Wall clock time and date at job start Tue Mar 31 2020 07:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 120.00176 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99567 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99748 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99741 * 3 2 1 7 7 C 1.38797 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00122 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00452 * 180.02562 * 7 2 1 10 10 C 1.76196 * 100.00443 * 179.97438 * 9 7 2 11 11 N 1.30968 * 118.46992 * 0.02562 * 10 9 7 12 12 C 1.34760 * 121.63298 * 179.97438 * 11 10 9 13 13 C 1.39806 * 121.56506 * 179.97438 * 12 11 10 14 14 C 1.37766 * 119.54138 * 180.02562 * 13 12 11 15 15 Cl 1.73604 * 119.60605 * 179.97438 * 14 13 12 16 16 C 1.39060 * 120.79211 * 0.02562 * 14 13 12 17 17 C 1.36715 * 120.72539 * 359.97438 * 16 14 13 18 18 C 1.39381 * 119.68526 * 359.97438 * 17 16 14 19 19 C 1.46945 * 121.81708 * 179.97438 * 18 17 16 20 20 O 1.21727 * 121.25191 * 0.04635 * 19 18 17 21 21 N 1.35339 * 117.49880 * 179.76170 * 19 18 17 22 22 C 1.46497 * 119.77539 * 180.24767 * 21 19 18 23 23 C 1.52996 * 109.46905 * 270.27799 * 22 21 19 24 24 H 1.09001 * 110.27890 * 60.64237 * 23 22 21 25 25 C 1.54949 * 110.30785 * 182.83313 * 23 22 21 26 26 C 1.55307 * 100.93884 * 155.36130 * 25 23 22 27 27 C 1.54381 * 102.25755 * 325.86498 * 26 25 23 28 28 O 1.43245 * 107.58457 * 21.35898 * 27 26 25 29 29 H 0.96997 * 120.00211 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.23233 * 0.02562 * 13 12 11 31 31 H 1.08004 * 119.63537 * 180.02562 * 16 14 13 32 32 H 1.08003 * 120.15718 * 180.02562 * 17 16 14 33 33 H 1.08993 * 109.47081 * 30.27972 * 22 21 19 34 34 H 1.08998 * 109.46715 * 150.27938 * 22 21 19 35 35 H 1.08998 * 111.12849 * 273.27931 * 25 23 22 36 36 H 1.08994 * 111.12518 * 37.44579 * 25 23 22 37 37 H 1.09003 * 110.84561 * 207.67784 * 26 25 23 38 38 H 1.09000 * 111.02379 * 84.14364 * 26 25 23 39 39 H 1.08998 * 109.83351 * 261.84686 * 27 26 25 40 40 H 1.08996 * 109.90663 * 140.90873 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 1.4001 5 1 1.4468 2.6527 -0.7001 6 1 3.5469 1.4401 -0.7000 7 6 2.0092 -1.2020 -0.0005 8 1 1.4693 -2.1374 -0.0005 9 16 3.7712 -1.2021 0.0001 10 6 4.0773 -2.9373 -0.0001 11 7 3.0519 -3.7521 -0.0012 12 6 3.2123 -5.0901 -0.0020 13 6 2.1167 -5.9585 -0.0026 14 6 2.3290 -7.3198 -0.0029 15 17 0.9697 -8.3997 -0.0030 16 6 3.6190 -7.8391 -0.0020 17 6 4.7058 -7.0098 -0.0014 18 6 4.5201 -5.6284 -0.0022 19 6 5.6543 -4.6942 -0.0010 20 8 6.8034 -5.0959 -0.0001 21 7 5.3735 -3.3703 -0.0069 22 6 6.4664 -2.3947 -0.0115 23 6 6.8518 -2.0539 1.4294 24 1 7.1883 -2.9491 1.9523 25 6 7.9586 -0.9697 1.4479 26 6 7.7301 -0.3392 2.8487 27 6 6.1980 -0.4410 3.0080 28 8 5.7373 -1.4640 2.1174 29 1 -0.4850 0.8400 -0.0004 30 1 1.1110 -5.5651 -0.0029 31 1 3.7638 -8.9094 -0.0026 32 1 5.7037 -7.4231 -0.0011 33 1 7.3282 -2.8172 -0.5279 34 1 6.1430 -1.4893 -0.5250 35 1 8.9493 -1.4184 1.3759 36 1 7.8032 -0.2361 0.6569 37 1 8.0532 0.7017 2.8629 38 1 8.2397 -0.9123 3.6233 39 1 5.7351 0.5111 2.7486 40 1 5.9484 -0.7056 4.0355 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005571420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:28 Heat of formation + Delta-G solvation = -36.655849 kcal Electronic energy + Delta-G solvation = -28464.465960 eV Core-core repulsion = 24396.280082 eV Total energy + Delta-G solvation = -4068.185877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.059 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.14239 -39.37710 -38.23552 -37.01155 -36.26011 -34.10679 -32.80405 -32.15906 -31.16149 -30.07034 -29.61429 -26.15357 -25.94019 -24.63814 -23.45434 -21.74869 -21.65129 -21.26859 -19.22920 -18.55559 -17.68490 -16.84919 -16.69420 -16.31728 -15.63450 -15.29447 -15.25827 -15.13503 -14.89716 -14.51011 -14.28697 -13.69459 -13.56600 -13.35430 -13.14021 -13.01770 -12.63235 -12.32599 -12.22958 -11.94741 -11.88389 -11.77221 -11.63926 -11.38127 -11.37271 -11.19454 -11.08393 -10.92615 -10.85731 -10.34954 -9.89795 -9.75699 -9.52810 -9.33205 -9.14396 -9.04198 -8.67970 -8.21571 -7.10804 -6.59322 -4.35966 0.79403 1.05172 2.02824 2.21521 2.60084 2.82268 2.93386 3.01208 3.05019 3.14528 3.83496 3.92718 4.17831 4.27113 4.39614 4.51303 4.68294 4.82032 4.82547 4.90029 5.00451 5.07800 5.14200 5.21256 5.30004 5.42463 5.49828 5.55774 5.58132 5.61858 5.68693 5.85234 5.88465 6.05057 6.07710 6.18694 6.33674 6.41744 6.57377 6.84178 6.99467 7.14121 7.65844 8.01204 8.46099 8.60760 8.78174 10.48310 Molecular weight = 366.06amu Principal moments of inertia in cm(-1) A = 0.008459 B = 0.004377 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.169355 B = 6395.667819 C = 9103.946488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.102 3.898 3 Si 0.840 3.160 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.240 1.240 7 C -0.534 4.534 8 H 0.133 0.867 9 S 0.131 5.869 10 C 0.360 3.640 11 N -0.532 5.532 12 C 0.219 3.781 13 C -0.123 4.123 14 C 0.020 3.980 15 Cl -0.074 7.074 16 C -0.171 4.171 17 C -0.015 4.015 18 C -0.237 4.237 19 C 0.560 3.440 20 O -0.534 6.534 21 N -0.529 5.529 22 C 0.094 3.906 23 C 0.064 3.936 24 H 0.075 0.925 25 C -0.146 4.146 26 C -0.153 4.153 27 C 0.049 3.951 28 O -0.354 6.354 29 H 0.277 0.723 30 H 0.146 0.854 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.625 -3.801 2.016 13.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.110 4.110 3 Si 0.664 3.336 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.164 1.164 7 C -0.681 4.681 8 H 0.151 0.849 9 S 0.376 5.624 10 C -0.004 4.004 11 N -0.260 5.260 12 C 0.097 3.903 13 C -0.145 4.145 14 C -0.009 4.009 15 Cl -0.045 7.045 16 C -0.193 4.193 17 C -0.034 4.034 18 C -0.247 4.247 19 C 0.353 3.647 20 O -0.411 6.411 21 N -0.253 5.253 22 C -0.029 4.029 23 C 0.005 3.995 24 H 0.093 0.907 25 C -0.184 4.184 26 C -0.191 4.191 27 C -0.028 4.028 28 O -0.273 6.273 29 H 0.088 0.912 30 H 0.164 0.836 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.703 -2.694 1.973 13.135 hybrid contribution 0.062 -0.582 0.172 0.610 sum 12.765 -3.276 2.145 13.352 Atomic orbital electron populations 1.69854 1.05844 1.28249 1.44112 