14.14609 -13.90064 -13.86728 -13.63339 -13.56093 -12.95352 -12.85192 -12.75472 -12.54887 -12.10511 -11.96836 -11.68113 -11.48765 -11.45998 -11.10866 -11.02990 -10.98003 -10.71505 -10.47411 -10.41417 -9.66201 -9.60318 -9.40114 -9.04335 -9.01018 -8.46454 -7.88499 -7.83450 -6.87798 -6.46059 -5.05351 0.40511 0.53173 0.97221 1.34121 1.56440 1.84945 2.21633 2.35963 2.44659 3.00101 3.06749 3.11023 3.26236 3.31195 3.65898 4.03893 4.36314 4.41717 4.54395 4.92467 4.99007 5.20280 5.21035 5.42733 5.43913 5.58355 5.66077 5.70972 5.86104 5.88641 5.89644 5.94426 6.24435 6.33037 6.52620 6.63415 7.13422 7.79104 7.88994 8.51504 8.68709 9.21254 10.31223 10.57362 Molecular weight = 366.00amu Principal moments of inertia in cm(-1) A = 0.008527 B = 0.002753 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.828255 B =10170.072771 C =13146.485423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.086 3.914 3 Si 0.919 3.081 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.531 4.531 8 H 0.071 0.929 9 C 0.554 3.446 10 O -0.553 6.553 11 N -0.580 5.580 12 N -0.185 5.185 13 C 0.032 3.968 14 C -0.121 4.121 15 C -0.127 4.127 16 C -0.101 4.101 17 C -0.270 4.270 18 S 0.058 5.942 19 C -0.158 4.158 20 C -0.047 4.047 21 C -0.119 4.119 22 C -0.001 4.001 23 Cl -0.060 7.060 24 C -0.119 4.119 25 C -0.047 4.047 26 S 0.230 5.770 27 H 0.275 0.725 28 H 0.371 0.629 29 H 0.118 0.882 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 -19.360 0.530 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.138 4.138 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.089 0.911 9 C 0.364 3.636 10 O -0.433 6.433 11 N -0.326 5.326 12 N 0.002 4.998 13 C -0.175 4.175 14 C -0.245 4.245 15 C -0.163 4.163 16 C -0.138 4.138 17 C -0.501 4.501 18 S 0.301 5.699 19 C -0.270 4.270 20 C -0.068 4.068 21 C -0.139 4.139 22 C -0.028 4.028 23 Cl -0.031 7.031 24 C -0.140 4.140 25 C -0.068 4.068 26 S 0.493 5.507 27 H 0.086 0.914 28 H 0.207 0.793 29 H 0.135 0.865 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.142 -18.712 0.461 20.412 hybrid contribution 3.082 1.195 0.107 3.307 sum -5.061 -17.517 0.568 18.242 Atomic orbital electron populations 1.70152 1.07265 1.28118 1.31127 1.25732 0.94742 1.00814 0.92477 0.86181 0.80083 0.80316 0.79175 1.19351 1.20050 1.18599 1.19342 0.94753 0.89986 1.52653 0.91064 1.16404 0.88013 0.80298 0.78921 1.90791 1.13217 1.85152 1.54161 1.48169 1.07563 1.01722 1.75134 1.75110 1.27746 0.92925 1.04052 1.21882 0.97084 0.89695 1.08808 1.22162 0.96618 0.95477 1.10277 1.20381 1.00547 0.89502 1.05848 1.19849 0.89335 1.00125 1.04478 1.27502 1.01475 1.01988 1.19113 1.83849 0.89842 1.04448 1.91785 1.22121 1.03127 1.05633 0.96163 1.21585 0.94445 0.93955 0.96844 1.21139 0.96410 0.98021 0.98337 1.21228 0.92248 0.94066 0.95235 1.98403 1.46769 1.59696 1.98196 1.21141 0.98157 0.98254 0.96399 1.21567 0.93141 0.93653 0.98438 1.84930 1.02928 0.94969 1.67848 0.91413 0.79340 0.86452 0.83946 0.84362 0.83979 0.84069 0.84056 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.49 11.67 55.53 0.65 -20.84 16 2 C 0.09 2.32 5.49 -17.40 -0.10 2.22 16 3 Si 0.92 19.12 29.56 -169.99 -5.02 14.10 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.53 -14.53 9.16 -38.73 -0.35 -14.88 16 8 H 0.07 1.73 7.84 -52.49 -0.41 1.32 16 9 C 0.55 16.03 7.60 -15.96 -0.12 15.91 16 10 O -0.55 -18.47 15.14 4.78 0.07 -18.39 16 11 N -0.58 -13.82 6.26 28.60 0.18 -13.64 16 12 N -0.18 -4.19 10.72 30.87 0.33 -3.86 16 13 C 0.03 0.56 10.67 -16.88 -0.18 0.38 16 14 C -0.12 -1.93 6.27 -38.52 -0.24 -2.17 16 15 C -0.13 -1.61 10.14 -40.38 -0.41 -2.02 16 16 C -0.10 -1.21 10.18 -40.60 -0.41 -1.62 16 17 C -0.27 -3.51 6.74 30.63 0.21 -3.31 16 18 S 0.06 0.63 22.22 -107.50 -2.39 -1.76 16 19 C -0.16 -1.76 4.35 -38.93 -0.17 -1.93 16 20 C -0.05 -0.50 9.80 -39.33 -0.39 -0.89 16 21 C -0.12 -1.26 9.82 -39.58 -0.39 -1.65 16 22 C 0.00 -0.01 6.32 -39.42 -0.25 -0.26 16 23 Cl -0.06 -0.67 28.95 -51.86 -1.50 -2.17 16 24 C -0.12 -1.26 9.82 -39.58 -0.39 -1.64 16 25 C -0.05 -0.50 9.80 -39.34 -0.39 -0.88 16 26 S 0.23 3.69 21.59 -107.50 -2.32 1.37 16 27 H 0.27 7.14 8.30 -40.82 -0.34 6.81 16 28 H 0.37 7.34 8.61 -182.59 -1.57 5.77 16 29 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 30 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -34.98 364.71 -12.16 -47.14 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -4.08 Total: 5.30 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -3.58 Total: -12.73 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 1.16 Total: -38.34 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.07 Total: -18.39 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -4.71 Total: -0.40 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.98 -12.16 -47.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004739148.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.160 kcal (2) G-P(sol) polarization free energy of solvation -34.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds