Wall clock time and date at job start Tue Mar 31 2020 07:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31531 * 1 3 3 Si 1.86796 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47139 * 240.00356 * 3 2 1 5 5 H 1.48500 * 109.47360 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47002 * 120.00511 * 3 2 1 7 7 C 1.38793 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99825 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00406 * 359.97438 * 7 2 1 10 10 C 1.76197 * 100.00284 * 180.02562 * 9 7 2 11 11 N 1.30971 * 118.47137 * 0.27304 * 10 9 7 12 12 C 1.34757 * 121.63102 * 180.30447 * 11 10 9 13 13 C 1.39817 * 121.56859 * 179.69305 * 12 11 10 14 14 C 1.37760 * 119.54411 * 180.02562 * 13 12 11 15 15 Cl 1.73600 * 119.60595 * 180.02562 * 14 13 12 16 16 C 1.39060 * 120.79413 * 0.04172 * 14 13 12 17 17 C 1.36723 * 120.72349 * 359.95340 * 16 14 13 18 18 C 1.39377 * 119.68355 * 0.02689 * 17 16 14 19 19 C 1.46946 * 121.81383 * 179.97438 * 18 17 16 20 20 O 1.21729 * 121.24935 * 0.03849 * 19 18 17 21 21 N 1.35336 * 117.50019 * 180.02562 * 19 18 17 22 22 C 1.46499 * 119.77412 * 179.97438 * 21 19 18 23 23 C 1.53000 * 109.46840 * 90.00213 * 22 21 19 24 24 H 1.08996 * 109.82328 * 305.69411 * 23 22 21 25 25 C 1.54381 * 109.82728 * 184.81317 * 23 22 21 26 26 C 1.55453 * 102.18357 * 219.17807 * 25 23 22 27 27 C 1.54944 * 100.98730 * 34.04085 * 26 25 23 28 28 O 1.43235 * 109.83322 * 66.58411 * 23 22 21 29 29 H 0.97005 * 119.99791 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.22485 * 359.97438 * 13 12 11 31 31 H 1.08000 * 119.64281 * 179.97438 * 16 14 13 32 32 H 1.07998 * 120.15598 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.47391 * 329.99883 * 22 21 19 34 34 H 1.09001 * 109.46813 * 209.99939 * 22 21 19 35 35 H 1.08996 * 110.84869 * 337.31952 * 25 23 22 36 36 H 1.09002 * 110.85008 * 100.93607 * 25 23 22 37 37 H 1.08993 * 111.06123 * 276.12096 * 26 25 23 38 38 H 1.09005 * 111.18140 * 152.00714 * 26 25 23 39 39 H 1.09004 * 110.30617 * 204.68397 * 27 26 25 40 40 H 1.09000 * 110.39425 * 82.56455 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0092 -1.2020 -0.0005 8 1 3.0893 -1.2020 -0.0010 9 16 1.1282 -2.7279 -0.0005 10 6 2.4779 -3.8606 -0.0005 11 7 3.6963 -3.3800 0.0049 12 6 4.7747 -4.1880 -0.0008 13 6 6.0748 -3.6735 -0.0013 14 6 7.1474 -4.5379 -0.0078 15 17 8.7623 -3.9009 -0.0078 16 6 6.9522 -5.9147 -0.0147 17 6 5.6904 -6.4413 -0.0143 18 6 4.5871 -5.5897 -0.0074 19 6 3.2109 -6.1048 -0.0072 20 8 2.9843 -7.3008 -0.0123 21 7 2.2048 -5.1996 -0.0007 22 6 0.8135 -5.6584 -0.0007 23 6 0.3317 -5.8255 1.4418 24 1 1.0120 -6.4812 1.9851 25 6 -1.0917 -6.4232 1.4524 26 6 -1.7687 -5.6378 2.6107 27 6 -1.0812 -4.2562 2.4719 28 8 0.2712 -4.5473 2.0852 29 1 -0.4850 0.8401 0.0004 30 1 6.2370 -2.6058 0.0025 31 1 7.8065 -6.5754 -0.0202 32 1 5.5494 -7.5120 -0.0193 33 1 0.7462 -6.6147 -0.5195 34 1 0.1889 -4.9242 -0.5097 35 1 -1.5993 -6.2334 0.5067 36 1 -1.0626 -7.4907 1.6708 37 1 -1.5451 -6.0928 3.5755 38 1 -2.8448 -5.5584 2.4565 39 1 -1.0968 -3.7284 3.4256 40 1 -1.5750 -3.6617 1.7032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005571418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:22 Heat of formation + Delta-G solvation = -41.584865 kcal Electronic energy + Delta-G solvation = -28418.113693 eV Core-core repulsion = 24349.714077 eV Total energy + Delta-G solvation = -4068.399616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.059 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -41.05010 -39.29590 -38.15699 -36.92123 -36.22866 -33.98459 -32.87760 -32.03822 -31.07747 -29.93692 -29.53368 -26.07963 -25.82839 -24.50606 -23.37598 -21.69137 -21.59246 -21.05503 -19.13965 -18.48668 -17.65279 -16.83805 -16.59142 -16.20581 -15.54692 -15.28382 -15.14575 -15.05229 -14.81004 -14.28405 -14.07352 -13.64528 -13.47635 -13.34579 -13.15302 -13.06720 -12.53922 -12.23091 -12.01195 -11.86233 -11.70870 -11.53504 -11.41588 -11.27391 -11.25621 -11.08749 -11.01261 -10.86347 -10.81810 -10.42628 -9.78418 -9.76997 -9.51923 -9.24544 -9.06489 -8.96688 -8.64663 -8.01724 -6.91347 -6.68628 -4.38995 0.87008 1.10347 2.19161 2.34472 2.66990 2.98157 3.03458 3.13111 3.13744 3.17947 3.84464 4.02704 4.33833 4.50400 4.61593 4.69377 4.76937 4.81351 4.93130 5.02511 5.08538 5.19637 5.26559 5.30036 5.39731 5.54158 5.56773 5.67368 5.69057 5.70614 5.79300 5.99360 6.03138 6.12800 6.20170 6.26323 6.39430 6.45619 6.63576 6.91638 7.08610 7.28015 7.39917 8.10427 8.26954 8.56283 8.85664 10.37613 Molecular weight = 366.06amu Principal moments of inertia in cm(-1) A = 0.007224 B = 0.004728 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3874.815305 B = 5920.956686 C = 9319.779914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.080 3.920 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.117 0.883 9 S 0.226 5.774 10 C 0.332 3.668 11 N -0.548 5.548 12 C 0.223 3.777 13 C -0.131 4.131 14 C 0.022 3.978 15 Cl -0.077 7.077 16 C -0.178 4.178 17 C -0.012 4.012 18 C -0.242 4.242 19 C 0.559 3.441 20 O -0.536 6.536 21 N -0.528 5.528 22 C 0.083 3.917 23 C 0.066 3.934 24 H 0.081 0.919 25 C -0.145 4.145 26 C -0.155 4.155 27 C 0.051 3.949 28 O -0.354 6.354 29 H 0.278 0.722 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 -9.524 1.712 9.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.131 4.131 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.694 4.694 8 H 0.135 0.865 9 S 0.474 5.526 10 C -0.030 4.030 11 N -0.277 5.277 12 C 0.100 3.900 13 C -0.153 4.153 14 C -0.007 4.007 15 Cl -0.048 7.048 16 C -0.199 4.199 17 C -0.031 4.031 18 C -0.252 4.252 19 C 0.352 3.648 20 O -0.414 6.414 21 N -0.252 5.252 22 C -0.041 4.041 23 C 0.007 3.993 24 H 0.099 0.901 25 C -0.183 4.183 26 C -0.193 4.193 27 C -0.026 4.026 28 O -0.272 6.272 29 H 0.088 0.912 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.850 -9.167 1.738 9.368 hybrid contribution 1.734 0.288 -0.002 1.758 sum 0.884 -8.879 1.735 9.090 Atomic orbital electron populations 1.69884 1.06258 1.29094 1.44965 1.25171 0.95146 0.99971 0.92819 0.85969 0.79231 0.79336 0.79755 1.19225 1.20705 1.19208 1.23763 0.98443 0.89761 1.57419 0.86513 1.83546 0.98662 0.95294 1.75129 1.26283 0.99917 0.85185 0.91663 1.69083 0.95023 1.32688 1.30882 1.18653 0.92999 0.88226 0.90139 1.20564 0.88820 1.00249 1.05690 1.20869 0.85180 0.93471 1.01149 1.98352 1.22465 1.87221 1.96759 1.20431 0.97527 0.92700 1.09248 1.20494 0.90335 0.99570 0.92733 1.20481 0.93191 0.94713 1.16830 1.18297 0.85081 0.85518 0.75906 1.90765 1.85000 1.14276 1.51384 1.46284 1.08331 1.06093 1.64514 1.22406 0.80671 1.02659 0.98317 1.23073 0.97117 0.86625 0.92472 0.90086 1.23104 0.94520 1.00740 0.99958 1.23301 1.00767 0.96409 0.98807 1.23372 0.82842 0.95684 1.00679 1.88717 1.26827 1.34253 1.77443 0.91210 0.83972 0.85133 0.84732 0.87730 0.87994 0.89982 0.89935 0.90699 0.89962 0.89918 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.01 13.22 55.49 0.73 -21.28 16 2 C 0.08 1.98 5.49 -17.48 -0.10 1.89 16 3 Si 0.93 19.75 29.55 -169.99 -5.02 14.73 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.55 -13.87 9.23 30.94 0.29 -13.59 16 8 H 0.12 3.05 6.48 -52.48 -0.34 2.71 16 9 S 0.23 5.05 17.57 -107.50 -1.89 3.16 16 10 C 0.33 7.15 7.51 -88.48 -0.66 6.48 16 11 N -0.55 -12.29 8.28 -10.89 -0.09 -12.38 16 12 C 0.22 4.51 6.62 -84.78 -0.56 3.95 16 13 C -0.13 -2.33 9.80 -39.17 -0.38 -2.71 16 14 C 0.02 0.34 6.31 -39.45 -0.25 0.09 16 15 Cl -0.08 -1.03 28.93 -51.86 -1.50 -2.53 16 16 C -0.18 -2.56 9.74 -39.82 -0.39 -2.95 16 17 C -0.01 -0.19 9.62 -39.71 -0.38 -0.57 16 18 C -0.24 -4.61 5.90 -104.74 -0.62 -5.23 16 19 C 0.56 10.97 7.66 -12.48 -0.10 10.87 16 20 O -0.54 -10.69 16.30 5.16 0.08 -10.61 16 21 N -0.53 -10.12 2.62 -117.39 -0.31 -10.43 16 22 C 0.08 1.29 4.61 -4.04 -0.02 1.28 16 23 C 0.07 0.96 3.76 -26.01 -0.10 0.87 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 C -0.15 -1.53 6.56 -24.70 -0.16 -1.69 16 26 C -0.16 -1.58 7.16 -24.40 -0.17 -1.75 16 27 C 0.05 0.69 7.78 38.18 0.30 0.99 16 28 O -0.35 -5.97 8.74 -35.23 -0.31 -6.28 16 29 H 0.28 6.61 8.31 -40.82 -0.34 6.28 16 30 H 0.14 2.48 8.06 -52.49 -0.42 2.05 16 31 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.13 1.94 7.81 -52.49 -0.41 1.53 16 33 H 0.10 1.47 7.46 -51.93 -0.39 1.08 16 34 H 0.10 1.56 6.47 -51.93 -0.34 1.22 16 35 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -28.33 363.62 -10.53 -38.86 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.40 Total: 3.36 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.31 Total: -2.09 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.34 Total: -44.09 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.22 Total: -16.88 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -1.89 Total: 3.16 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.50 Total: -2.53 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.33 -10.53 -38.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005571418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.727 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.99 seconds