1.24774 0.94619 0.98461 0.93164 0.87067 0.81692 0.84450 0.80376 1.18461 1.18802 1.16416 1.23108 0.87599 0.99898 1.57536 0.84907 1.83011 1.11546 0.89386 1.78410 1.25407 0.80072 1.03084 0.91836 1.69074 1.26251 1.01299 1.29379 1.18636 0.90631 0.90451 0.90587 1.20638 0.99514 0.89764 1.04631 1.20887 0.88326 0.90513 1.01141 1.98358 1.44882 1.64496 1.96722 1.20476 0.90033 1.00282 1.08465 1.20498 0.98963 0.90949 0.93027 1.20506 0.92965 0.94916 1.16302 1.18283 0.89205 0.81284 0.75900 1.90773 1.21544 1.77551 1.51277 1.46314 1.06928 1.07486 1.64591 1.22144 0.90653 0.92912 0.97178 1.23343 0.87080 0.96602 0.92460 0.90714 1.23231 0.99148 0.98012 0.98053 1.23100 0.96796 1.02067 0.97111 1.23118 0.93016 0.92438 0.94278 1.88756 1.29239 1.52136 1.57167 0.91214 0.83618 0.84987 0.84613 0.87236 0.87886 0.89724 0.89720 0.90019 0.90725 0.91021 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.25 13.96 55.49 0.77 -22.47 16 2 C 0.10 2.64 5.50 -17.48 -0.10 2.55 16 3 Si 0.84 17.97 27.74 -169.99 -4.71 13.26 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.24 -4.75 6.74 56.52 0.38 -4.37 16 7 C -0.53 -13.92 9.77 30.94 0.30 -13.62 16 8 H 0.13 3.86 6.71 -52.48 -0.35 3.51 16 9 S 0.13 2.80 15.60 -107.50 -1.68 1.12 16 10 C 0.36 7.60 7.41 -88.49 -0.66 6.94 16 11 N -0.53 -11.99 8.28 -10.89 -0.09 -12.08 16 12 C 0.22 4.41 6.61 -84.78 -0.56 3.85 16 13 C -0.12 -2.22 9.80 -39.17 -0.38 -2.61 16 14 C 0.02 0.30 6.31 -39.45 -0.25 0.06 16 15 Cl -0.07 -1.00 28.93 -51.86 -1.50 -2.50 16 16 C -0.17 -2.43 9.74 -39.83 -0.39 -2.82 16 17 C -0.01 -0.23 9.62 -39.71 -0.38 -0.61 16 18 C -0.24 -4.43 5.90 -104.74 -0.62 -5.04 16 19 C 0.56 10.64 7.66 -12.48 -0.10 10.54 16 20 O -0.53 -10.26 16.31 5.16 0.08 -10.18 16 21 N -0.53 -9.77 2.59 -117.40 -0.30 -10.08 16 22 C 0.09 1.38 4.79 -4.05 -0.02 1.37 16 23 C 0.06 0.87 3.71 -25.70 -0.10 0.78 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 C -0.15 -1.42 6.57 -24.48 -0.16 -1.58 16 26 C -0.15 -1.41 7.02 -24.78 -0.17 -1.59 16 27 C 0.05 0.60 7.79 37.88 0.30 0.90 16 28 O -0.35 -5.67 8.65 -35.23 -0.30 -5.97 16 29 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.15 2.64 8.06 -52.49 -0.42 2.22 16 31 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 32 H 0.14 1.89 7.81 -52.48 -0.41 1.48 16 33 H 0.11 1.42 7.47 -51.93 -0.39 1.03 16 34 H 0.10 1.45 6.49 -51.93 -0.34 1.11 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -29.37 361.02 -10.01 -39.39 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -4.44 Total: 4.97 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -3.28 Total: -0.89 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.38 Total: -44.63 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.22 Total: -16.15 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -4.71 Total: 13.26 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.68 Total: 1.12 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.37 -10.01 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005571420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.731 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds